Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47650 * 2 1 4 4 O 1.42895 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.35884 * 116.99865 * 179.97438 * 4 3 2 6 6 C 1.39848 * 119.56745 * 0.02562 * 5 4 3 7 7 C 1.35984 * 120.93178 * 179.97438 * 6 5 4 8 8 C 1.40593 * 119.72837 * 0.02562 * 7 6 5 9 9 C 1.40526 * 121.21524 * 179.69423 * 8 7 6 10 10 C 1.36101 * 119.67443 * 179.74678 * 9 8 7 11 11 C 1.50698 * 119.50954 * 180.25189 * 10 9 8 12 12 C 1.50692 * 109.47236 * 270.26347 * 11 10 9 13 13 H 1.08002 * 120.00457 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99974 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99923 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99711 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47558 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.46861 * 120.00382 * 16 14 12 19 19 H 1.48503 * 109.46958 * 239.99998 * 16 14 12 20 20 C 1.39375 * 120.99094 * 0.51776 * 10 9 8 21 21 C 1.36094 * 120.98318 * 359.75664 * 20 10 9 22 22 C 1.40579 * 119.65612 * 359.97438 * 21 20 10 23 23 C 1.36580 * 119.56590 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.46859 * 300.00057 * 1 2 3 25 25 H 1.09002 * 109.46890 * 59.99547 * 1 2 3 26 26 H 1.08999 * 109.47553 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47007 * 239.99660 * 2 1 3 28 28 H 1.09002 * 109.46890 * 120.00453 * 2 1 3 29 29 H 1.09004 * 109.46586 * 59.99764 * 3 2 1 30 30 H 1.09002 * 109.46891 * 300.00457 * 3 2 1 31 31 H 1.07998 * 119.53484 * 0.02562 * 6 5 4 32 32 H 1.08001 * 120.13574 * 180.02562 * 7 6 5 33 33 H 1.08004 * 120.16073 * 0.27402 * 9 8 7 34 34 H 1.09006 * 109.46486 * 30.26271 * 11 10 9 35 35 H 1.09003 * 109.47368 * 150.25344 * 11 10 9 36 36 H 0.97003 * 119.99779 * 179.97438 * 15 14 12 37 37 H 1.07998 * 119.51127 * 179.74023 * 20 10 9 38 38 H 1.07992 * 120.17197 * 180.02562 * 21 20 10 39 39 H 1.07992 * 120.18717 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0860 2.6531 0.0001 6 6 3.3155 3.8202 -0.0003 7 6 3.9039 5.0461 -0.0003 8 6 5.3063 5.1464 -0.0003 9 6 5.9469 6.3971 -0.0066 10 6 7.3066 6.4577 -0.0012 11 6 7.9898 7.8010 -0.0023 12 6 8.2175 8.2476 -1.4234 13 1 7.8998 7.6212 -2.2439 14 6 8.8316 9.4559 -1.6763 15 7 9.2181 10.2189 -0.6773 16 14 9.1145 10.0091 -3.4379 17 1 8.5926 8.9782 -4.3705 18 1 8.4073 11.2936 -3.6730 19 1 10.5694 10.1953 -3.6707 20 6 8.0767 5.2961 -0.0002 21 6 7.4914 4.0675 0.0003 22 6 6.0893 3.9649 0.0004 23 6 5.4504 2.7142 0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.2381 3.7468 0.0001 32 1 3.2964 5.9391 -0.0002 33 1 5.3632 7.3059 -0.0072 34 1 7.3611 8.5287 0.5109 35 1 8.9477 7.7219 0.5118 36 1 9.6505 11.0688 -0.8553 37 1 9.1540 5.3720 -0.0002 38 1 8.1008 3.1759 0.0015 39 1 6.0347 1.8059 0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057537.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -35.671671 kcal Electronic energy + Delta-G solvation = -19125.015870 eV Core-core repulsion = 16189.044130 eV Total energy + Delta-G solvation = -2935.971740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54914 -39.96688 -37.16364 -35.17027 -34.69293 -33.63314 -31.68651 -30.53672 -28.63759 -27.17046 -25.26440 -24.32982 -22.95646 -22.47139 -22.08764 -19.21726 -18.52923 -17.86862 -17.37691 -17.20167 -16.56683 -16.34637 -15.54025 -15.38809 -15.13470 -14.59068 -14.48280 -14.16094 -14.06865 -13.90620 -13.71505 -13.26810 -13.12236 -12.85789 -12.73176 -12.62206 -12.42162 -12.35033 -11.94185 -11.85359 -11.53880 -11.53034 -11.40041 -11.28281 -10.61812 -10.49276 -9.25897 -8.53352 -8.17379 -6.34085 -0.32557 0.16877 1.18877 1.38867 1.39413 1.53037 2.10752 2.24910 2.41195 3.09724 3.24697 3.68726 3.90376 3.97445 3.98211 4.07062 4.15126 4.27786 4.36118 4.40392 4.42130 4.56125 4.58006 4.58729 4.81991 4.85749 4.99131 5.10533 5.14228 5.20581 5.20769 5.29069 5.31879 5.37180 5.39426 5.45331 5.64728 5.75259 5.80198 6.05481 6.09097 6.22118 6.48604 6.78616 7.34457 8.88492 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.003213 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.476587 B = 8712.138083 C = 8948.975152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.049 3.951 4 O -0.329 6.329 5 C 0.117 3.883 6 C -0.187 4.187 7 C -0.072 4.072 8 C -0.090 4.090 9 C -0.118 4.118 10 C -0.071 4.071 11 C 0.057 3.943 12 C -0.527 4.527 13 H 0.052 0.948 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.040 4.040 23 C -0.160 4.160 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.152 0.848 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.179 -18.897 1.550 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.026 4.026 4 O -0.244 6.244 5 C 0.073 3.927 6 C -0.205 4.205 7 C -0.090 4.090 8 C -0.090 4.090 9 C -0.136 4.136 10 C -0.071 4.071 11 C 0.020 3.980 12 C -0.565 4.565 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.127 4.127 21 C -0.134 4.134 22 C -0.040 4.040 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.022 0.978 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.170 0.830 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.036 -18.940 1.593 24.868 hybrid contribution 0.491 1.071 -0.643 1.342 sum -15.545 -17.868 0.950 23.703 Atomic orbital electron populations 1.21686 0.92849 1.03188 1.02692 1.21495 0.97115 0.93829 1.03430 1.23146 0.77144 1.00036 1.02281 1.86038 1.22891 1.26594 1.88883 1.18655 0.92072 0.84626 0.97397 1.21224 1.01294 0.91488 1.06531 1.21117 0.92634 0.98664 0.96574 1.18285 0.94504 0.92754 1.03443 1.20878 0.94140 0.96661 1.01886 1.20106 0.94399 0.96328 0.96315 1.18130 0.94294 0.89262 0.96340 1.21391 1.38741 1.03934 0.92394 0.92929 1.25922 0.95117 0.96574 1.01770 1.70082 1.41342 1.12555 1.32980 0.85393 0.78082 0.78257 0.79306 1.19080 1.20078 1.20090 1.20936 1.00277 0.92141 0.99347 1.21148 0.93317 0.97838 1.01096 1.17924 0.93750 0.92279 1.00055 1.20205 0.92268 0.97093 1.08307 0.91870 0.91941 0.90960 0.91188 0.91094 0.91092 0.91222 0.82650 0.83446 0.86232 0.97757 0.97641 0.92536 0.86121 0.83045 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.48 6.30 30.59 0.19 -1.29 16 3 C 0.05 0.76 4.73 71.98 0.34 1.10 16 4 O -0.33 -7.65 10.11 -92.24 -0.93 -8.59 16 5 C 0.12 3.10 6.63 22.27 0.15 3.25 16 6 C -0.19 -4.51 8.93 22.14 0.20 -4.31 16 7 C -0.07 -2.02 9.76 22.32 0.22 -1.81 16 8 C -0.09 -3.17 5.74 -21.28 -0.12 -3.29 16 9 C -0.12 -4.82 9.37 22.33 0.21 -4.61 16 10 C -0.07 -3.25 5.03 -20.09 -0.10 -3.35 16 11 C 0.06 3.08 5.07 29.10 0.15 3.23 16 12 C -0.53 -30.47 9.09 25.60 0.23 -30.24 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C 0.00 0.25 5.46 84.66 0.46 0.71 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 16 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 C -0.11 -4.36 9.58 22.04 0.21 -4.14 16 21 C -0.12 -3.91 9.77 22.34 0.22 -3.69 16 22 C -0.04 -1.35 5.74 -21.30 -0.12 -1.47 16 23 C -0.16 -4.62 9.68 22.42 0.22 -4.40 16 24 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.96 7.63 -2.38 -0.02 0.94 16 30 H 0.07 0.97 7.63 -2.39 -0.02 0.95 16 31 H 0.16 2.65 6.21 -2.91 -0.02 2.64 16 32 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.00 0.24 8.07 -2.38 -0.02 0.22 16 35 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -67.08 329.75 5.56 -61.52 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.02 Total: 11.21 kcal Atomic # 6 Polarization: -58.00 SS G_CDS: 3.16 Total: -54.83 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.93 Total: -8.59 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.08 5.56 -61.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057537.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.849 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds