Wall clock time and date at job start Mon Mar 30 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.56517 * 2 1 4 4 C 1.53199 * 109.57118 * 239.75992 * 2 1 3 5 5 C 1.50703 * 109.05912 * 183.34805 * 4 2 1 6 6 O 1.21444 * 119.75044 * 208.77509 * 5 4 2 7 7 C 1.40693 * 120.50066 * 28.74695 * 5 4 2 8 8 C 1.34876 * 121.59789 * 0.28911 * 7 5 4 9 9 C 1.47032 * 119.41051 * 180.23367 * 8 7 5 10 10 C 1.39927 * 120.18145 * 64.99039 * 9 8 7 11 11 C 1.37856 * 119.81694 * 180.02562 * 10 9 8 12 12 C 1.38421 * 120.18122 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.81964 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47064 * 90.00349 * 13 12 11 15 15 H 1.07998 * 119.99501 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 359.72901 * 16 14 13 19 19 H 1.48502 * 109.46964 * 270.27509 * 18 16 14 20 20 H 1.48505 * 109.47036 * 30.26897 * 18 16 14 21 21 H 1.48490 * 109.47395 * 150.27411 * 18 16 14 22 22 C 1.38421 * 120.36252 * 0.25675 * 12 11 10 23 23 C 1.37869 * 120.17689 * 359.48582 * 22 12 11 24 24 C 1.50528 * 121.17946 * 0.49875 * 8 7 5 25 25 H 1.09000 * 109.47165 * 180.24131 * 1 2 3 26 26 H 1.09001 * 109.47582 * 300.23760 * 1 2 3 27 27 H 1.08996 * 109.47516 * 60.24320 * 1 2 3 28 28 H 1.08998 * 109.53752 * 63.47160 * 4 2 1 29 29 H 1.08997 * 109.60704 * 303.26317 * 4 2 1 30 30 H 1.07999 * 119.19794 * 180.25688 * 7 5 4 31 31 H 1.08004 * 120.09229 * 0.04992 * 10 9 8 32 32 H 1.08003 * 119.91437 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47406 * 330.00652 * 13 12 11 34 34 H 1.09001 * 109.47125 * 209.99998 * 13 12 11 35 35 H 0.96999 * 120.00235 * 179.72806 * 17 16 14 36 36 H 1.08001 * 119.91140 * 179.74328 * 22 12 11 37 37 H 1.07998 * 120.08599 * 180.25968 * 23 22 12 38 38 H 1.08996 * 109.46764 * 89.93628 * 24 8 7 39 39 H 1.09001 * 109.46737 * 209.91524 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0431 -0.7270 -1.2471 5 6 3.5478 -0.7925 -1.1942 6 8 4.1862 -0.8260 -2.2268 7 6 4.2186 -0.8144 0.0423 8 6 3.5468 -0.7839 1.2114 9 6 4.2968 -0.8036 2.4759 10 6 5.1343 0.2652 2.8138 11 6 5.8344 0.2386 4.0011 12 6 5.7111 -0.8417 4.8576 13 6 6.4807 -0.8625 6.1531 14 6 5.6524 -0.2266 7.2398 15 1 4.6675 0.1549 7.0145 16 6 6.1520 -0.1318 8.5213 17 7 5.4294 0.4236 9.4694 18 14 7.8526 -0.7984 8.9125 19 1 7.7444 -2.2223 9.3200 20 1 8.7149 -0.6925 7.7081 21 1 8.4504 -0.0106 10.0202 22 6 4.8893 -1.9057 4.5281 23 6 4.1782 -1.8922 3.3470 24 6 2.0426 -0.7359 1.2448 25 1 -0.3633 -1.0277 0.0043 26 1 -0.3634 0.5175 0.8878 27 1 -0.3634 0.5100 -0.8921 28 1 1.7329 -0.1833 -2.1394 29 1 1.6350 -1.7373 -1.2754 30 1 5.2977 -0.8573 0.0556 31 1 5.2316 1.1089 2.1465 32 1 6.4816 1.0626 4.2633 33 1 7.4104 -0.3064 6.0325 34 1 6.7067 -1.8936 6.4250 35 1 5.7793 0.4868 10.3719 36 1 4.8017 -2.7468 5.1999 37 1 3.5342 -2.7212 3.0933 38 1 1.6470 -1.7514 1.2599 39 1 1.7159 -0.2056 2.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242738937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:08 Heat of formation + Delta-G solvation = -22.691752 kcal Electronic energy + Delta-G solvation = -19360.898101 eV Core-core repulsion = 16425.489212 eV Total energy + Delta-G solvation = -2935.408889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32342 -38.83045 -37.04957 -34.23091 -32.81156 -31.06263 -30.55352 -29.31428 -27.33314 -27.07856 -23.74377 -22.23933 -21.60721 -21.24033 -20.05014 -18.06087 -16.85203 -16.65358 -15.75585 -15.45998 -15.12936 -14.75560 -14.62192 -14.40320 -14.16681 -13.50170 -13.06146 -13.02011 -12.89261 -12.60177 -12.41192 -12.34592 -12.29259 -11.77825 -11.54553 -11.43087 -11.10609 -10.95283 -10.82417 -10.42216 -10.13387 -10.07636 -9.66312 -9.47664 -9.28568 -8.65739 -8.53087 -7.88004 -6.14653 -4.14745 0.66319 1.76743 1.85447 2.86973 3.23477 3.31915 3.33957 4.10380 4.16136 4.29340 4.34970 4.51644 4.57658 4.79425 5.09832 5.10629 5.16274 5.25332 5.26446 5.30212 5.33564 5.40327 5.44859 5.69033 5.70700 5.79619 5.88334 5.92894 5.97725 6.00362 6.10808 6.28924 6.39322 6.47189 6.79691 6.82303 6.91203 6.91938 7.42005 7.45421 7.51020 7.61541 8.40688 8.89593 9.45132 10.98082 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.003550 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.750734 B = 7885.707496 C = 8346.692208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.080 0.920 4 C -0.165 4.165 5 C 0.392 3.608 6 O -0.477 6.477 7 C -0.258 4.258 8 C 0.051 3.949 9 C -0.116 4.116 10 C -0.096 4.096 11 C -0.122 4.122 12 C -0.015 4.015 13 C 0.011 3.989 14 C -0.515 4.515 15 H 0.074 0.926 16 C 0.070 3.930 17 N -0.898 5.898 18 Si 0.878 3.122 19 H -0.275 1.275 20 H -0.265 1.265 21 H -0.286 1.286 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.099 4.099 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.030 0.970 34 H 0.025 0.975 35 H 0.265 0.735 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 -2.773 -17.304 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.203 4.203 5 C 0.274 3.726 6 O -0.356 6.356 7 C -0.277 4.277 8 C 0.050 3.950 9 C -0.116 4.116 10 C -0.114 4.114 11 C -0.140 4.140 12 C -0.015 4.015 13 C -0.027 4.027 14 C -0.553 4.553 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.189 1.189 21 H -0.212 1.212 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.299 -2.735 -17.639 19.284 hybrid contribution 0.848 -0.280 0.602 1.077 sum -6.451 -3.016 -17.036 18.465 Atomic orbital electron populations 1.21821 0.93963 1.02320 1.02353 1.21265 0.96476 0.99880 0.92833 0.90139 1.22228 0.94826 1.03200 1.00029 1.20931 0.91214 0.71611 0.88811 1.90579 1.69918 1.37900 1.37203 1.22160 1.01712 1.10935 0.92852 1.21355 0.94895 0.86240 0.92465 1.18715 1.01076 0.97108 0.94739 1.21141 0.95908 0.97228 0.97092 1.21013 1.00557 0.98677 0.93774 1.20478 0.93946 0.91891 0.95153 1.18877 0.95665 0.97684 0.90429 1.20888 1.03436 1.39157 0.91847 0.90786 1.24993 0.97399 0.94651 0.96122 1.69892 1.37556 1.44179 1.02005 0.86806 0.84983 0.79318 0.78417 1.20105 1.18921 1.21181 1.21011 0.97506 0.99396 0.96172 1.21076 0.99432 0.97094 0.93885 1.21022 0.90837 1.02250 0.99406 0.92278 0.91918 0.92254 0.88958 0.88275 0.85105 0.86542 0.85877 0.95225 0.95661 0.92504 0.85885 0.86578 0.88889 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.21 37.15 0.34 -0.56 16 2 C -0.09 -0.67 2.79 -90.30 -0.25 -0.92 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.17 -1.41 5.37 -27.78 -0.15 -1.56 16 5 C 0.39 4.77 6.81 -33.38 -0.23 4.54 16 6 O -0.48 -7.47 17.82 5.41 0.10 -7.38 16 7 C -0.26 -3.15 9.26 -39.85 -0.37 -3.52 16 8 C 0.05 0.59 5.28 -102.34 -0.54 0.05 16 9 C -0.12 -1.65 5.24 -105.07 -0.55 -2.20 16 10 C -0.10 -1.46 9.72 -39.09 -0.38 -1.84 16 11 C -0.12 -2.18 9.67 -39.65 -0.38 -2.57 16 12 C -0.01 -0.29 5.08 -104.49 -0.53 -0.82 16 13 C 0.01 0.24 4.16 -29.03 -0.12 0.12 16 14 C -0.52 -14.15 9.65 -34.44 -0.33 -14.48 16 15 H 0.07 2.23 7.98 -52.49 -0.42 1.81 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 18 Si 0.88 20.82 27.46 -169.99 -4.67 16.15 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.26 -6.00 6.55 56.52 0.37 -5.63 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C -0.12 -2.16 9.67 -39.65 -0.38 -2.54 16 23 C -0.10 -1.43 9.77 -39.08 -0.38 -1.81 16 24 C -0.10 -0.88 5.15 -27.75 -0.14 -1.02 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.13 1.72 8.04 -52.49 -0.42 1.30 16 31 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.03 0.67 7.16 -51.93 -0.37 0.30 16 34 H 0.03 0.56 7.50 -51.93 -0.39 0.17 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -31.04 328.63 -9.19 -40.23 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.84 Total: -0.58 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -4.50 Total: -27.26 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.77 Total: -26.11 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.10 Total: -7.38 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.04 -9.19 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242738937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.534 kcal (2) G-P(sol) polarization free energy of solvation -31.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds