Wall clock time and date at job start Mon Mar 30 2020 02:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47650 * 2 1 4 4 O 1.42895 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.35884 * 116.99865 * 179.97438 * 4 3 2 6 6 C 1.39848 * 119.56745 * 0.02562 * 5 4 3 7 7 C 1.35984 * 120.93178 * 179.97438 * 6 5 4 8 8 C 1.40593 * 119.72837 * 0.02562 * 7 6 5 9 9 C 1.40526 * 121.21524 * 179.69423 * 8 7 6 10 10 C 1.36101 * 119.67443 * 179.74678 * 9 8 7 11 11 C 1.50698 * 119.50954 * 180.25189 * 10 9 8 12 12 C 1.50692 * 109.47236 * 270.26347 * 11 10 9 13 13 H 1.08002 * 120.00457 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99974 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99923 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47558 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46861 * 120.00382 * 16 14 12 19 19 H 1.48503 * 109.46958 * 239.99998 * 16 14 12 20 20 C 1.39375 * 120.99094 * 0.51776 * 10 9 8 21 21 C 1.36094 * 120.98318 * 359.75664 * 20 10 9 22 22 C 1.40579 * 119.65612 * 359.97438 * 21 20 10 23 23 C 1.36580 * 119.56590 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46859 * 300.00057 * 1 2 3 25 25 H 1.09002 * 109.46890 * 59.99547 * 1 2 3 26 26 H 1.08999 * 109.47553 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47007 * 239.99660 * 2 1 3 28 28 H 1.09002 * 109.46890 * 120.00453 * 2 1 3 29 29 H 1.09004 * 109.46586 * 59.99764 * 3 2 1 30 30 H 1.09002 * 109.46891 * 300.00457 * 3 2 1 31 31 H 1.07998 * 119.53484 * 0.02562 * 6 5 4 32 32 H 1.08001 * 120.13574 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.16073 * 0.27402 * 9 8 7 34 34 H 1.09006 * 109.46486 * 30.26271 * 11 10 9 35 35 H 1.09003 * 109.47368 * 150.25344 * 11 10 9 36 36 H 0.97003 * 119.99779 * 179.97438 * 15 14 12 37 37 H 1.07998 * 119.51127 * 179.74023 * 20 10 9 38 38 H 1.07992 * 120.17197 * 180.02562 * 21 20 10 39 39 H 1.07992 * 120.18717 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0860 2.6531 0.0001 6 6 3.3155 3.8202 -0.0003 7 6 3.9039 5.0461 -0.0003 8 6 5.3063 5.1464 -0.0003 9 6 5.9469 6.3971 -0.0066 10 6 7.3066 6.4577 -0.0012 11 6 7.9898 7.8010 -0.0023 12 6 8.2175 8.2476 -1.4234 13 1 7.8998 7.6212 -2.2439 14 6 8.8316 9.4559 -1.6763 15 7 9.2181 10.2189 -0.6773 16 14 9.1145 10.0091 -3.4379 17 1 8.5926 8.9782 -4.3705 18 1 8.4073 11.2936 -3.6730 19 1 10.5694 10.1953 -3.6707 20 6 8.0767 5.2961 -0.0002 21 6 7.4914 4.0675 0.0003 22 6 6.0893 3.9649 0.0004 23 6 5.4504 2.7142 0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.2381 3.7468 0.0001 32 1 3.2964 5.9391 -0.0002 33 1 5.3632 7.3059 -0.0072 34 1 7.3611 8.5287 0.5109 35 1 8.9477 7.7219 0.5118 36 1 9.6505 11.0688 -0.8553 37 1 9.1540 5.3720 -0.0002 38 1 8.1008 3.1759 0.0015 39 1 6.0347 1.8059 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:47 Heat of formation + Delta-G solvation = -21.210468 kcal Electronic energy + Delta-G solvation = -19124.388785 eV Core-core repulsion = 16189.044130 eV Total energy + Delta-G solvation = -2935.344656 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.33829 -38.78442 -35.84340 -34.08707 -33.16534 -32.14896 -30.14034 -29.22143 -27.20410 -26.10937 -23.55878 -23.06957 -21.75769 -21.37936 -20.81287 -18.09415 -16.61646 -16.41418 -16.36218 -16.05321 -15.20547 -14.57071 -14.35219 -14.32158 -14.16423 -13.24255 -13.06624 -13.01040 -12.71275 -12.60441 -12.37719 -12.21135 -11.80783 -11.72914 -11.29125 -11.24743 -11.03944 -10.96260 -10.62766 -10.53038 -10.26163 -10.23914 -9.63703 -9.50002 -9.01978 -8.44753 -7.91907 -7.13841 -6.05953 -4.10191 0.96359 1.50994 2.53988 3.18112 3.28265 3.35637 3.39877 3.46597 4.40749 4.57834 4.59321 4.65902 4.88431 4.91081 5.00640 5.11683 5.12489 5.27891 5.29868 5.37178 5.50773 5.60233 5.63278 5.68995 5.73728 5.78314 5.90693 6.01381 6.09271 6.30719 6.47933 6.51935 6.65527 6.73450 7.06639 7.11934 7.15841 7.45648 7.52641 7.65857 7.81400 7.89789 8.29510 8.95495 9.53899 11.03479 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.003213 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.476587 B = 8712.138083 C = 8948.975152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.321 6.321 5 C 0.110 3.890 6 C -0.200 4.200 7 C -0.066 4.066 8 C -0.073 4.073 9 C -0.114 4.114 10 C -0.041 4.041 11 C 0.046 3.954 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.087 4.087 21 C -0.131 4.131 22 C -0.030 4.030 23 C -0.147 4.147 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.013 -16.822 2.515 22.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.016 4.016 4 O -0.236 6.236 5 C 0.066 3.934 6 C -0.218 4.218 7 C -0.084 4.084 8 C -0.073 4.073 9 C -0.132 4.132 10 C -0.041 4.041 11 C 0.010 3.990 12 C -0.549 4.549 13 H 0.076 0.924 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.105 4.105 21 C -0.149 4.149 22 C -0.030 4.030 23 C -0.166 4.166 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.856 -16.847 2.553 21.962 hybrid contribution 0.010 0.608 -0.998 1.169 sum -13.846 -16.239 1.555 21.397 Atomic orbital electron populations 1.21693 0.94408 1.02391 1.02220 1.21478 0.95902 0.95132 1.03612 1.22793 0.79186 0.98391 1.01239 1.86022 1.20704 1.27427 1.89438 1.18483 0.92036 0.83673 0.99218 1.20872 0.99546 0.92539 1.08877 1.20885 0.93767 0.97019 0.96688 1.18118 0.92919 0.93542 1.02687 1.20863 0.94794 0.95547 1.01975 1.20397 0.93461 0.97575 0.92642 1.18400 0.95599 0.87246 0.97796 1.21103 1.38726 1.03649 0.91470 0.92393 1.25018 0.95528 0.96550 0.97265 1.69964 1.40607 1.12048 1.30661 0.86484 0.77901 0.78618 0.84762 1.19642 1.20929 1.20921 1.20973 1.00363 0.91840 0.97292 1.20859 0.92842 0.97810 1.03399 1.17681 0.93550 0.91569 1.00179 1.20068 0.91385 0.97367 1.07802 0.92387 0.92368 0.91838 0.90906 0.90917 0.92281 0.92258 0.86047 0.85521 0.85901 0.95239 0.95240 0.92874 0.86020 0.86244 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.94 6.30 -26.73 -0.17 -1.11 16 3 C 0.06 0.57 4.73 37.16 0.18 0.74 16 4 O -0.32 -4.26 10.11 -19.37 -0.20 -4.45 16 5 C 0.11 1.62 6.63 -39.58 -0.26 1.36 16 6 C -0.20 -2.75 8.93 -39.79 -0.36 -3.11 16 7 C -0.07 -0.99 9.76 -39.50 -0.39 -1.38 16 8 C -0.07 -1.30 5.74 -106.81 -0.61 -1.92 16 9 C -0.11 -2.26 9.37 -39.49 -0.37 -2.63 16 10 C -0.04 -0.88 5.03 -104.97 -0.53 -1.41 16 11 C 0.05 1.18 5.07 -29.04 -0.15 1.03 16 12 C -0.51 -14.22 9.09 -34.44 -0.31 -14.54 16 13 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.09 -1.68 9.58 -39.93 -0.38 -2.06 16 21 C -0.13 -2.25 9.77 -39.47 -0.39 -2.63 16 22 C -0.03 -0.52 5.74 -106.84 -0.61 -1.13 16 23 C -0.15 -2.30 9.68 -39.35 -0.38 -2.68 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.52 7.63 -51.93 -0.40 0.12 16 30 H 0.06 0.53 7.63 -51.93 -0.40 0.14 16 31 H 0.12 1.33 6.21 -52.49 -0.33 1.00 16 32 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -30.37 329.75 -9.70 -40.07 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.73 Total: -1.13 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -4.46 Total: -30.41 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.20 Total: -4.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.37 -9.70 -40.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.863 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds