Wall clock time and date at job start Mon Mar 30 2020 02:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.66898 * 2 1 4 4 C 1.53194 * 109.57010 * 120.30406 * 2 1 3 5 5 C 1.50699 * 109.05964 * 176.64699 * 4 2 1 6 6 O 1.21445 * 119.74805 * 151.22444 * 5 4 2 7 7 C 1.40683 * 120.50271 * 330.96902 * 5 4 2 8 8 C 1.34873 * 121.59816 * 0.30646 * 7 5 4 9 9 C 1.47039 * 119.41543 * 179.47228 * 8 7 5 10 10 C 1.39952 * 120.17366 * 244.75235 * 9 8 7 11 11 C 1.37843 * 119.81267 * 179.97438 * 10 9 8 12 12 C 1.38444 * 120.17779 * 359.74524 * 11 10 9 13 13 C 1.38396 * 120.36554 * 0.50902 * 12 11 10 14 14 C 1.50706 * 119.90920 * 179.76276 * 13 12 11 15 15 C 1.50698 * 109.47294 * 269.72405 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.37882 * 120.17734 * 359.49302 * 13 12 11 24 24 C 1.50534 * 121.18057 * 359.19416 * 8 7 5 25 25 H 1.09000 * 109.47081 * 180.30087 * 1 2 3 26 26 H 1.08994 * 109.46964 * 300.30497 * 1 2 3 27 27 H 1.08997 * 109.46872 * 60.30372 * 1 2 3 28 28 H 1.09000 * 109.54031 * 296.52951 * 4 2 1 29 29 H 1.09003 * 109.53537 * 56.77382 * 4 2 1 30 30 H 1.08004 * 119.20720 * 180.02562 * 7 5 4 31 31 H 1.07998 * 120.09611 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.91026 * 180.02562 * 11 10 9 33 33 H 1.08005 * 119.81951 * 180.27576 * 12 11 10 34 34 H 1.09001 * 109.46953 * 149.72963 * 14 13 12 35 35 H 1.08993 * 109.46894 * 29.72594 * 14 13 12 36 36 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 37 37 H 1.08006 * 120.08835 * 180.27723 * 23 13 12 38 38 H 1.08991 * 109.46550 * 150.09183 * 24 8 7 39 39 H 1.09003 * 109.46305 * 270.08319 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0432 -0.7283 1.2462 5 6 3.5478 -0.7939 1.1933 6 8 4.1862 -0.8286 2.2259 7 6 4.2184 -0.8206 -0.0432 8 6 3.5468 -0.7827 -1.2122 9 6 4.2968 -0.8013 -2.4768 10 6 4.2564 0.3036 -3.3349 11 6 4.9628 0.2784 -4.5184 12 6 5.7149 -0.8337 -4.8563 13 6 5.7560 -1.9324 -4.0157 14 6 6.5739 -3.1396 -4.3963 15 6 5.7185 -4.0977 -5.1846 16 1 4.6860 -3.8564 -5.3898 17 6 6.2543 -5.2819 -5.6446 18 7 7.5117 -5.5755 -5.3952 19 14 5.1942 -6.4692 -6.6223 20 1 6.0001 -7.6589 -6.9973 21 1 4.7022 -5.7966 -7.8515 22 1 4.0373 -6.8963 -5.7950 23 6 5.0551 -1.9232 -2.8284 24 6 2.0429 -0.7279 -1.2457 25 1 -0.3633 -1.0276 0.0054 26 1 -0.3633 0.5185 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.7330 -0.1857 2.1392 29 1 1.6349 -1.7387 1.2719 30 1 5.2973 -0.8681 -0.0567 31 1 3.6734 1.1734 -3.0707 32 1 4.9330 1.1302 -5.1815 33 1 6.2697 -0.8455 -5.7829 34 1 6.9350 -3.6330 -3.4939 35 1 7.4229 -2.8264 -5.0038 36 1 8.0623 -4.9588 -4.8878 37 1 5.0918 -2.7796 -2.1713 38 1 1.7187 -0.1930 -2.1383 39 1 1.6428 -1.7417 -1.2642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242739984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:11 Heat of formation + Delta-G solvation = -30.325634 kcal Electronic energy + Delta-G solvation = -19579.978363 eV Core-core repulsion = 16644.238444 eV Total energy + Delta-G solvation = -2935.739919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29309 -38.82178 -37.01547 -34.18138 -33.26603 -31.23848 -30.15960 -28.71897 -27.12217 -26.66903 -23.55682 -23.16452 -21.51868 -21.21861 -19.91176 -17.95246 -16.96272 -16.35093 -15.79790 -15.64558 -15.30141 -14.73637 -14.47640 -14.33541 -13.77704 -13.44467 -13.28683 -13.10266 -12.85674 -12.54362 -12.47615 -12.26795 -12.02207 -11.53619 -11.40773 -11.28096 -11.12316 -11.07032 -10.77735 -10.50328 -10.21757 -9.98813 -9.60401 -9.34464 -9.01725 -8.44037 -8.33442 -7.93766 -6.44353 -4.16370 0.69639 1.73051 1.89858 2.92714 3.39674 3.40977 3.60101 4.11534 4.17254 4.31170 4.49659 4.52570 4.60177 4.81370 5.12471 5.14266 5.25226 5.28448 5.31538 5.31951 5.34692 5.42098 5.48086 5.69439 5.71484 5.79628 5.82804 5.95196 5.99690 6.03235 6.14868 6.31319 6.40684 6.51368 6.79261 6.87116 6.93608 7.09546 7.44375 7.52650 7.56562 8.03960 8.35656 8.76651 9.54907 10.94686 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.004211 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.098251 B = 6647.359479 C = 6834.196359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 H 0.079 0.921 4 C -0.165 4.165 5 C 0.392 3.608 6 O -0.475 6.475 7 C -0.253 4.253 8 C 0.045 3.955 9 C -0.088 4.088 10 C -0.126 4.126 11 C -0.122 4.122 12 C -0.113 4.113 13 C -0.028 4.028 14 C 0.034 3.966 15 C -0.594 4.594 16 H 0.051 0.949 17 C 0.018 3.982 18 N -0.909 5.909 19 Si 1.070 2.930 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.098 4.098 24 C -0.097 4.097 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.020 0.980 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 12.571 7.581 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.203 4.203 5 C 0.274 3.726 6 O -0.354 6.354 7 C -0.272 4.272 8 C 0.044 3.956 9 C -0.088 4.088 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.131 4.131 13 C -0.028 4.028 14 C -0.003 4.003 15 C -0.633 4.633 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.545 5.545 19 Si 0.898 3.102 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.116 4.116 24 C -0.134 4.134 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.528 11.087 7.340 18.269 hybrid contribution 0.022 1.459 0.585 1.572 sum -12.506 12.546 7.925 19.406 Atomic orbital electron populations 1.21820 0.93971 1.02422 1.02207 1.21211 0.96433 0.99788 0.93015 0.90288 1.22227 0.94841 1.03311 0.99925 1.20909 0.91193 0.71682 0.88785 1.90581 1.69902 1.37742 1.37150 1.22173 1.01830 1.10321 0.92854 1.21347 0.94911 0.86861 0.92488 1.18867 0.99854 0.95899 0.94160 1.20916 1.01472 0.97441 0.94557 1.20960 0.98042 0.98332 0.96620 1.21244 0.99319 0.92989 0.99584 1.20398 0.94942 0.95478 0.91982 1.18502 0.94727 0.90246 0.96813 1.21868 0.98546 1.05158 1.37680 0.93099 1.25885 0.97709 0.97813 0.97230 1.70790 1.06756 1.39139 1.37796 0.83527 0.74793 0.75944 0.75979 1.20646 1.21337 1.21367 1.21202 0.96374 0.96702 0.97372 1.20966 0.90738 1.02555 0.99113 0.92173 0.92249 0.92057 0.88924 0.88132 0.85016 0.86695 0.86497 0.86253 0.96165 0.96094 0.92024 0.86153 0.89303 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.21 37.16 0.34 -0.59 16 2 C -0.09 -0.70 2.78 -90.46 -0.25 -0.95 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.17 -1.57 5.37 -27.78 -0.15 -1.72 16 5 C 0.39 5.27 6.81 -33.39 -0.23 5.04 16 6 O -0.47 -8.03 17.82 5.41 0.10 -7.94 16 7 C -0.25 -3.50 9.26 -39.85 -0.37 -3.87 16 8 C 0.04 0.58 5.28 -102.33 -0.54 0.04 16 9 C -0.09 -1.37 5.25 -105.06 -0.55 -1.92 16 10 C -0.13 -1.81 9.65 -39.08 -0.38 -2.18 16 11 C -0.12 -1.85 10.03 -39.65 -0.40 -2.25 16 12 C -0.11 -2.10 9.69 -39.45 -0.38 -2.48 16 13 C -0.03 -0.59 5.06 -104.69 -0.53 -1.12 16 14 C 0.03 0.85 4.41 -29.03 -0.13 0.72 16 15 C -0.59 -16.50 9.09 -34.44 -0.31 -16.81 16 16 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 18 N -0.91 -27.25 13.65 55.43 0.76 -26.50 16 19 Si 1.07 24.81 29.90 -169.99 -5.08 19.73 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.10 -1.86 9.36 -39.09 -0.37 -2.23 16 24 C -0.10 -0.95 5.15 -27.90 -0.14 -1.09 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.13 1.98 8.04 -52.48 -0.42 1.56 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 34 H 0.02 0.53 7.95 -51.93 -0.41 0.11 16 35 H 0.02 0.54 7.95 -51.93 -0.41 0.13 16 36 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 37 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.09 0.80 7.97 -51.93 -0.41 0.39 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -31.48 330.68 -9.54 -41.02 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.81 Total: -0.29 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: -4.48 Total: -31.01 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.76 Total: -26.50 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.10 Total: -7.94 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.48 -9.54 -41.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.693 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds