Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 H 1.09000 * 109.47558 * 53.85404 * 3 2 1 5 5 C 1.50705 * 109.47157 * 173.85795 * 3 2 1 6 6 H 1.08001 * 120.00162 * 125.31112 * 5 3 2 7 7 C 1.37874 * 119.99651 * 305.30919 * 5 3 2 8 8 N 1.31512 * 120.00101 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00199 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47364 * 89.99959 * 9 7 5 11 11 H 1.48507 * 109.47491 * 210.00272 * 9 7 5 12 12 H 1.48502 * 109.47275 * 329.99790 * 9 7 5 13 13 N 1.46906 * 109.47178 * 293.85517 * 3 2 1 14 14 C 1.47186 * 111.00189 * 127.55319 * 13 3 2 15 15 C 1.52985 * 108.72822 * 54.36949 * 14 13 3 16 16 N 1.45990 * 110.10855 * 50.07203 * 15 14 13 17 17 C 1.33719 * 122.93770 * 342.33248 * 16 15 14 18 18 O 1.21279 * 118.62835 * 181.40044 * 17 16 15 19 19 C 1.46899 * 110.99749 * 250.44624 * 13 3 2 20 20 H 1.09010 * 109.30254 * 166.82951 * 19 13 3 21 21 C 1.50693 * 109.39097 * 47.08855 * 19 13 3 22 22 O 1.20830 * 120.00250 * 30.18230 * 21 19 13 23 23 O 1.34232 * 120.00064 * 210.18753 * 21 19 13 24 24 C 1.45202 * 116.99925 * 179.97438 * 23 21 19 25 25 H 1.08991 * 109.46949 * 306.25501 * 1 2 3 26 26 H 1.08996 * 109.47409 * 66.25689 * 1 2 3 27 27 H 1.09005 * 109.47202 * 186.25523 * 1 2 3 28 28 H 1.09004 * 109.47219 * 239.99757 * 2 1 3 29 29 H 1.08997 * 109.47364 * 120.00246 * 2 1 3 30 30 H 0.97002 * 120.00622 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.59306 * 174.13985 * 14 13 3 32 32 H 1.09001 * 109.59184 * 294.44729 * 14 13 3 33 33 H 1.08995 * 109.37435 * 170.46960 * 15 14 13 34 34 H 1.09004 * 109.37529 * 290.23367 * 15 14 13 35 35 H 0.96996 * 118.53060 * 162.07405 * 16 15 14 36 36 H 1.09002 * 109.47476 * 299.99807 * 24 23 21 37 37 H 1.09004 * 109.47532 * 59.99563 * 24 23 21 38 38 H 1.08996 * 109.47209 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5896 1.9871 0.8298 5 6 3.5393 1.4452 0.1520 6 1 4.1546 1.9592 -0.5716 7 6 4.1256 0.7915 1.2150 8 7 5.4340 0.7934 1.3475 9 14 3.0615 -0.0981 2.4663 10 1 2.8597 -1.5044 2.0338 11 1 3.7335 -0.0791 3.7904 12 1 1.7453 0.5818 2.5694 13 7 1.6751 2.0909 -1.2667 14 6 0.9744 3.3626 -1.0257 15 6 1.8418 4.2370 -0.1183 16 7 3.2028 4.3082 -0.6416 17 6 3.6848 3.4376 -1.5348 18 8 4.8361 3.5546 -1.8977 19 6 2.8613 2.3166 -2.1033 20 1 2.5454 2.5762 -3.1139 21 6 3.6902 1.0589 -2.1459 22 8 3.1558 -0.0205 -2.0489 23 8 5.0223 1.1375 -2.2916 24 6 5.7570 -0.1145 -2.3237 25 1 -0.3633 0.6077 0.8286 26 1 -0.3634 0.4138 -0.9406 27 1 -0.3634 -1.0216 0.1120 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8465 0.3338 2.0955 31 1 0.8071 3.8732 -1.9740 32 1 0.0174 3.1667 -0.5421 33 1 1.4174 5.2398 -0.0693 34 1 1.8672 3.8059 0.8826 35 1 3.7822 5.0211 -0.3303 36 1 5.5958 -0.6545 -1.3907 37 1 5.4062 -0.7203 -3.1593 38 1 6.8203 0.0913 -2.4457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -50.948155 kcal Electronic energy + Delta-G solvation = -23916.761374 eV Core-core repulsion = 20569.277933 eV Total energy + Delta-G solvation = -3347.483441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07211 -38.52292 -37.02897 -35.08743 -34.30379 -32.64157 -31.91135 -29.83726 -27.65519 -26.97203 -25.28430 -23.16509 -22.11839 -20.76825 -20.59318 -18.17007 -17.79701 -16.73449 -16.72408 -15.70487 -15.37119 -15.21781 -14.83030 -14.43132 -13.82823 -13.60171 -13.36557 -12.89292 -12.66776 -12.36213 -12.14338 -12.13541 -11.92631 -11.61844 -11.46589 -11.13512 -10.97465 -10.80592 -10.71361 -10.29285 -9.94569 -9.65898 -9.39579 -9.32769 -8.93652 -8.71781 -8.63936 -8.37639 -7.54075 -6.23313 -4.28959 3.11744 3.20832 3.31386 3.32857 3.61763 3.72506 3.95290 4.30682 4.59991 5.03326 5.13346 5.33121 5.39891 5.49918 5.74671 5.83589 5.97104 6.02498 6.06716 6.11257 6.18738 6.22032 6.30254 6.53339 6.57839 6.76142 6.92636 7.02722 7.10633 7.29032 7.41412 7.68572 7.72544 7.91305 7.97808 8.23217 8.64793 8.95462 9.14752 9.33984 10.83207 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.013210 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.136055 B = 2119.165816 C = 2618.004200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.177 3.823 4 H 0.029 0.971 5 C -0.581 4.581 6 H 0.122 0.878 7 C 0.091 3.909 8 N -0.865 5.865 9 Si 0.899 3.101 10 H -0.278 1.278 11 H -0.304 1.304 12 H -0.268 1.268 13 N -0.501 5.501 14 C 0.041 3.959 15 C 0.079 3.921 16 N -0.715 5.715 17 C 0.521 3.479 18 O -0.535 6.535 19 C 0.089 3.911 20 H 0.118 0.882 21 C 0.515 3.485 22 O -0.506 6.506 23 O -0.335 6.335 24 C 0.053 3.947 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.578 4.354 -3.955 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.171 4.171 3 C 0.070 3.930 4 H 0.047 0.953 5 C -0.617 4.617 6 H 0.139 0.861 7 C -0.116 4.116 8 N -0.500 5.500 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.232 1.232 12 H -0.193 1.193 13 N -0.226 5.226 14 C -0.088 4.088 15 C -0.047 4.047 16 N -0.368 5.368 17 C 0.307 3.693 18 O -0.411 6.411 19 C -0.025 4.025 20 H 0.136 0.864 21 C 0.361 3.639 22 O -0.395 6.395 23 O -0.251 6.251 24 C -0.041 4.041 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.127 0.873 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.399 3.503 -4.374 9.282 hybrid contribution 0.223 0.099 1.764 1.781 sum -7.176 3.603 -2.610 8.443 Atomic orbital electron populations 1.21725 0.98106 0.99269 1.00727 1.22273 0.93331 0.98848 1.02613 1.19894 0.95788 0.91784 0.85504 0.95311 1.22177 0.90172 1.36473 1.12876 0.86125 1.24935 0.94754 0.94732 0.97156 1.69953 1.09242 1.40788 1.30062 0.86713 0.80277 0.80640 0.79316 1.20524 1.23223 1.19316 1.62755 1.20533 1.20278 1.19047 1.22561 0.97537 0.89447 0.99277 1.22006 0.82938 1.00310 0.99469 1.45203 1.14643 1.32098 1.44843 1.20043 0.88086 0.82182 0.79022 1.90787 1.17099 1.72502 1.60693 1.21402 0.90927 0.90582 0.99542 0.86419 1.21197 0.81631 0.89545 0.71530 1.90353 1.72547 1.29618 1.47024 1.86650 1.19870 1.34582 1.83987 1.22909 0.94810 0.84979 1.01447 0.94749 0.92325 0.94794 0.87319 0.94708 0.92400 0.90551 0.88760 0.91354 0.90986 0.76992 0.91714 0.93950 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.74 37.16 0.36 -2.23 16 2 C -0.13 -3.01 4.65 -26.73 -0.12 -3.13 16 3 C 0.18 3.93 0.67 -68.86 -0.05 3.88 16 4 H 0.03 0.64 5.51 -51.93 -0.29 0.36 16 5 C -0.58 -15.06 5.42 -34.44 -0.19 -15.24 16 6 H 0.12 3.30 2.00 -52.49 -0.11 3.20 16 7 C 0.09 2.51 5.44 -17.82 -0.10 2.42 16 8 N -0.87 -25.13 13.96 55.43 0.77 -24.36 16 9 Si 0.90 21.98 24.26 -169.99 -4.12 17.85 16 10 H -0.28 -6.88 6.85 56.52 0.39 -6.49 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.23 6.56 56.52 0.37 -5.86 16 13 N -0.50 -9.55 4.23 -222.90 -0.94 -10.49 16 14 C 0.04 0.58 5.89 -3.68 -0.02 0.56 16 15 C 0.08 1.16 6.59 -4.32 -0.03 1.13 16 16 N -0.71 -12.76 5.25 -61.07 -0.32 -13.08 16 17 C 0.52 11.11 4.73 -11.67 -0.06 11.06 16 18 O -0.53 -13.30 15.52 -16.98 -0.26 -13.56 16 19 C 0.09 1.81 2.92 -70.23 -0.21 1.61 16 20 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 21 C 0.51 12.13 4.39 36.00 0.16 12.29 16 22 O -0.51 -12.45 12.01 -18.75 -0.23 -12.67 16 23 O -0.34 -8.16 7.76 -46.75 -0.36 -8.52 16 24 C 0.05 1.12 10.56 101.05 1.07 2.18 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.01 7.96 -51.93 -0.41 0.60 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.11 2.66 4.70 -52.10 -0.25 2.42 16 29 H 0.04 0.84 2.49 -51.93 -0.13 0.71 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.19 6.57 -51.93 -0.34 0.85 16 35 H 0.39 6.59 8.84 -40.82 -0.36 6.23 16 36 H 0.06 1.52 8.13 -51.93 -0.42 1.09 16 37 H 0.04 0.78 8.13 -51.93 -0.42 0.35 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 284.08 15.07 4.28 4.28 Total: -1.00 -32.78 284.08 -5.22 -38.00 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.86 Total: 8.04 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 0.82 Total: 14.52 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.49 Total: -47.93 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.85 Total: -34.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.12 Total: 17.85 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.78 -5.22 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.945 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds