Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.66898 * 2 1 4 4 C 1.53194 * 109.57010 * 120.30406 * 2 1 3 5 5 C 1.50699 * 109.05964 * 176.64699 * 4 2 1 6 6 O 1.21445 * 119.74805 * 151.22444 * 5 4 2 7 7 C 1.40683 * 120.50271 * 330.96902 * 5 4 2 8 8 C 1.34873 * 121.59816 * 0.30646 * 7 5 4 9 9 C 1.47039 * 119.41543 * 179.47228 * 8 7 5 10 10 C 1.39952 * 120.17366 * 244.75235 * 9 8 7 11 11 C 1.37843 * 119.81267 * 179.97438 * 10 9 8 12 12 C 1.38444 * 120.17779 * 359.74524 * 11 10 9 13 13 C 1.38396 * 120.36554 * 0.50902 * 12 11 10 14 14 C 1.50706 * 119.90920 * 179.76276 * 13 12 11 15 15 C 1.50698 * 109.47294 * 269.72405 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.37882 * 120.17734 * 359.49302 * 13 12 11 24 24 C 1.50534 * 121.18057 * 359.19416 * 8 7 5 25 25 H 1.09000 * 109.47081 * 180.30087 * 1 2 3 26 26 H 1.08994 * 109.46964 * 300.30497 * 1 2 3 27 27 H 1.08997 * 109.46872 * 60.30372 * 1 2 3 28 28 H 1.09000 * 109.54031 * 296.52951 * 4 2 1 29 29 H 1.09003 * 109.53537 * 56.77382 * 4 2 1 30 30 H 1.08004 * 119.20720 * 180.02562 * 7 5 4 31 31 H 1.07998 * 120.09611 * 359.97438 * 10 9 8 32 32 H 1.08001 * 119.91026 * 180.02562 * 11 10 9 33 33 H 1.08005 * 119.81951 * 180.27576 * 12 11 10 34 34 H 1.09001 * 109.46953 * 149.72963 * 14 13 12 35 35 H 1.08993 * 109.46894 * 29.72594 * 14 13 12 36 36 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 37 37 H 1.08006 * 120.08835 * 180.27723 * 23 13 12 38 38 H 1.08991 * 109.46550 * 150.09183 * 24 8 7 39 39 H 1.09003 * 109.46305 * 270.08319 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8969 1.0263 0.0000 4 6 2.0432 -0.7283 1.2462 5 6 3.5478 -0.7939 1.1933 6 8 4.1862 -0.8286 2.2259 7 6 4.2184 -0.8206 -0.0432 8 6 3.5468 -0.7827 -1.2122 9 6 4.2968 -0.8013 -2.4768 10 6 4.2564 0.3036 -3.3349 11 6 4.9628 0.2784 -4.5184 12 6 5.7149 -0.8337 -4.8563 13 6 5.7560 -1.9324 -4.0157 14 6 6.5739 -3.1396 -4.3963 15 6 5.7185 -4.0977 -5.1846 16 1 4.6860 -3.8564 -5.3898 17 6 6.2543 -5.2819 -5.6446 18 7 7.5117 -5.5755 -5.3952 19 14 5.1942 -6.4692 -6.6223 20 1 6.0001 -7.6589 -6.9973 21 1 4.7022 -5.7966 -7.8515 22 1 4.0373 -6.8963 -5.7950 23 6 5.0551 -1.9232 -2.8284 24 6 2.0429 -0.7279 -1.2457 25 1 -0.3633 -1.0276 0.0054 26 1 -0.3633 0.5185 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.7330 -0.1857 2.1392 29 1 1.6349 -1.7387 1.2719 30 1 5.2973 -0.8681 -0.0567 31 1 3.6734 1.1734 -3.0707 32 1 4.9330 1.1302 -5.1815 33 1 6.2697 -0.8455 -5.7829 34 1 6.9350 -3.6330 -3.4939 35 1 7.4229 -2.8264 -5.0038 36 1 8.0623 -4.9588 -4.8878 37 1 5.0918 -2.7796 -2.1713 38 1 1.7187 -0.1930 -2.1383 39 1 1.6428 -1.7417 -1.2642 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242739984.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -46.153297 kcal Electronic energy + Delta-G solvation = -19580.664702 eV Core-core repulsion = 16644.238444 eV Total energy + Delta-G solvation = -2936.426258 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.34069 -40.16135 -38.03349 -35.94543 -34.51782 -32.89578 -31.30626 -29.75410 -28.55770 -27.73155 -25.30243 -24.61152 -22.81909 -22.04049 -21.22662 -19.09370 -18.78173 -17.65179 -16.99437 -16.69757 -16.35926 -15.99846 -15.79896 -15.60999 -15.36587 -15.13460 -14.33876 -14.20813 -14.10748 -13.67631 -13.46691 -13.41191 -13.10145 -13.01661 -12.89460 -12.54201 -12.45619 -12.18802 -11.98172 -11.76987 -11.65611 -11.58582 -11.05910 -10.65996 -10.61283 -10.40798 -9.72180 -9.45936 -8.71028 -6.45994 -0.41876 0.41260 0.51177 1.50714 1.58870 1.78699 1.86836 2.52534 2.80731 3.10009 3.20014 3.41799 3.65358 3.84483 3.92321 4.00856 4.06355 4.22810 4.31509 4.42465 4.48259 4.58401 4.60953 4.67814 4.73283 4.78246 4.88969 4.95025 5.05187 5.09822 5.12419 5.14930 5.19596 5.29469 5.35686 5.47700 5.49421 5.54121 5.85421 5.87842 6.05508 6.10207 6.49056 6.52837 7.35136 8.65924 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.004211 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.098251 B = 6647.359479 C = 6834.196359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 H 0.085 0.915 4 C -0.159 4.159 5 C 0.393 3.607 6 O -0.521 6.521 7 C -0.272 4.272 8 C 0.061 3.939 9 C -0.083 4.083 10 C -0.109 4.109 11 C -0.108 4.108 12 C -0.129 4.129 13 C -0.063 4.063 14 C 0.039 3.961 15 C -0.604 4.604 16 H 0.049 0.951 17 C -0.035 4.035 18 N -0.935 5.935 19 Si 1.118 2.882 20 H -0.282 1.282 21 H -0.266 1.266 22 H -0.269 1.269 23 C -0.117 4.117 24 C -0.097 4.097 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.114 0.886 34 H -0.007 1.007 35 H 0.001 0.999 36 H 0.255 0.745 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.699 14.646 7.054 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.103 0.897 4 C -0.196 4.196 5 C 0.278 3.722 6 O -0.404 6.404 7 C -0.291 4.291 8 C 0.060 3.940 9 C -0.083 4.083 10 C -0.126 4.126 11 C -0.126 4.126 12 C -0.147 4.147 13 C -0.063 4.063 14 C 0.002 3.998 15 C -0.641 4.641 16 H 0.067 0.933 17 C -0.233 4.233 18 N -0.572 5.572 19 Si 0.938 3.062 20 H -0.208 1.208 21 H -0.191 1.191 22 H -0.194 1.194 23 C -0.136 4.136 24 C -0.133 4.133 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.124 0.876 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.133 0.867 34 H 0.012 0.988 35 H 0.019 0.981 36 H 0.064 0.936 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.364 13.190 6.812 22.094 hybrid contribution 1.246 0.910 0.764 1.722 sum -15.118 14.100 7.576 22.017 Atomic orbital electron populations 1.21798 0.91968 1.03044 1.03225 1.21188 0.97836 0.99455 0.91038 0.89708 1.22254 0.91188 1.04652 1.01530 1.21424 0.93245 0.69878 0.87607 1.90566 1.71256 1.40256 1.38290 1.22120 1.00938 1.11954 0.94044 1.21505 0.96749 0.85126 0.90577 1.19096 0.98767 0.95085 0.95328 1.21445 1.00185 0.97798 0.93214 1.21355 0.95995 0.97891 0.97328 1.21308 1.00542 0.93591 0.99228 1.20093 0.96786 0.95203 0.94189 1.18292 0.94588 0.91986 0.94952 1.22204 0.98662 1.05792 1.37459 0.93273 1.27486 0.98032 0.99980 0.97775 1.70920 1.07846 1.39240 1.39219 0.82934 0.73690 0.73919 0.75617 1.20757 1.19090 1.19406 1.21084 0.97827 0.97905 0.96735 1.21126 0.87629 1.03641 1.00931 0.91796 0.91322 0.91025 0.87625 0.86723 0.87611 0.82118 0.82429 0.86747 0.98849 0.98109 0.93557 0.88058 0.87365 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.21 71.98 0.66 -0.48 16 2 C -0.08 -0.94 2.78 -10.69 -0.03 -0.97 16 3 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.16 -2.60 5.37 29.91 0.16 -2.44 16 5 C 0.39 10.38 6.81 26.28 0.18 10.56 16 6 O -0.52 -18.05 17.82 -3.54 -0.06 -18.12 16 7 C -0.27 -7.50 9.26 22.09 0.20 -7.30 16 8 C 0.06 1.47 5.28 -18.38 -0.10 1.37 16 9 C -0.08 -2.44 5.25 -20.15 -0.11 -2.55 16 10 C -0.11 -2.68 9.65 22.59 0.22 -2.46 16 11 C -0.11 -2.94 10.03 22.23 0.22 -2.71 16 12 C -0.13 -4.74 9.69 22.36 0.22 -4.52 16 13 C -0.06 -2.75 5.06 -19.91 -0.10 -2.85 16 14 C 0.04 2.08 4.41 29.10 0.13 2.21 16 15 C -0.60 -34.77 9.09 25.60 0.23 -34.54 16 16 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 17 C -0.04 -2.05 5.46 84.65 0.46 -1.59 16 18 N -0.94 -58.41 13.65 21.45 0.29 -58.12 16 19 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C -0.12 -4.58 9.36 22.59 0.21 -4.37 16 24 C -0.10 -1.52 5.15 29.84 0.15 -1.36 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 3.41 8.04 -2.91 -0.02 3.38 16 31 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 34 H -0.01 -0.39 7.95 -2.39 -0.02 -0.41 16 35 H 0.00 0.04 7.95 -2.39 -0.02 0.02 16 36 H 0.25 16.18 7.22 -92.71 -0.67 15.51 16 37 H 0.10 4.20 8.06 -2.91 -0.02 4.17 16 38 H 0.11 1.36 7.97 -2.39 -0.02 1.34 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -73.31 330.68 6.12 -67.19 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.12 Total: 10.97 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 2.72 Total: -54.00 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.29 Total: -58.12 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.06 Total: -18.12 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -73.31 6.12 -67.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739984.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.037 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds