Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.66865 * 2 1 4 4 C 1.53194 * 109.57197 * 239.69079 * 2 1 3 5 5 C 1.50706 * 109.06272 * 183.34940 * 4 2 1 6 6 O 1.21435 * 119.75823 * 208.49883 * 5 4 2 7 7 C 1.40693 * 120.49775 * 28.77864 * 5 4 2 8 8 C 1.34878 * 121.59537 * 0.23365 * 7 5 4 9 9 C 1.47036 * 119.40670 * 180.25814 * 8 7 5 10 10 C 1.39952 * 120.17893 * 244.72068 * 9 8 7 11 11 C 1.37836 * 119.81892 * 179.79396 * 10 9 8 12 12 C 1.38451 * 120.17697 * 0.48425 * 11 10 9 13 13 C 1.38392 * 120.36433 * 359.74950 * 12 11 10 14 14 C 1.50705 * 119.91107 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46795 * 270.02206 * 14 13 12 16 16 H 1.07998 * 120.00973 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99545 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47173 * 59.99989 * 19 17 15 21 21 H 1.48499 * 109.46959 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47035 * 299.99831 * 19 17 15 23 23 C 1.37891 * 120.18108 * 0.02562 * 13 12 11 24 24 C 1.50530 * 121.18547 * 0.26013 * 8 7 5 25 25 H 1.09007 * 109.47325 * 180.30092 * 1 2 3 26 26 H 1.08994 * 109.47350 * 300.30497 * 1 2 3 27 27 H 1.09000 * 109.47183 * 60.30493 * 1 2 3 28 28 H 1.09004 * 109.53691 * 63.48112 * 4 2 1 29 29 H 1.08996 * 109.60953 * 303.26934 * 4 2 1 30 30 H 1.07995 * 119.20531 * 180.23840 * 7 5 4 31 31 H 1.08003 * 120.08805 * 0.02562 * 10 9 8 32 32 H 1.08003 * 119.91270 * 180.26225 * 11 10 9 33 33 H 1.08001 * 119.81523 * 179.76445 * 12 11 10 34 34 H 1.09002 * 109.47052 * 30.02020 * 14 13 12 35 35 H 1.08997 * 109.47346 * 150.02325 * 14 13 12 36 36 H 0.97003 * 119.99691 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.08854 * 179.97438 * 23 13 12 38 38 H 1.08998 * 109.46818 * 210.18593 * 24 8 7 39 39 H 1.09000 * 109.46678 * 90.19701 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0431 -0.7284 -1.2461 5 6 3.5478 -0.7939 -1.1933 6 8 4.1860 -0.8338 -2.2256 7 6 4.2186 -0.8151 0.0433 8 6 3.5467 -0.7827 1.2123 9 6 4.2967 -0.8011 2.4769 10 6 4.1720 -1.8853 3.3531 11 6 4.8818 -1.8969 4.5346 12 6 5.7087 -0.8352 4.8601 13 6 5.8339 0.2429 4.0014 14 6 6.7365 1.3933 4.3662 15 6 5.9519 2.4214 5.1398 16 1 4.9047 2.2581 5.3471 17 6 6.5715 3.5704 5.5841 18 7 7.8472 3.7687 5.3331 19 14 5.5993 4.8445 6.5436 20 1 5.0596 4.2264 7.7813 21 1 6.4886 5.9781 6.9030 22 1 4.4765 5.3422 5.7088 23 6 5.1343 0.2678 2.8135 24 6 2.0428 -0.7280 1.2457 25 1 -0.3634 -1.0277 0.0054 26 1 -0.3634 0.5185 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.7331 -0.1858 -2.1392 29 1 1.6350 -1.7387 -1.2733 30 1 5.2976 -0.8583 0.0568 31 1 3.5242 -2.7123 3.1024 32 1 4.7900 -2.7347 5.2099 33 1 6.2593 -0.8486 5.7891 34 1 7.5606 1.0283 4.9793 35 1 7.1326 1.8467 3.4576 36 1 8.2829 4.5771 5.6453 37 1 5.2328 1.1101 2.1447 38 1 1.7184 -0.1930 2.1383 39 1 1.6427 -1.7417 1.2644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242739985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -26.468291 kcal Electronic energy + Delta-G solvation = -19579.051810 eV Core-core repulsion = 16643.479158 eV Total energy + Delta-G solvation = -2935.572652 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.24251 -38.73850 -36.95967 -33.97686 -33.07717 -31.27122 -30.10038 -28.68769 -27.17846 -26.91233 -23.54594 -23.21738 -21.49272 -20.98717 -19.79668 -17.85298 -16.52514 -16.26450 -15.78061 -15.57808 -15.25901 -14.68547 -14.60513 -14.42544 -14.07541 -13.45611 -13.01995 -12.80920 -12.65328 -12.51149 -12.46708 -12.22279 -11.91101 -11.55849 -11.38770 -11.13700 -11.01759 -11.00606 -10.78707 -10.59216 -10.40356 -9.77636 -9.55729 -9.50313 -9.20637 -8.47607 -8.27621 -7.93133 -6.09536 -4.14050 0.75078 1.79619 1.98153 2.96559 3.28035 3.32807 3.35191 4.17290 4.22116 4.36618 4.42815 4.58807 4.66303 4.86416 5.17917 5.19131 5.24903 5.31251 5.33663 5.36249 5.41712 5.46567 5.49482 5.75868 5.81922 5.85611 5.91484 6.02796 6.04957 6.12242 6.20152 6.38762 6.47980 6.61433 6.87172 7.02168 7.06487 7.41558 7.56988 7.60346 7.74263 7.85549 8.24475 8.90670 9.50104 11.00379 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.004412 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.242455 B = 6344.279366 C = 6708.833160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.082 0.918 4 C -0.164 4.164 5 C 0.392 3.608 6 O -0.475 6.475 7 C -0.253 4.253 8 C 0.046 3.954 9 C -0.090 4.090 10 C -0.127 4.127 11 C -0.123 4.123 12 C -0.113 4.113 13 C -0.033 4.033 14 C 0.047 3.953 15 C -0.515 4.515 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.098 4.098 24 C -0.096 4.096 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.205 -10.603 -7.312 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.100 0.900 4 C -0.202 4.202 5 C 0.274 3.726 6 O -0.354 6.354 7 C -0.272 4.272 8 C 0.045 3.955 9 C -0.090 4.090 10 C -0.145 4.145 11 C -0.141 4.141 12 C -0.131 4.131 13 C -0.033 4.033 14 C 0.010 3.990 15 C -0.553 4.553 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.116 4.116 24 C -0.132 4.132 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.729 -10.489 -7.818 18.253 hybrid contribution -0.398 0.772 0.749 1.147 sum -13.127 -9.717 -7.070 17.796 Atomic orbital electron populations 1.21811 0.94002 1.02162 1.02363 1.21219 0.96409 1.00164 0.92843 0.89976 1.22217 0.94853 1.03072 1.00051 1.20921 0.91184 0.71661 0.88814 1.90576 1.69900 1.37756 1.37187 1.22182 1.01848 1.10349 0.92833 1.21360 0.94894 0.86732 0.92560 1.18874 0.99471 0.96603 0.94037 1.20899 1.01343 0.97727 0.94569 1.20961 0.97808 0.98657 0.96684 1.21271 0.98848 0.93418 0.99602 1.20650 0.95332 0.95465 0.91820 1.18382 0.93417 0.89743 0.97465 1.20991 0.96323 1.03033 1.34945 0.92518 1.25009 0.94939 0.98131 0.96138 1.69945 1.09901 1.27175 1.46118 0.86594 0.79821 0.80848 0.80415 1.20129 1.21167 1.20157 1.21226 0.95807 0.97026 0.97544 1.20930 0.90808 1.02072 0.99431 0.92375 0.91970 0.92234 0.88933 0.88350 0.84957 0.86888 0.86642 0.86189 0.95146 0.95218 0.92696 0.86091 0.89134 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.21 37.15 0.34 -0.67 16 2 C -0.09 -0.78 2.78 -90.46 -0.25 -1.03 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.16 -1.58 5.37 -27.78 -0.15 -1.72 16 5 C 0.39 5.29 6.81 -33.38 -0.23 5.06 16 6 O -0.48 -8.06 17.82 5.42 0.10 -7.97 16 7 C -0.25 -3.51 9.26 -39.85 -0.37 -3.88 16 8 C 0.05 0.59 5.29 -102.33 -0.54 0.05 16 9 C -0.09 -1.39 5.24 -105.06 -0.55 -1.94 16 10 C -0.13 -1.83 9.77 -39.09 -0.38 -2.21 16 11 C -0.12 -1.87 10.03 -39.65 -0.40 -2.27 16 12 C -0.11 -2.08 9.69 -39.45 -0.38 -2.46 16 13 C -0.03 -0.68 5.06 -104.69 -0.53 -1.21 16 14 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 15 C -0.51 -14.07 9.09 -34.44 -0.31 -14.38 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C -0.10 -1.83 9.37 -39.08 -0.37 -2.20 16 24 C -0.10 -0.94 5.14 -27.90 -0.14 -1.08 16 25 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.13 1.99 8.04 -52.49 -0.42 1.57 16 31 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 33 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 332.22 15.07 5.01 5.01 Total: -1.00 -30.55 332.22 -9.56 -40.11 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.87 Total: -0.64 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: -4.51 Total: -27.36 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.28 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.10 Total: -7.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.55 -9.56 -40.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.645 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds