Wall clock time and date at job start Mon Mar 30 2020 02:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 O 1.42896 * 109.47566 * 120.00482 * 2 1 3 5 5 C 1.35885 * 117.00196 * 84.62198 * 4 2 1 6 6 C 1.39849 * 119.56470 * 354.60968 * 5 4 2 7 7 C 1.35987 * 120.93157 * 179.97438 * 6 5 4 8 8 C 1.40593 * 119.72916 * 0.04670 * 7 6 5 9 9 C 1.40523 * 121.21107 * 179.67690 * 8 7 6 10 10 C 1.36108 * 119.66751 * 179.74456 * 9 8 7 11 11 C 1.50697 * 119.50366 * 180.25495 * 10 9 8 12 12 C 1.50703 * 109.46844 * 270.25630 * 11 10 9 13 13 H 1.08003 * 119.99986 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99996 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00161 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46800 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47412 * 119.99940 * 16 14 12 19 19 H 1.48500 * 109.47224 * 240.00499 * 16 14 12 20 20 C 1.39379 * 120.99213 * 0.51500 * 10 9 8 21 21 C 1.36090 * 120.98084 * 359.76053 * 20 10 9 22 22 C 1.40574 * 119.65882 * 359.97438 * 21 20 10 23 23 C 1.36564 * 119.57029 * 174.62591 * 5 4 2 24 24 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47054 * 299.99273 * 1 2 3 26 26 H 1.08998 * 109.47821 * 59.99706 * 1 2 3 27 27 H 1.09001 * 109.47054 * 240.00727 * 2 1 3 28 28 H 1.08995 * 109.47052 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47447 * 300.00985 * 3 2 1 30 30 H 1.09001 * 109.46620 * 60.00461 * 3 2 1 31 31 H 1.08001 * 119.53582 * 0.04309 * 6 5 4 32 32 H 1.07999 * 120.13379 * 180.02562 * 7 6 5 33 33 H 1.07995 * 120.16591 * 0.25142 * 9 8 7 34 34 H 1.08997 * 109.47182 * 30.25717 * 11 10 9 35 35 H 1.09002 * 109.47259 * 150.26050 * 11 10 9 36 36 H 0.97005 * 120.00454 * 179.97438 * 15 14 12 37 37 H 1.07997 * 119.51108 * 179.73393 * 20 10 9 38 38 H 1.08001 * 120.16957 * 179.97438 * 21 20 10 39 39 H 1.08001 * 120.18646 * 359.96167 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1051 -2.0273 1.1003 6 6 1.6396 -2.6983 -0.0350 7 6 1.7251 -4.0521 -0.1309 8 6 2.2877 -4.7917 0.9241 9 6 2.3853 -6.1921 0.8607 10 6 2.9405 -6.8764 1.8981 11 6 3.0486 -8.3776 1.8237 12 6 1.8019 -9.0000 2.3977 13 1 1.0102 -8.3713 2.7778 14 6 1.6714 -10.3720 2.4365 15 7 2.6351 -11.1376 1.9731 16 14 0.1258 -11.1436 3.1472 17 1 -0.7999 -10.0730 3.5971 18 1 -0.5398 -11.9677 2.1065 19 1 0.4879 -12.0032 4.3027 20 6 3.4056 -6.2099 3.0304 21 6 3.3225 -4.8552 3.1295 22 6 2.7603 -4.1139 2.0757 23 6 2.6572 -2.7147 2.1432 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1299 1.4425 0.0005 29 1 1.6765 1.9564 -0.8898 30 1 1.6766 1.9563 0.8901 31 1 1.2072 -2.1333 -0.8474 32 1 1.3619 -4.5571 -1.0138 33 1 2.0292 -6.7221 -0.0102 34 1 3.1612 -8.6827 0.7834 35 1 3.9159 -8.7082 2.3953 36 1 2.5435 -12.1029 2.0008 37 1 3.8380 -6.7771 3.8414 38 1 3.6867 -4.3522 4.0132 39 1 3.0135 -2.1853 3.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:50 Heat of formation + Delta-G solvation = -16.217996 kcal Electronic energy + Delta-G solvation = -19429.047819 eV Core-core repulsion = 16493.919654 eV Total energy + Delta-G solvation = -2935.128166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43578 -38.91989 -35.84077 -33.41473 -33.15745 -31.99842 -30.05248 -29.10320 -27.55756 -26.62108 -23.52742 -23.36493 -21.74932 -21.48379 -20.53312 -18.14170 -16.71936 -16.36705 -16.02714 -15.54949 -15.20103 -14.56657 -14.40566 -14.21065 -13.67514 -13.26505 -13.12310 -12.88324 -12.67967 -12.60791 -12.41550 -12.36542 -12.02762 -11.66314 -11.38927 -11.25547 -11.04763 -10.91657 -10.60211 -10.52779 -10.23455 -10.21757 -9.63322 -9.49633 -9.01238 -8.44582 -7.90387 -7.13052 -6.05736 -4.10067 0.97229 1.51860 2.54660 3.20865 3.28401 3.35824 3.40206 3.47396 4.40921 4.54185 4.63935 4.69232 4.81706 4.91781 5.05319 5.22649 5.25798 5.28726 5.41518 5.46155 5.51001 5.52030 5.65944 5.69019 5.81477 5.89258 5.91800 6.02213 6.10675 6.31904 6.49771 6.52868 6.66369 6.74479 7.08129 7.12499 7.16404 7.46398 7.55024 7.66751 7.81783 7.89960 8.29688 8.95654 9.54094 11.03671 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035497 B = 0.003508 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.610876 B = 7979.552668 C = 8248.059119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.077 3.923 3 C -0.148 4.148 4 O -0.316 6.316 5 C 0.112 3.888 6 C -0.201 4.201 7 C -0.066 4.066 8 C -0.073 4.073 9 C -0.114 4.114 10 C -0.041 4.041 11 C 0.046 3.954 12 C -0.511 4.511 13 H 0.058 0.942 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.087 4.087 21 C -0.131 4.131 22 C -0.029 4.029 23 C -0.149 4.149 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 20.958 -4.400 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.020 3.980 3 C -0.205 4.205 4 O -0.230 6.230 5 C 0.068 3.932 6 C -0.220 4.220 7 C -0.084 4.084 8 C -0.073 4.073 9 C -0.132 4.132 10 C -0.041 4.041 11 C 0.010 3.990 12 C -0.550 4.550 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.105 4.105 21 C -0.149 4.149 22 C -0.029 4.029 23 C -0.168 4.168 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.082 20.911 -4.274 21.371 hybrid contribution -1.000 -0.618 0.174 1.188 sum -2.081 20.293 -4.100 20.808 Atomic orbital electron populations 1.22404 0.95318 1.03254 1.02854 1.22354 0.94191 0.93528 0.87895 1.21841 1.02072 0.93754 1.02820 1.86097 1.81699 1.16801 1.38446 1.18477 0.97766 0.82066 0.94917 1.20925 1.06820 0.95608 0.98619 1.20888 0.96602 0.93181 0.97737 1.18113 1.00844 0.94088 0.94249 1.20864 1.00879 0.91540 0.99911 1.20393 0.92759 0.98982 0.91953 1.18398 0.97892 0.84402 0.98340 1.21109 1.02337 0.91191 1.40331 0.92385 1.25013 0.96591 0.97291 0.95445 1.69965 1.32441 1.04526 1.46368 0.86486 0.83180 0.79290 0.78820 1.19641 1.20935 1.20914 1.20969 0.97956 0.93707 0.97840 1.20858 1.01915 0.94281 0.97884 1.17680 0.98935 0.91933 0.94396 1.20069 1.05249 0.92612 0.98834 0.91639 0.91533 0.91273 0.91009 0.91712 0.90744 0.91581 0.85814 0.85573 0.85924 0.95248 0.95249 0.92875 0.86044 0.86271 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.15 37.15 0.34 -1.20 16 2 C 0.08 0.74 2.84 -26.73 -0.08 0.66 16 3 C -0.15 -1.09 9.56 37.16 0.36 -0.74 16 4 O -0.32 -4.15 9.78 -19.38 -0.19 -4.34 16 5 C 0.11 1.63 6.55 -39.58 -0.26 1.38 16 6 C -0.20 -2.75 8.12 -39.79 -0.32 -3.07 16 7 C -0.07 -0.99 9.76 -39.50 -0.39 -1.38 16 8 C -0.07 -1.31 5.74 -106.81 -0.61 -1.92 16 9 C -0.11 -2.26 9.37 -39.49 -0.37 -2.63 16 10 C -0.04 -0.88 5.03 -104.96 -0.53 -1.41 16 11 C 0.05 1.18 5.07 -29.04 -0.15 1.04 16 12 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 16 13 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 16 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.09 -1.68 9.58 -39.93 -0.38 -2.06 16 21 C -0.13 -2.25 9.77 -39.47 -0.39 -2.64 16 22 C -0.03 -0.51 5.74 -106.84 -0.61 -1.12 16 23 C -0.15 -2.32 9.68 -39.35 -0.38 -2.70 16 24 H 0.06 0.63 6.85 -51.93 -0.36 0.27 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.65 6.29 -51.93 -0.33 0.33 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.12 1.35 5.32 -52.49 -0.28 1.07 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -30.39 326.11 -9.31 -39.70 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.57 Total: -0.39 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -4.18 Total: -30.83 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.74 Total: -25.52 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.19 Total: -4.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.39 -9.31 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.485 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds