Wall clock time and date at job start Mon Mar 30 2020 00:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36048 * 120.03664 * 2 1 4 4 C 1.40524 * 120.07022 * 180.28951 * 3 2 1 5 5 C 1.46453 * 119.93352 * 179.71399 * 4 3 2 6 6 C 1.35357 * 119.44089 * 294.73227 * 5 4 3 7 7 C 1.40571 * 121.55566 * 179.76340 * 6 5 4 8 8 O 1.21469 * 119.74574 * 179.51642 * 7 6 5 9 9 C 1.50695 * 120.50961 * 359.79116 * 7 6 5 10 10 C 1.53190 * 109.08081 * 331.13512 * 9 7 6 11 11 H 1.08998 * 109.56441 * 297.13357 * 10 9 7 12 12 C 1.53002 * 109.56678 * 176.78482 * 10 9 7 13 13 C 1.50536 * 119.43996 * 114.70415 * 5 4 3 14 14 C 1.40566 * 120.13563 * 359.44391 * 4 3 2 15 15 C 1.36011 * 120.06501 * 0.27292 * 14 4 3 16 16 C 1.41091 * 120.03454 * 179.73435 * 2 1 3 17 17 C 1.40724 * 120.06903 * 359.95904 * 16 2 1 18 18 H 1.08001 * 119.99631 * 333.66388 * 17 16 2 19 19 C 1.40375 * 120.00051 * 153.66149 * 17 16 2 20 20 N 1.30570 * 119.99807 * 343.43318 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 163.44213 * 19 17 16 22 22 H 1.48500 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47451 * 119.99789 * 21 19 17 24 24 H 1.48499 * 109.46856 * 239.99861 * 21 19 17 25 25 H 1.08998 * 109.47718 * 270.26357 * 1 2 3 26 26 H 1.09004 * 109.47220 * 30.26640 * 1 2 3 27 27 H 1.09003 * 109.46799 * 150.26225 * 1 2 3 28 28 H 1.08007 * 119.96064 * 0.02872 * 3 2 1 29 29 H 1.07999 * 119.22264 * 359.73851 * 6 5 4 30 30 H 1.08999 * 109.53523 * 91.03006 * 9 7 6 31 31 H 1.09000 * 109.54090 * 211.26826 * 9 7 6 32 32 H 1.09001 * 109.47421 * 300.58924 * 12 10 9 33 33 H 1.09002 * 109.47065 * 60.58851 * 12 10 9 34 34 H 1.09000 * 109.47061 * 180.58592 * 12 10 9 35 35 H 1.09004 * 109.46682 * 329.78772 * 13 5 4 36 36 H 1.09008 * 109.46402 * 89.76607 * 13 5 4 37 37 H 1.07998 * 119.96710 * 180.24805 * 14 4 3 38 38 H 1.08008 * 120.03518 * 179.97438 * 15 14 4 39 39 H 0.97000 * 119.99661 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1778 0.0000 4 6 3.5932 1.1786 -0.0061 5 6 4.3232 2.4482 -0.0125 6 6 4.2227 3.2682 -1.0847 7 6 4.9000 4.4989 -1.1357 8 8 4.7934 5.2052 -2.1182 9 6 5.7623 4.9460 0.0164 10 6 5.2155 4.3434 1.3144 11 1 4.2098 4.7220 1.4972 12 6 6.1290 4.7248 2.4810 13 6 5.1722 2.8194 1.1739 14 6 4.2997 -0.0366 -0.0005 15 6 3.6245 -1.2173 0.0053 16 6 2.2132 -1.2214 0.0057 17 6 1.5118 -2.4414 0.0122 18 1 0.5162 -2.4896 0.4280 19 6 2.1061 -3.5956 -0.5218 20 7 3.1470 -3.4921 -1.3032 21 14 1.4076 -5.2796 -0.1146 22 1 0.2361 -5.1252 0.7849 23 1 0.9848 -5.9561 -1.3670 24 1 2.4469 -6.0960 0.5625 25 1 -0.3634 0.0047 1.0276 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5098 28 1 1.6479 2.1131 0.0005 29 1 3.6078 2.9696 -1.9209 30 1 6.7858 4.6057 -0.1408 31 1 5.7449 6.0337 0.0842 32 1 7.1349 4.3494 2.2926 33 1 6.1587 5.8099 2.5796 34 1 5.7443 4.2867 3.4020 35 1 4.7451 2.3833 2.0770 36 1 6.1836 2.4389 1.0301 37 1 5.3796 -0.0328 -0.0012 38 1 4.1678 -2.1507 0.0092 39 1 3.5575 -4.2896 -1.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242746290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:18 Heat of formation + Delta-G solvation = -33.801909 kcal Electronic energy + Delta-G solvation = -19848.030044 eV Core-core repulsion = 16912.139382 eV Total energy + Delta-G solvation = -2935.890661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.77352 -38.01806 -36.60529 -34.18682 -32.81572 -31.25944 -29.60234 -28.57504 -26.76762 -26.24759 -25.00438 -22.24564 -21.08479 -20.44477 -19.33403 -17.59014 -17.28232 -15.85900 -15.50571 -15.15857 -14.90593 -14.21879 -14.11766 -13.93829 -13.60235 -13.09678 -12.75824 -12.61113 -12.50358 -12.22055 -11.98943 -11.93817 -11.71556 -11.44819 -11.27840 -11.24425 -11.05639 -10.80618 -10.77200 -10.58452 -10.34182 -9.75222 -9.56568 -9.32709 -9.12642 -8.63825 -7.55172 -7.34612 -6.95999 -4.51292 1.26641 2.55950 2.95984 2.97997 3.00536 3.03043 3.42481 3.77391 4.39073 4.55806 4.70073 4.85995 5.02189 5.39315 5.46258 5.50125 5.54237 5.61469 5.64417 5.77556 5.80783 6.03505 6.06480 6.12120 6.14436 6.27426 6.32929 6.53818 6.59007 6.63184 6.69346 6.85381 6.94397 6.97332 7.13211 7.23791 7.51092 7.75060 7.88443 7.92191 8.01293 8.11967 8.44032 8.68509 8.80651 9.95311 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029142 B = 0.004194 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.577626 B = 6673.956028 C = 6820.788905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.203 4.203 3 C -0.053 4.053 4 C -0.236 4.236 5 C 0.092 3.908 6 C -0.294 4.294 7 C 0.393 3.607 8 O -0.494 6.494 9 C -0.164 4.164 10 C -0.086 4.086 11 H 0.077 0.923 12 C -0.146 4.146 13 C -0.099 4.099 14 C -0.073 4.073 15 C -0.170 4.170 16 C 0.125 3.875 17 C -0.447 4.447 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.777 5.777 21 Si 0.909 3.091 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.270 1.270 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 6.380 6.249 9.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.204 4.204 3 C -0.072 4.072 4 C -0.238 4.238 5 C 0.091 3.909 6 C -0.313 4.313 7 C 0.278 3.722 8 O -0.375 6.375 9 C -0.201 4.201 10 C -0.105 4.105 11 H 0.095 0.905 12 C -0.203 4.203 13 C -0.136 4.136 14 C -0.091 4.091 15 C -0.189 4.189 16 C 0.122 3.878 17 C -0.475 4.475 18 H 0.103 0.897 19 C -0.145 4.145 20 N -0.401 5.401 21 Si 0.733 3.267 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.195 1.195 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.720 6.587 5.602 9.413 hybrid contribution -0.187 -0.948 0.028 0.967 sum 3.533 5.638 5.630 8.716 Atomic orbital electron populations 1.20410 0.93380 1.00727 0.99706 1.19412 0.94504 0.92960 1.13552 1.20212 0.92040 0.96139 0.98781 1.18106 0.92764 0.90693 1.22204 1.21336 0.87002 0.91483 0.91056 1.22115 1.09653 0.98070 1.01438 1.20875 0.78890 0.85849 0.86635 1.90538 1.57992 1.55433 1.33569 1.22195 1.00841 1.02233 0.94870 1.21201 1.00207 0.94928 0.94127 0.90472 1.21818 0.99472 1.01277 0.97713 1.20990 1.00088 0.94947 0.97580 1.20400 0.96983 0.92014 0.99736 1.20933 0.94457 0.96552 1.06943 1.17584 0.91847 0.91681 0.86706 1.19744 1.02157 0.92417 1.33176 0.89733 1.26075 0.94079 1.01793 0.92582 1.69716 1.17785 1.32150 1.20404 0.86238 0.80210 0.80800 0.79480 1.18134 1.19762 1.19503 0.93988 0.94261 0.91993 0.89208 0.85633 0.88702 0.89488 0.92439 0.92540 0.92173 0.89493 0.89578 0.89354 0.86445 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.38 36.01 0.34 -1.36 16 2 C -0.20 -4.65 5.90 -104.33 -0.62 -5.27 16 3 C -0.05 -1.15 9.28 -39.51 -0.37 -1.51 16 4 C -0.24 -4.89 5.26 -104.85 -0.55 -5.44 16 5 C 0.09 1.59 5.26 -102.42 -0.54 1.05 16 6 C -0.29 -5.27 9.28 -39.73 -0.37 -5.64 16 7 C 0.39 6.62 6.81 -33.43 -0.23 6.39 16 8 O -0.49 -9.89 17.82 5.39 0.10 -9.79 16 9 C -0.16 -2.05 5.37 -27.79 -0.15 -2.20 16 10 C -0.09 -0.99 2.77 -90.47 -0.25 -1.24 16 11 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.15 -1.30 9.21 37.16 0.34 -0.96 16 13 C -0.10 -1.34 5.13 -27.91 -0.14 -1.48 16 14 C -0.07 -1.59 9.69 -39.50 -0.38 -1.97 16 15 C -0.17 -4.12 8.61 -39.28 -0.34 -4.46 16 16 C 0.12 3.10 5.56 -106.78 -0.59 2.50 16 17 C -0.45 -10.95 8.09 -37.84 -0.31 -11.26 16 18 H 0.08 1.99 6.88 -52.49 -0.36 1.63 16 19 C 0.08 1.76 5.15 -17.28 -0.09 1.67 16 20 N -0.78 -18.84 10.98 55.57 0.61 -18.23 16 21 Si 0.91 17.36 29.59 -169.99 -5.03 12.33 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 1.25 6.77 -51.93 -0.35 0.90 16 28 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.13 2.48 8.04 -52.49 -0.42 2.06 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.94 6.23 -52.48 -0.33 2.62 16 39 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -26.92 324.11 -9.35 -36.26 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.66 Total: 5.71 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -4.24 Total: -31.16 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.61 Total: -18.23 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.10 Total: -9.79 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.92 -9.35 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242746290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.459 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds