Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.56517 * 2 1 4 4 C 1.53199 * 109.57118 * 239.75992 * 2 1 3 5 5 C 1.50703 * 109.05912 * 183.34805 * 4 2 1 6 6 O 1.21444 * 119.75044 * 208.77509 * 5 4 2 7 7 C 1.40693 * 120.50066 * 28.74695 * 5 4 2 8 8 C 1.34876 * 121.59789 * 0.28911 * 7 5 4 9 9 C 1.47032 * 119.41051 * 180.23367 * 8 7 5 10 10 C 1.39927 * 120.18145 * 64.99039 * 9 8 7 11 11 C 1.37856 * 119.81694 * 180.02562 * 10 9 8 12 12 C 1.38421 * 120.18122 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.81964 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47064 * 90.00349 * 13 12 11 15 15 H 1.07998 * 119.99501 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00481 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 359.72901 * 16 14 13 19 19 H 1.48502 * 109.46964 * 270.27509 * 18 16 14 20 20 H 1.48505 * 109.47036 * 30.26897 * 18 16 14 21 21 H 1.48490 * 109.47395 * 150.27411 * 18 16 14 22 22 C 1.38421 * 120.36252 * 0.25675 * 12 11 10 23 23 C 1.37869 * 120.17689 * 359.48582 * 22 12 11 24 24 C 1.50528 * 121.17946 * 0.49875 * 8 7 5 25 25 H 1.09000 * 109.47165 * 180.24131 * 1 2 3 26 26 H 1.09001 * 109.47582 * 300.23760 * 1 2 3 27 27 H 1.08996 * 109.47516 * 60.24320 * 1 2 3 28 28 H 1.08998 * 109.53752 * 63.47160 * 4 2 1 29 29 H 1.08997 * 109.60704 * 303.26317 * 4 2 1 30 30 H 1.07999 * 119.19794 * 180.25688 * 7 5 4 31 31 H 1.08004 * 120.09229 * 0.04992 * 10 9 8 32 32 H 1.08003 * 119.91437 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47406 * 330.00652 * 13 12 11 34 34 H 1.09001 * 109.47125 * 209.99998 * 13 12 11 35 35 H 0.96999 * 120.00235 * 179.72806 * 17 16 14 36 36 H 1.08001 * 119.91140 * 179.74328 * 22 12 11 37 37 H 1.07998 * 120.08599 * 180.25968 * 23 22 12 38 38 H 1.08996 * 109.46764 * 89.93628 * 24 8 7 39 39 H 1.09001 * 109.46737 * 209.91524 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0431 -0.7270 -1.2471 5 6 3.5478 -0.7925 -1.1942 6 8 4.1862 -0.8260 -2.2268 7 6 4.2186 -0.8144 0.0423 8 6 3.5468 -0.7839 1.2114 9 6 4.2968 -0.8036 2.4759 10 6 5.1343 0.2652 2.8138 11 6 5.8344 0.2386 4.0011 12 6 5.7111 -0.8417 4.8576 13 6 6.4807 -0.8625 6.1531 14 6 5.6524 -0.2266 7.2398 15 1 4.6675 0.1549 7.0145 16 6 6.1520 -0.1318 8.5213 17 7 5.4294 0.4236 9.4694 18 14 7.8526 -0.7984 8.9125 19 1 7.7444 -2.2223 9.3200 20 1 8.7149 -0.6925 7.7081 21 1 8.4504 -0.0106 10.0202 22 6 4.8893 -1.9057 4.5281 23 6 4.1782 -1.8922 3.3470 24 6 2.0426 -0.7359 1.2448 25 1 -0.3633 -1.0277 0.0043 26 1 -0.3634 0.5175 0.8878 27 1 -0.3634 0.5100 -0.8921 28 1 1.7329 -0.1833 -2.1394 29 1 1.6350 -1.7373 -1.2754 30 1 5.2977 -0.8573 0.0556 31 1 5.2316 1.1089 2.1465 32 1 6.4816 1.0626 4.2633 33 1 7.4104 -0.3064 6.0325 34 1 6.7067 -1.8936 6.4250 35 1 5.7793 0.4868 10.3719 36 1 4.8017 -2.7468 5.1999 37 1 3.5342 -2.7212 3.0933 38 1 1.6470 -1.7514 1.2599 39 1 1.7159 -0.2056 2.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242738937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -38.383019 kcal Electronic energy + Delta-G solvation = -19361.578525 eV Core-core repulsion = 16425.489212 eV Total energy + Delta-G solvation = -2936.089313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27485 -40.08786 -37.99261 -35.65124 -34.41072 -32.52848 -31.85074 -30.33229 -28.76360 -27.73218 -25.29098 -23.49828 -23.00243 -21.99400 -21.31932 -18.98409 -18.91600 -17.69967 -16.79653 -16.61961 -16.23908 -16.06827 -15.92233 -15.66293 -15.31590 -14.75393 -14.33114 -14.21945 -14.10361 -13.79239 -13.56735 -13.51200 -13.10929 -13.03005 -12.87060 -12.52701 -12.42674 -11.93551 -11.89246 -11.79937 -11.67603 -11.59440 -11.49463 -10.79920 -10.60613 -10.31160 -9.82695 -9.25827 -8.31107 -6.36401 -0.33638 0.48821 0.54921 1.36157 1.38010 1.49401 1.93027 2.34188 2.84955 3.03396 3.25882 3.47388 3.71415 3.87920 3.96998 4.03885 4.12004 4.24535 4.36326 4.42926 4.59091 4.61911 4.68066 4.69874 4.79081 4.84455 4.96991 4.99410 5.05749 5.12548 5.15530 5.21710 5.28316 5.31745 5.40605 5.48081 5.54122 5.54681 5.58317 5.95348 6.08323 6.25758 6.58424 6.69900 7.27349 8.85198 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.003550 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.750734 B = 7885.707496 C = 8346.692208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.394 3.606 6 O -0.520 6.520 7 C -0.266 4.266 8 C 0.065 3.935 9 C -0.106 4.106 10 C -0.097 4.097 11 C -0.135 4.135 12 C -0.052 4.052 13 C 0.016 3.984 14 C -0.520 4.520 15 H 0.030 0.970 16 C 0.009 3.991 17 N -0.948 5.948 18 Si 0.949 3.051 19 H -0.264 1.264 20 H -0.247 1.247 21 H -0.284 1.284 22 C -0.134 4.134 23 C -0.090 4.090 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.137 0.863 32 H 0.120 0.880 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.268 0.732 36 H 0.125 0.875 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 -3.925 -18.933 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 H 0.093 0.907 4 C -0.195 4.195 5 C 0.279 3.721 6 O -0.403 6.403 7 C -0.285 4.285 8 C 0.064 3.936 9 C -0.106 4.106 10 C -0.115 4.115 11 C -0.154 4.154 12 C -0.052 4.052 13 C -0.021 4.021 14 C -0.557 4.557 15 H 0.048 0.952 16 C -0.188 4.188 17 N -0.588 5.588 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.171 1.171 21 H -0.209 1.209 22 C -0.152 4.152 23 C -0.108 4.108 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.155 0.845 32 H 0.138 0.862 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.168 0.832 38 H 0.135 0.865 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.126 -3.890 -19.278 21.279 hybrid contribution 1.001 0.114 1.044 1.450 sum -7.125 -3.776 -18.234 19.938 Atomic orbital electron populations 1.21799 0.92276 1.03255 1.02803 1.21228 0.97703 0.99212 0.91662 0.90748 1.22231 0.91686 1.04729 1.00839 1.21391 0.92999 0.69894 0.87826 1.90572 1.71132 1.40238 1.38327 1.22104 1.01194 1.11714 0.93474 1.21387 0.96286 0.85296 0.90640 1.19023 0.99927 0.96242 0.95398 1.21361 0.95408 0.98351 0.96374 1.21072 1.01357 0.98217 0.94707 1.20348 0.96014 0.94040 0.94794 1.18716 0.95314 0.97250 0.90798 1.21131 1.02282 1.38797 0.93532 0.95150 1.25954 1.01994 0.94973 0.95884 1.70047 1.39960 1.46157 1.02634 0.85679 0.79556 0.78902 0.78687 1.18896 1.17079 1.20935 1.21131 0.97630 0.98925 0.97473 1.21382 0.98784 0.98045 0.92585 1.21148 0.88439 1.03845 1.00078 0.91115 0.91862 0.91510 0.88092 0.86090 0.86667 0.84523 0.86239 0.95191 0.95006 0.92326 0.85676 0.83151 0.86503 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.21 71.98 0.66 -0.56 16 2 C -0.08 -0.96 2.79 -10.59 -0.03 -0.99 16 3 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 4 C -0.16 -2.19 5.37 29.92 0.16 -2.03 16 5 C 0.39 8.90 6.81 26.29 0.18 9.07 16 6 O -0.52 -15.98 17.82 -3.54 -0.06 -16.04 16 7 C -0.27 -6.06 9.26 22.10 0.20 -5.85 16 8 C 0.06 1.33 5.28 -18.38 -0.10 1.23 16 9 C -0.11 -2.79 5.24 -20.15 -0.11 -2.90 16 10 C -0.10 -2.87 9.72 22.59 0.22 -2.65 16 11 C -0.14 -4.88 9.67 22.22 0.21 -4.66 16 12 C -0.05 -2.08 5.08 -19.78 -0.10 -2.18 16 13 C 0.02 0.76 4.16 29.10 0.12 0.88 16 14 C -0.52 -29.48 9.65 25.60 0.25 -29.24 16 15 H 0.03 1.92 7.98 -2.91 -0.02 1.90 16 16 C 0.01 0.53 5.47 84.65 0.46 0.99 16 17 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 18 Si 0.95 43.14 27.46 68.60 1.88 45.02 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.25 -10.45 6.55 99.48 0.65 -9.80 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 C -0.13 -4.61 9.67 22.23 0.22 -4.39 16 23 C -0.09 -2.47 9.77 22.59 0.22 -2.25 16 24 C -0.10 -1.40 5.15 29.94 0.15 -1.25 16 25 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.12 2.96 8.04 -2.91 -0.02 2.94 16 31 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 32 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 33 H 0.03 1.36 7.16 -2.39 -0.02 1.35 16 34 H 0.03 1.41 7.50 -2.39 -0.02 1.39 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 37 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 Total: -1.00 -69.95 328.63 5.81 -64.14 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.96 Total: 11.87 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 2.73 Total: -46.77 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.30 Total: -58.21 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.06 Total: -16.04 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -69.95 5.81 -64.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242738937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -69.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds