Wall clock time and date at job start Mon Mar 30 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.56408 * 2 1 4 4 C 1.53177 * 109.56813 * 120.23355 * 2 1 3 5 5 C 1.50696 * 109.08937 * 62.87997 * 4 2 1 6 6 O 1.21475 * 119.74619 * 208.57970 * 5 4 2 7 7 C 1.40572 * 120.51265 * 28.84560 * 5 4 2 8 8 C 1.35358 * 121.55157 * 0.20891 * 7 5 4 9 9 C 1.46453 * 119.44021 * 180.23309 * 8 7 5 10 10 C 1.40546 * 119.93583 * 244.72277 * 9 8 7 11 11 C 1.36026 * 120.07370 * 179.75645 * 10 9 8 12 12 C 1.41112 * 119.92409 * 0.54025 * 11 10 9 13 13 C 1.40718 * 120.06516 * 179.68939 * 12 11 10 14 14 H 1.08005 * 120.00506 * 204.80100 * 13 12 11 15 15 C 1.40381 * 119.99821 * 24.80506 * 13 12 11 16 16 N 1.30570 * 120.00077 * 17.88696 * 15 13 12 17 17 Si 1.86800 * 119.99764 * 197.88650 * 15 13 12 18 18 H 1.48503 * 109.47082 * 60.00005 * 17 15 13 19 19 H 1.48507 * 109.47118 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47326 * 300.00032 * 17 15 13 21 21 C 1.41113 * 119.87007 * 359.71985 * 12 11 10 22 22 C 1.36026 * 119.92674 * 359.97438 * 21 12 11 23 23 C 1.50548 * 121.12310 * 0.23332 * 8 7 5 24 24 H 1.09007 * 109.47031 * 299.76259 * 1 2 3 25 25 H 1.09002 * 109.47120 * 59.76219 * 1 2 3 26 26 H 1.09002 * 109.46899 * 179.76434 * 1 2 3 27 27 H 1.08996 * 109.47053 * 180.23878 * 3 2 1 28 28 H 1.09001 * 109.46830 * 300.23580 * 3 2 1 29 29 H 1.09000 * 109.46774 * 60.23538 * 3 2 1 30 30 H 1.09004 * 109.53901 * 302.99151 * 4 2 1 31 31 H 1.09004 * 109.53536 * 182.75664 * 4 2 1 32 32 H 1.07998 * 119.22328 * 180.20097 * 7 5 4 33 33 H 1.08009 * 119.96319 * 0.02562 * 10 9 8 34 34 H 1.07996 * 120.03560 * 180.25433 * 11 10 9 35 35 H 0.96996 * 119.99753 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.03808 * 179.97438 * 21 12 11 37 37 H 1.08005 * 119.96533 * 180.02562 * 22 21 12 38 38 H 1.08992 * 109.46817 * 210.22212 * 23 8 7 39 39 H 1.08997 * 109.46461 * 90.23003 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0424 1.4417 0.0000 4 6 2.0430 -0.7267 1.2470 5 6 1.5964 -2.1652 1.1978 6 8 1.4179 -2.7765 2.2322 7 6 1.3901 -2.8067 -0.0359 8 6 1.5872 -2.1634 -1.2104 9 6 1.3534 -2.8749 -2.4689 10 6 2.4249 -3.1228 -3.3440 11 6 2.2118 -3.7877 -4.5114 12 6 0.9112 -4.2189 -4.8486 13 6 0.6863 -4.9013 -6.0585 14 1 -0.2923 -4.8827 -6.5152 15 6 1.7338 -5.6064 -6.6719 16 7 2.7949 -5.9291 -5.9829 17 14 1.6095 -6.0830 -8.4737 18 1 1.4687 -4.8580 -9.3012 19 1 2.8370 -6.8146 -8.8781 20 1 0.4243 -6.9549 -8.6746 21 6 -0.1636 -3.9638 -3.9705 22 6 0.0571 -3.3038 -2.8017 23 6 2.0428 -0.7289 -1.2450 24 1 -0.3633 0.5102 0.8922 25 1 -0.3633 0.5175 -0.8879 26 1 -0.3633 -1.0277 -0.0042 27 1 3.1323 1.4400 -0.0043 28 1 1.6764 1.9573 -0.8879 29 1 1.6833 1.9549 0.8921 30 1 1.6381 -0.2496 2.1395 31 1 3.1320 -0.6839 1.2717 32 1 1.0669 -3.8371 -0.0468 33 1 3.4194 -2.7886 -3.0873 34 1 3.0363 -3.9814 -5.1814 35 1 3.5185 -6.4166 -6.4066 36 1 -1.1602 -4.2922 -4.2260 37 1 -0.7650 -3.1086 -2.1289 38 1 1.6485 -0.2441 -2.1381 39 1 3.1320 -0.6941 -1.2636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242316916.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:53 Heat of formation + Delta-G solvation = -40.697604 kcal Electronic energy + Delta-G solvation = -20009.165165 eV Core-core repulsion = 17072.975483 eV Total energy + Delta-G solvation = -2936.189681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.42329 -39.51878 -38.32896 -35.97261 -34.23571 -31.65205 -31.18809 -29.90947 -28.28809 -27.67641 -27.14116 -23.77073 -22.82286 -21.63776 -20.84704 -19.32778 -18.10924 -17.52519 -17.09640 -16.61018 -16.03156 -15.86481 -15.52968 -15.31594 -15.17366 -14.70365 -14.37274 -14.07935 -13.95579 -13.54676 -13.28059 -13.11224 -13.03008 -12.85143 -12.65276 -12.61480 -12.55438 -12.25561 -11.97905 -11.73812 -11.68204 -11.43075 -11.32978 -11.05951 -10.47252 -10.07729 -9.52911 -9.19800 -8.73804 -6.39580 -0.13127 0.87260 1.16714 1.37805 1.48332 1.51874 2.06479 2.16826 2.63483 3.38742 3.57553 3.63288 3.84594 3.89790 4.10942 4.30925 4.37665 4.42367 4.43288 4.59848 4.68317 4.76654 4.90012 4.92736 4.96317 5.00572 5.06490 5.13058 5.20066 5.21643 5.27158 5.32459 5.35412 5.39773 5.51575 5.60967 5.67664 5.96786 6.03813 6.09721 6.28843 6.60313 6.69369 6.83341 6.95823 8.21088 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033699 B = 0.004064 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.681933 B = 6887.756234 C = 7068.599351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.050 4.050 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.398 3.602 6 O -0.533 6.533 7 C -0.304 4.304 8 C 0.105 3.895 9 C -0.232 4.232 10 C -0.071 4.071 11 C -0.195 4.195 12 C 0.091 3.909 13 C -0.490 4.490 14 H 0.080 0.920 15 C 0.038 3.962 16 N -0.810 5.810 17 Si 0.984 3.016 18 H -0.257 1.257 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.249 4.249 22 C -0.061 4.061 23 C -0.093 4.093 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.293 0.707 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 12.466 4.938 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.050 4.050 3 C -0.192 4.192 4 C -0.188 4.188 5 C 0.285 3.715 6 O -0.417 6.417 7 C -0.324 4.324 8 C 0.104 3.896 9 C -0.233 4.233 10 C -0.089 4.089 11 C -0.214 4.214 12 C 0.088 3.912 13 C -0.517 4.517 14 H 0.098 0.902 15 C -0.179 4.179 16 N -0.434 5.434 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.269 4.269 22 C -0.079 4.079 23 C -0.130 4.130 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.131 0.869 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.466 12.031 5.447 13.288 hybrid contribution -0.240 -1.119 -0.885 1.447 sum 1.226 10.911 4.563 11.890 Atomic orbital electron populations 1.22026 0.94594 1.01369 1.02993 1.20572 0.95817 0.96710 0.91869 1.21813 1.01869 0.92373 1.03101 1.22236 1.04082 0.91912 1.00590 1.21273 0.71624 0.90984 0.87654 1.90529 1.44140 1.68917 1.38102 1.22051 1.14948 1.01349 0.94010 1.21367 0.82837 0.94353 0.91032 1.18463 0.93989 1.13150 0.97667 1.20670 0.97055 0.97751 0.93454 1.20947 0.97653 1.04062 0.98763 1.18053 0.92171 0.88853 0.92082 1.19938 0.98022 1.27708 1.06071 0.90183 1.26887 0.93467 0.93210 1.04367 1.69744 1.07141 1.27170 1.39322 0.85222 0.79137 0.79330 0.75923 1.18140 1.18990 1.18377 1.20821 0.98513 1.10311 0.97217 1.20590 0.95334 0.96149 0.95803 1.21128 1.02571 0.89607 0.99664 0.91156 0.91362 0.94640 0.91108 0.91498 0.91107 0.87833 0.86353 0.88588 0.86897 0.87712 0.89554 0.88411 0.87426 0.89029 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.08 71.98 0.58 -2.67 16 2 C -0.05 -0.96 0.78 -52.08 -0.04 -1.00 16 3 C -0.13 -1.77 8.50 71.98 0.61 -1.16 16 4 C -0.15 -3.28 4.88 29.91 0.15 -3.13 16 5 C 0.40 12.84 6.08 26.25 0.16 13.00 16 6 O -0.53 -21.08 17.82 -3.64 -0.06 -21.14 16 7 C -0.30 -10.73 8.40 22.17 0.19 -10.54 16 8 C 0.11 3.45 4.54 -18.44 -0.08 3.37 16 9 C -0.23 -9.45 5.26 -20.01 -0.11 -9.56 16 10 C -0.07 -3.10 9.69 22.32 0.22 -2.88 16 11 C -0.19 -9.80 8.62 22.46 0.19 -9.60 16 12 C 0.09 4.77 5.58 -21.26 -0.12 4.65 16 13 C -0.49 -25.42 9.03 23.40 0.21 -25.21 16 14 H 0.08 3.99 7.91 -2.91 -0.02 3.97 16 15 C 0.04 1.85 5.13 85.40 0.44 2.29 16 16 N -0.81 -40.54 10.95 21.90 0.24 -40.31 16 17 Si 0.98 36.10 29.60 68.60 2.03 38.13 16 18 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 21 C -0.25 -12.03 9.73 22.46 0.22 -11.81 16 22 C -0.06 -2.63 9.64 22.32 0.22 -2.41 16 23 C -0.09 -2.21 4.65 29.84 0.14 -2.07 16 24 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.03 0.94 6.12 -2.39 -0.01 0.92 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.12 2.10 8.14 -2.38 -0.02 2.09 16 32 H 0.10 3.90 8.04 -2.91 -0.02 3.88 16 33 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 34 H 0.10 5.47 6.16 -2.91 -0.02 5.45 16 35 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 36 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 38 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -60.98 322.20 6.20 -54.77 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 1.03 Total: 27.30 kcal Atomic # 6 Polarization: -61.73 SS G_CDS: 2.97 Total: -58.76 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.24 Total: -40.31 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.06 Total: -21.14 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -60.98 6.20 -54.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242316916.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.077 kcal (2) G-P(sol) polarization free energy of solvation -60.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds