Wall clock time and date at job start Mon Mar 30 2020 02:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.66865 * 2 1 4 4 C 1.53194 * 109.57197 * 239.69079 * 2 1 3 5 5 C 1.50706 * 109.06272 * 183.34940 * 4 2 1 6 6 O 1.21435 * 119.75823 * 208.49883 * 5 4 2 7 7 C 1.40693 * 120.49775 * 28.77864 * 5 4 2 8 8 C 1.34878 * 121.59537 * 0.23365 * 7 5 4 9 9 C 1.47036 * 119.40670 * 180.25814 * 8 7 5 10 10 C 1.39952 * 120.17893 * 244.72068 * 9 8 7 11 11 C 1.37836 * 119.81892 * 179.79396 * 10 9 8 12 12 C 1.38451 * 120.17697 * 0.48425 * 11 10 9 13 13 C 1.38392 * 120.36433 * 359.74950 * 12 11 10 14 14 C 1.50705 * 119.91107 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46795 * 270.02206 * 14 13 12 16 16 H 1.07998 * 120.00973 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99545 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99959 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47173 * 59.99989 * 19 17 15 21 21 H 1.48499 * 109.46959 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47035 * 299.99831 * 19 17 15 23 23 C 1.37891 * 120.18108 * 0.02562 * 13 12 11 24 24 C 1.50530 * 121.18547 * 0.26013 * 8 7 5 25 25 H 1.09007 * 109.47325 * 180.30092 * 1 2 3 26 26 H 1.08994 * 109.47350 * 300.30497 * 1 2 3 27 27 H 1.09000 * 109.47183 * 60.30493 * 1 2 3 28 28 H 1.09004 * 109.53691 * 63.48112 * 4 2 1 29 29 H 1.08996 * 109.60953 * 303.26934 * 4 2 1 30 30 H 1.07995 * 119.20531 * 180.23840 * 7 5 4 31 31 H 1.08003 * 120.08805 * 0.02562 * 10 9 8 32 32 H 1.08003 * 119.91270 * 180.26225 * 11 10 9 33 33 H 1.08001 * 119.81523 * 179.76445 * 12 11 10 34 34 H 1.09002 * 109.47052 * 30.02020 * 14 13 12 35 35 H 1.08997 * 109.47346 * 150.02325 * 14 13 12 36 36 H 0.97003 * 119.99691 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.08854 * 179.97438 * 23 13 12 38 38 H 1.08998 * 109.46818 * 210.18593 * 24 8 7 39 39 H 1.09000 * 109.46678 * 90.19701 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0431 -0.7284 -1.2461 5 6 3.5478 -0.7939 -1.1933 6 8 4.1860 -0.8338 -2.2256 7 6 4.2186 -0.8151 0.0433 8 6 3.5467 -0.7827 1.2123 9 6 4.2967 -0.8011 2.4769 10 6 4.1720 -1.8853 3.3531 11 6 4.8818 -1.8969 4.5346 12 6 5.7087 -0.8352 4.8601 13 6 5.8339 0.2429 4.0014 14 6 6.7365 1.3933 4.3662 15 6 5.9519 2.4214 5.1398 16 1 4.9047 2.2581 5.3471 17 6 6.5715 3.5704 5.5841 18 7 7.8472 3.7687 5.3331 19 14 5.5993 4.8445 6.5436 20 1 5.0596 4.2264 7.7813 21 1 6.4886 5.9781 6.9030 22 1 4.4765 5.3422 5.7088 23 6 5.1343 0.2678 2.8135 24 6 2.0428 -0.7280 1.2457 25 1 -0.3634 -1.0277 0.0054 26 1 -0.3634 0.5185 0.8872 27 1 -0.3633 0.5091 -0.8927 28 1 1.7331 -0.1858 -2.1392 29 1 1.6350 -1.7387 -1.2733 30 1 5.2976 -0.8583 0.0568 31 1 3.5242 -2.7123 3.1024 32 1 4.7900 -2.7347 5.2099 33 1 6.2593 -0.8486 5.7891 34 1 7.5606 1.0283 4.9793 35 1 7.1326 1.8467 3.4576 36 1 8.2829 4.5771 5.6453 37 1 5.2328 1.1101 2.1447 38 1 1.7184 -0.1930 2.1383 39 1 1.6427 -1.7417 1.2644 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242739985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:14 Heat of formation + Delta-G solvation = -41.504359 kcal Electronic energy + Delta-G solvation = -19579.703822 eV Core-core repulsion = 16643.479158 eV Total energy + Delta-G solvation = -2936.224665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29188 -40.07175 -37.98416 -35.61258 -34.45278 -32.94467 -31.24974 -29.75521 -28.85520 -27.72095 -25.30361 -24.54453 -22.70763 -21.91333 -21.12081 -18.81751 -18.53601 -17.63488 -16.95480 -16.65279 -16.54924 -16.22848 -15.95828 -15.48013 -15.25929 -14.55535 -14.35169 -14.15852 -14.09168 -13.65153 -13.40521 -13.33571 -13.09679 -12.91241 -12.86408 -12.61329 -12.44144 -12.28983 -12.11321 -11.70265 -11.62174 -11.56552 -11.42396 -10.64536 -10.60593 -10.34443 -9.64512 -9.38652 -8.23007 -6.36961 -0.35515 0.47941 0.60361 1.38521 1.41246 1.49612 1.91176 2.37594 2.89429 3.08098 3.24251 3.46478 3.70410 3.86984 3.95825 4.08479 4.17241 4.33983 4.35287 4.43622 4.57407 4.63529 4.68827 4.71842 4.79028 4.82271 4.96470 5.11351 5.13398 5.18226 5.20097 5.30438 5.31798 5.33353 5.40961 5.48552 5.56158 5.61268 5.71934 6.01871 6.07018 6.19801 6.56617 6.75599 7.32052 8.86563 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.004412 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.242455 B = 6344.279366 C = 6708.833160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.084 4.084 3 H 0.064 0.936 4 C -0.154 4.154 5 C 0.393 3.607 6 O -0.522 6.522 7 C -0.273 4.273 8 C 0.062 3.938 9 C -0.085 4.085 10 C -0.111 4.111 11 C -0.110 4.110 12 C -0.128 4.128 13 C -0.065 4.065 14 C 0.055 3.945 15 C -0.530 4.530 16 H 0.057 0.943 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.117 4.117 24 C -0.094 4.094 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.160 0.840 32 H 0.156 0.844 33 H 0.116 0.884 34 H 0.004 0.996 35 H -0.003 1.003 36 H 0.266 0.734 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.154 -12.478 -6.746 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.192 4.192 5 C 0.278 3.722 6 O -0.405 6.405 7 C -0.292 4.292 8 C 0.061 3.939 9 C -0.085 4.085 10 C -0.128 4.128 11 C -0.128 4.128 12 C -0.146 4.146 13 C -0.065 4.065 14 C 0.018 3.982 15 C -0.567 4.567 16 H 0.075 0.925 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.790 3.210 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.135 4.135 24 C -0.130 4.130 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.124 0.876 31 H 0.177 0.823 32 H 0.174 0.826 33 H 0.134 0.866 34 H 0.023 0.977 35 H 0.015 0.985 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.693 -12.372 -7.241 22.003 hybrid contribution 0.866 1.275 0.570 1.643 sum -15.827 -11.097 -6.671 20.448 Atomic orbital electron populations 1.21779 0.91727 1.03525 1.02793 1.21199 0.98095 0.98985 0.91966 0.91705 1.22216 0.91184 1.04961 1.00793 1.21439 0.93258 0.69853 0.87636 1.90562 1.71243 1.40332 1.38321 1.22119 1.00920 1.12134 0.94024 1.21522 0.96774 0.84916 0.90660 1.19093 0.98341 0.95831 0.95262 1.21426 1.00402 0.97777 0.93205 1.21348 0.95786 0.98198 0.97452 1.21326 1.00133 0.93930 0.99212 1.20289 0.96739 0.95490 0.93997 1.18114 0.93549 0.91307 0.95252 1.21335 0.96485 1.03870 1.35046 0.92462 1.25966 0.95929 1.00416 0.97129 1.70084 1.11710 1.27964 1.47368 0.85478 0.78391 0.77945 0.79148 1.18895 1.20663 1.19250 1.21092 0.97338 0.98193 0.96873 1.21086 0.87726 1.04239 0.99969 0.90518 0.91779 0.91699 0.88187 0.85432 0.87590 0.82260 0.82615 0.86623 0.97720 0.98501 0.92549 0.88058 0.88765 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.21 71.98 0.66 -0.68 16 2 C -0.08 -1.23 2.78 -10.69 -0.03 -1.26 16 3 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.15 -2.52 5.37 29.91 0.16 -2.36 16 5 C 0.39 10.40 6.81 26.29 0.18 10.58 16 6 O -0.52 -18.14 17.82 -3.51 -0.06 -18.20 16 7 C -0.27 -7.57 9.26 22.10 0.20 -7.37 16 8 C 0.06 1.49 5.29 -18.38 -0.10 1.40 16 9 C -0.09 -2.52 5.24 -20.15 -0.11 -2.63 16 10 C -0.11 -2.73 9.77 22.59 0.22 -2.50 16 11 C -0.11 -3.00 10.03 22.23 0.22 -2.77 16 12 C -0.13 -4.70 9.69 22.36 0.22 -4.48 16 13 C -0.07 -2.85 5.06 -19.91 -0.10 -2.95 16 14 C 0.05 2.96 5.10 29.10 0.15 3.11 16 15 C -0.53 -30.22 9.09 25.60 0.23 -29.98 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 19 Si 0.97 43.96 29.54 68.60 2.03 45.98 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 C -0.12 -4.56 9.37 22.59 0.21 -4.35 16 24 C -0.09 -1.47 5.14 29.84 0.15 -1.31 16 25 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 3.43 8.04 -2.91 -0.02 3.41 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 32 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 34 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 35 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 38 H 0.09 1.50 8.10 -2.39 -0.02 1.48 16 39 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -71.67 332.22 6.01 -65.66 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 1.02 Total: 9.73 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 2.74 Total: -46.86 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.31 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.06 Total: -18.20 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.67 6.01 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242739985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.157 kcal (2) G-P(sol) polarization free energy of solvation -71.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds