Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 O 1.42896 * 109.47566 * 120.00482 * 2 1 3 5 5 C 1.35885 * 117.00196 * 84.62198 * 4 2 1 6 6 C 1.39849 * 119.56470 * 354.60968 * 5 4 2 7 7 C 1.35987 * 120.93157 * 179.97438 * 6 5 4 8 8 C 1.40593 * 119.72916 * 0.04670 * 7 6 5 9 9 C 1.40523 * 121.21107 * 179.67690 * 8 7 6 10 10 C 1.36108 * 119.66751 * 179.74456 * 9 8 7 11 11 C 1.50697 * 119.50366 * 180.25495 * 10 9 8 12 12 C 1.50703 * 109.46844 * 270.25630 * 11 10 9 13 13 H 1.08003 * 119.99986 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99996 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00161 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00374 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46800 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47412 * 119.99940 * 16 14 12 19 19 H 1.48500 * 109.47224 * 240.00499 * 16 14 12 20 20 C 1.39379 * 120.99213 * 0.51500 * 10 9 8 21 21 C 1.36090 * 120.98084 * 359.76053 * 20 10 9 22 22 C 1.40574 * 119.65882 * 359.97438 * 21 20 10 23 23 C 1.36564 * 119.57029 * 174.62591 * 5 4 2 24 24 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47054 * 299.99273 * 1 2 3 26 26 H 1.08998 * 109.47821 * 59.99706 * 1 2 3 27 27 H 1.09001 * 109.47054 * 240.00727 * 2 1 3 28 28 H 1.08995 * 109.47052 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47447 * 300.00985 * 3 2 1 30 30 H 1.09001 * 109.46620 * 60.00461 * 3 2 1 31 31 H 1.08001 * 119.53582 * 0.04309 * 6 5 4 32 32 H 1.07999 * 120.13379 * 180.02562 * 7 6 5 33 33 H 1.07995 * 120.16591 * 0.25142 * 9 8 7 34 34 H 1.08997 * 109.47182 * 30.25717 * 11 10 9 35 35 H 1.09002 * 109.47259 * 150.26050 * 11 10 9 36 36 H 0.97005 * 120.00454 * 179.97438 * 15 14 12 37 37 H 1.07997 * 119.51108 * 179.73393 * 20 10 9 38 38 H 1.08001 * 120.16957 * 179.97438 * 21 20 10 39 39 H 1.08001 * 120.18646 * 359.96167 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1051 -2.0273 1.1003 6 6 1.6396 -2.6983 -0.0350 7 6 1.7251 -4.0521 -0.1309 8 6 2.2877 -4.7917 0.9241 9 6 2.3853 -6.1921 0.8607 10 6 2.9405 -6.8764 1.8981 11 6 3.0486 -8.3776 1.8237 12 6 1.8019 -9.0000 2.3977 13 1 1.0102 -8.3713 2.7778 14 6 1.6714 -10.3720 2.4365 15 7 2.6351 -11.1376 1.9731 16 14 0.1258 -11.1436 3.1472 17 1 -0.7999 -10.0730 3.5971 18 1 -0.5398 -11.9677 2.1065 19 1 0.4879 -12.0032 4.3027 20 6 3.4056 -6.2099 3.0304 21 6 3.3225 -4.8552 3.1295 22 6 2.7603 -4.1139 2.0757 23 6 2.6572 -2.7147 2.1432 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 3.1299 1.4425 0.0005 29 1 1.6765 1.9564 -0.8898 30 1 1.6766 1.9563 0.8901 31 1 1.2072 -2.1333 -0.8474 32 1 1.3619 -4.5571 -1.0138 33 1 2.0292 -6.7221 -0.0102 34 1 3.1612 -8.6827 0.7834 35 1 3.9159 -8.7082 2.3953 36 1 2.5435 -12.1029 2.0008 37 1 3.8380 -6.7771 3.8414 38 1 3.6867 -4.3522 4.0132 39 1 3.0135 -2.1853 3.0146 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = -30.955112 kcal Electronic energy + Delta-G solvation = -19429.686869 eV Core-core repulsion = 16493.919654 eV Total energy + Delta-G solvation = -2935.767215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61502 -40.10623 -37.18930 -35.11718 -34.25567 -33.45701 -31.56876 -30.46151 -28.44473 -28.07002 -25.32826 -24.53861 -23.02062 -22.80137 -21.73858 -19.18942 -18.52973 -17.95768 -17.36746 -16.66444 -16.41709 -16.24007 -15.52854 -15.49664 -14.76886 -14.55909 -14.45607 -14.18836 -13.99410 -13.93476 -13.46744 -13.32285 -13.20212 -12.99457 -12.89302 -12.70222 -12.42349 -12.34605 -12.15581 -11.86477 -11.61313 -11.44302 -11.40396 -11.25526 -10.61828 -10.48938 -9.24156 -8.52806 -8.17232 -6.34211 -0.31993 0.17640 1.19303 1.38875 1.39381 1.53014 2.10666 2.29044 2.41267 3.09714 3.25059 3.69881 3.85224 3.92831 3.98845 4.09082 4.14511 4.20391 4.32691 4.40436 4.44809 4.56379 4.70600 4.75989 4.84168 4.89833 4.92534 5.03101 5.11192 5.20668 5.23758 5.28004 5.31427 5.36243 5.39532 5.45561 5.65283 5.75386 5.81729 6.05700 6.09362 6.22396 6.52897 6.78538 7.34446 8.88503 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035497 B = 0.003508 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.610876 B = 7979.552668 C = 8248.059119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 C -0.145 4.145 4 O -0.325 6.325 5 C 0.121 3.879 6 C -0.188 4.188 7 C -0.073 4.073 8 C -0.090 4.090 9 C -0.118 4.118 10 C -0.071 4.071 11 C 0.057 3.943 12 C -0.527 4.527 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.039 4.039 23 C -0.162 4.162 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.119 0.881 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.266 0.734 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 23.816 -4.855 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.009 3.991 3 C -0.202 4.202 4 O -0.239 6.239 5 C 0.076 3.924 6 C -0.206 4.206 7 C -0.090 4.090 8 C -0.090 4.090 9 C -0.136 4.136 10 C -0.071 4.071 11 C 0.020 3.980 12 C -0.565 4.565 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.039 4.039 23 C -0.181 4.181 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.137 0.863 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.571 23.792 -4.732 24.394 hybrid contribution -0.546 -1.243 0.216 1.375 sum -3.117 22.549 -4.517 23.207 Atomic orbital electron populations 1.22404 0.94368 1.02859 1.04006 1.22747 0.95025 0.94415 0.86898 1.21873 1.01911 0.92405 1.04018 1.86116 1.81538 1.15818 1.40471 1.18637 0.96173 0.83019 0.94579 1.21254 1.05171 0.95128 0.99024 1.21116 0.96406 0.93819 0.97695 1.18276 1.01800 0.93218 0.95711 1.20879 1.00640 0.92832 0.99234 1.20099 0.96070 0.96750 0.94221 1.18126 0.96267 0.87612 0.95994 1.21400 1.02994 0.91731 1.40413 0.92920 1.25916 0.99929 0.97798 0.95693 1.70083 1.34489 1.04960 1.47441 0.85394 0.79062 0.78334 0.78252 1.19091 1.20076 1.20069 1.20929 0.99482 0.94884 0.97380 1.21145 1.00300 0.93238 0.98785 1.17921 0.98799 0.92996 0.94224 1.20202 1.06003 0.91820 1.00089 0.92745 0.91887 0.88742 0.90131 0.92028 0.88237 0.91726 0.82631 0.83517 0.86255 0.97766 0.97661 0.92529 0.86155 0.83107 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.15 71.98 0.66 -1.75 16 2 C 0.06 1.01 2.84 30.59 0.09 1.09 16 3 C -0.15 -1.64 9.56 71.98 0.69 -0.96 16 4 O -0.32 -7.54 9.78 -92.26 -0.90 -8.44 16 5 C 0.12 3.19 6.55 22.27 0.15 3.34 16 6 C -0.19 -4.54 8.12 22.14 0.18 -4.36 16 7 C -0.07 -2.05 9.76 22.32 0.22 -1.83 16 8 C -0.09 -3.19 5.74 -21.28 -0.12 -3.31 16 9 C -0.12 -4.84 9.37 22.33 0.21 -4.64 16 10 C -0.07 -3.26 5.03 -20.09 -0.10 -3.36 16 11 C 0.06 3.10 5.07 29.10 0.15 3.25 16 12 C -0.53 -30.58 9.09 25.60 0.23 -30.35 16 13 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.27 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 16 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 C -0.11 -4.36 9.58 22.04 0.21 -4.15 16 21 C -0.12 -3.95 9.77 22.34 0.22 -3.73 16 22 C -0.04 -1.33 5.74 -21.30 -0.12 -1.45 16 23 C -0.16 -4.71 9.68 22.42 0.22 -4.50 16 24 H 0.05 0.86 6.85 -2.38 -0.02 0.84 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.13 6.29 -2.39 -0.02 1.11 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.16 2.74 5.32 -2.91 -0.02 2.72 16 32 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 33 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 35 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 36 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 37 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -67.47 326.11 5.77 -61.70 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.03 Total: 12.02 kcal Atomic # 6 Polarization: -59.29 SS G_CDS: 3.33 Total: -55.96 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.90 Total: -8.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -67.47 5.77 -61.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.748 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds