Wall clock time and date at job start Mon Mar 30 2020 00:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36048 * 120.03664 * 2 1 4 4 C 1.40524 * 120.07022 * 180.28951 * 3 2 1 5 5 C 1.46453 * 119.93352 * 179.71399 * 4 3 2 6 6 C 1.35357 * 119.44089 * 294.73227 * 5 4 3 7 7 C 1.40571 * 121.55566 * 179.76340 * 6 5 4 8 8 O 1.21469 * 119.74574 * 179.51642 * 7 6 5 9 9 C 1.50695 * 120.50961 * 359.79116 * 7 6 5 10 10 C 1.53190 * 109.08081 * 331.13512 * 9 7 6 11 11 H 1.08998 * 109.56441 * 297.13357 * 10 9 7 12 12 C 1.53002 * 109.56678 * 176.78482 * 10 9 7 13 13 C 1.50536 * 119.43996 * 114.70415 * 5 4 3 14 14 C 1.40566 * 120.13563 * 359.44391 * 4 3 2 15 15 C 1.36011 * 120.06501 * 0.27292 * 14 4 3 16 16 C 1.41091 * 120.03454 * 179.73435 * 2 1 3 17 17 C 1.40724 * 120.06903 * 359.95904 * 16 2 1 18 18 H 1.08001 * 119.99631 * 333.66388 * 17 16 2 19 19 C 1.40375 * 120.00051 * 153.66149 * 17 16 2 20 20 N 1.30570 * 119.99807 * 343.43318 * 19 17 16 21 21 Si 1.86800 * 119.99934 * 163.44213 * 19 17 16 22 22 H 1.48500 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47451 * 119.99789 * 21 19 17 24 24 H 1.48499 * 109.46856 * 239.99861 * 21 19 17 25 25 H 1.08998 * 109.47718 * 270.26357 * 1 2 3 26 26 H 1.09004 * 109.47220 * 30.26640 * 1 2 3 27 27 H 1.09003 * 109.46799 * 150.26225 * 1 2 3 28 28 H 1.08007 * 119.96064 * 0.02872 * 3 2 1 29 29 H 1.07999 * 119.22264 * 359.73851 * 6 5 4 30 30 H 1.08999 * 109.53523 * 91.03006 * 9 7 6 31 31 H 1.09000 * 109.54090 * 211.26826 * 9 7 6 32 32 H 1.09001 * 109.47421 * 300.58924 * 12 10 9 33 33 H 1.09002 * 109.47065 * 60.58851 * 12 10 9 34 34 H 1.09000 * 109.47061 * 180.58592 * 12 10 9 35 35 H 1.09004 * 109.46682 * 329.78772 * 13 5 4 36 36 H 1.09008 * 109.46402 * 89.76607 * 13 5 4 37 37 H 1.07998 * 119.96710 * 180.24805 * 14 4 3 38 38 H 1.08008 * 120.03518 * 179.97438 * 15 14 4 39 39 H 0.97000 * 119.99661 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1778 0.0000 4 6 3.5932 1.1786 -0.0061 5 6 4.3232 2.4482 -0.0125 6 6 4.2227 3.2682 -1.0847 7 6 4.9000 4.4989 -1.1357 8 8 4.7934 5.2052 -2.1182 9 6 5.7623 4.9460 0.0164 10 6 5.2155 4.3434 1.3144 11 1 4.2098 4.7220 1.4972 12 6 6.1290 4.7248 2.4810 13 6 5.1722 2.8194 1.1739 14 6 4.2997 -0.0366 -0.0005 15 6 3.6245 -1.2173 0.0053 16 6 2.2132 -1.2214 0.0057 17 6 1.5118 -2.4414 0.0122 18 1 0.5162 -2.4896 0.4280 19 6 2.1061 -3.5956 -0.5218 20 7 3.1470 -3.4921 -1.3032 21 14 1.4076 -5.2796 -0.1146 22 1 0.2361 -5.1252 0.7849 23 1 0.9848 -5.9561 -1.3670 24 1 2.4469 -6.0960 0.5625 25 1 -0.3634 0.0047 1.0276 26 1 -0.3634 0.8876 -0.5180 27 1 -0.3633 -0.8924 -0.5098 28 1 1.6479 2.1131 0.0005 29 1 3.6078 2.9696 -1.9209 30 1 6.7858 4.6057 -0.1408 31 1 5.7449 6.0337 0.0842 32 1 7.1349 4.3494 2.2926 33 1 6.1587 5.8099 2.5796 34 1 5.7443 4.2867 3.4020 35 1 4.7451 2.3833 2.0770 36 1 6.1836 2.4389 1.0301 37 1 5.3796 -0.0328 -0.0012 38 1 4.1678 -2.1507 0.0092 39 1 3.5575 -4.2896 -1.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242746290.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:18 Heat of formation + Delta-G solvation = -45.003916 kcal Electronic energy + Delta-G solvation = -19848.515799 eV Core-core repulsion = 16912.139382 eV Total energy + Delta-G solvation = -2936.376417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09782 -39.70744 -37.90755 -35.79886 -34.28313 -32.88605 -31.18859 -29.86534 -28.08303 -27.58632 -26.64410 -23.80743 -22.45210 -21.77900 -20.91957 -19.20229 -18.67929 -17.37866 -17.07087 -16.46109 -16.10518 -15.83735 -15.62561 -15.34615 -15.11147 -14.40642 -14.26380 -14.12988 -13.68274 -13.52790 -13.33640 -13.13478 -13.04297 -12.87733 -12.84809 -12.76122 -12.49264 -12.29792 -12.00888 -11.67597 -11.65114 -11.39074 -11.26124 -11.06027 -10.49594 -10.10369 -9.32509 -9.11396 -8.69211 -6.34158 -0.14458 0.87952 1.16900 1.38855 1.47707 1.53476 2.04899 2.17879 2.65830 3.39181 3.60097 3.69249 3.88683 3.93706 4.16642 4.39098 4.43082 4.46965 4.51092 4.68938 4.69606 4.71729 4.83570 4.90031 4.95083 5.00750 5.10805 5.14462 5.17412 5.26483 5.29552 5.32913 5.35998 5.45217 5.49743 5.63896 5.75285 6.00692 6.10479 6.12727 6.34012 6.64108 6.68058 6.88442 7.01116 8.25054 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029142 B = 0.004194 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.577626 B = 6673.956028 C = 6820.788905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.218 4.218 3 C -0.066 4.066 4 C -0.229 4.229 5 C 0.100 3.900 6 C -0.304 4.304 7 C 0.394 3.606 8 O -0.533 6.533 9 C -0.154 4.154 10 C -0.078 4.078 11 H 0.072 0.928 12 C -0.140 4.140 13 C -0.097 4.097 14 C -0.078 4.078 15 C -0.193 4.193 16 C 0.093 3.907 17 C -0.479 4.479 18 H 0.085 0.915 19 C 0.037 3.963 20 N -0.814 5.814 21 Si 0.980 3.020 22 H -0.255 1.255 23 H -0.268 1.268 24 H -0.264 1.264 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 7.484 7.861 11.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.220 4.220 3 C -0.084 4.084 4 C -0.230 4.230 5 C 0.099 3.901 6 C -0.324 4.324 7 C 0.281 3.719 8 O -0.417 6.417 9 C -0.191 4.191 10 C -0.097 4.097 11 H 0.091 0.909 12 C -0.198 4.198 13 C -0.133 4.133 14 C -0.096 4.096 15 C -0.212 4.212 16 C 0.090 3.910 17 C -0.507 4.507 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.438 5.438 21 Si 0.801 3.199 22 H -0.178 1.178 23 H -0.193 1.193 24 H -0.188 1.188 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.637 7.702 7.228 11.535 hybrid contribution -0.448 -1.163 -0.514 1.348 sum 4.188 6.539 6.714 10.265 Atomic orbital electron populations 1.20391 0.91553 1.01065 1.00738 1.19827 0.96216 0.92863 1.13049 1.20489 0.92737 0.96445 0.98762 1.18469 0.92946 0.91918 1.19667 1.21462 0.86766 0.89479 0.92375 1.22079 1.10027 0.99255 1.00991 1.21346 0.78480 0.84680 0.87382 1.90529 1.59440 1.56254 1.35443 1.22192 1.00676 1.03337 0.92910 1.21172 1.00846 0.92982 0.94689 0.90905 1.21783 0.99249 1.02303 0.96419 1.21087 1.00040 0.96761 0.95450 1.20623 0.98118 0.91716 0.99173 1.20933 0.94682 0.96857 1.08733 1.17942 0.92440 0.92788 0.87820 1.19940 1.02614 0.93385 1.34745 0.89735 1.26869 0.94222 1.05101 0.91834 1.69766 1.19189 1.33436 1.21445 0.85179 0.79501 0.76003 0.79249 1.17812 1.19256 1.18850 0.92523 0.92488 0.92982 0.87550 0.88538 0.86458 0.87790 0.91297 0.91197 0.91598 0.89048 0.87530 0.87270 0.88030 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.20 9.38 71.24 0.67 -2.53 16 2 C -0.22 -10.15 5.90 -19.67 -0.12 -10.27 16 3 C -0.07 -2.84 9.28 22.32 0.21 -2.63 16 4 C -0.23 -9.37 5.26 -20.01 -0.11 -9.47 16 5 C 0.10 3.31 5.26 -18.44 -0.10 3.21 16 6 C -0.30 -10.76 9.28 22.17 0.21 -10.56 16 7 C 0.39 12.73 6.81 26.25 0.18 12.91 16 8 O -0.53 -21.10 17.82 -3.62 -0.06 -21.16 16 9 C -0.15 -3.30 5.37 29.91 0.16 -3.14 16 10 C -0.08 -1.50 2.77 -10.69 -0.03 -1.53 16 11 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 12 C -0.14 -1.85 9.21 71.98 0.66 -1.19 16 13 C -0.10 -2.29 5.13 29.83 0.15 -2.14 16 14 C -0.08 -3.42 9.69 22.32 0.22 -3.21 16 15 C -0.19 -9.67 8.61 22.46 0.19 -9.48 16 16 C 0.09 4.76 5.56 -21.26 -0.12 4.64 16 17 C -0.48 -24.23 8.09 23.40 0.19 -24.04 16 18 H 0.08 4.10 6.88 -2.91 -0.02 4.08 16 19 C 0.04 1.76 5.15 85.40 0.44 2.20 16 20 N -0.81 -40.78 10.98 21.90 0.24 -40.54 16 21 Si 0.98 36.08 29.59 68.60 2.03 38.11 16 22 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 27 H 0.05 2.14 6.77 -2.39 -0.02 2.12 16 28 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.10 3.93 8.04 -2.91 -0.02 3.90 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 2.15 8.10 -2.39 -0.02 2.13 16 36 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.10 5.33 6.23 -2.91 -0.02 5.31 16 39 H 0.29 13.11 8.29 -92.71 -0.77 12.35 16 Total: -1.00 -60.61 324.11 6.05 -54.56 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 1.03 Total: 26.26 kcal Atomic # 6 Polarization: -60.05 SS G_CDS: 2.81 Total: -57.24 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.24 Total: -40.54 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -60.61 6.05 -54.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242746290.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.561 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds