Wall clock time and date at job start Mon Mar 30 2020 01:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 H 1.09000 * 109.47558 * 53.85404 * 3 2 1 5 5 C 1.50705 * 109.47157 * 173.85795 * 3 2 1 6 6 H 1.08001 * 120.00162 * 125.31112 * 5 3 2 7 7 C 1.37874 * 119.99651 * 305.30919 * 5 3 2 8 8 N 1.31512 * 120.00101 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00199 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47364 * 89.99959 * 9 7 5 11 11 H 1.48507 * 109.47491 * 210.00272 * 9 7 5 12 12 H 1.48502 * 109.47275 * 329.99790 * 9 7 5 13 13 N 1.46906 * 109.47178 * 293.85517 * 3 2 1 14 14 C 1.47186 * 111.00189 * 127.55319 * 13 3 2 15 15 C 1.52985 * 108.72822 * 54.36949 * 14 13 3 16 16 N 1.45990 * 110.10855 * 50.07203 * 15 14 13 17 17 C 1.33719 * 122.93770 * 342.33248 * 16 15 14 18 18 O 1.21279 * 118.62835 * 181.40044 * 17 16 15 19 19 C 1.46899 * 110.99749 * 250.44624 * 13 3 2 20 20 H 1.09010 * 109.30254 * 166.82951 * 19 13 3 21 21 C 1.50693 * 109.39097 * 47.08855 * 19 13 3 22 22 O 1.20830 * 120.00250 * 30.18230 * 21 19 13 23 23 O 1.34232 * 120.00064 * 210.18753 * 21 19 13 24 24 C 1.45202 * 116.99925 * 179.97438 * 23 21 19 25 25 H 1.08991 * 109.46949 * 306.25501 * 1 2 3 26 26 H 1.08996 * 109.47409 * 66.25689 * 1 2 3 27 27 H 1.09005 * 109.47202 * 186.25523 * 1 2 3 28 28 H 1.09004 * 109.47219 * 239.99757 * 2 1 3 29 29 H 1.08997 * 109.47364 * 120.00246 * 2 1 3 30 30 H 0.97002 * 120.00622 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.59306 * 174.13985 * 14 13 3 32 32 H 1.09001 * 109.59184 * 294.44729 * 14 13 3 33 33 H 1.08995 * 109.37435 * 170.46960 * 15 14 13 34 34 H 1.09004 * 109.37529 * 290.23367 * 15 14 13 35 35 H 0.96996 * 118.53060 * 162.07405 * 16 15 14 36 36 H 1.09002 * 109.47476 * 299.99807 * 24 23 21 37 37 H 1.09004 * 109.47532 * 59.99563 * 24 23 21 38 38 H 1.08996 * 109.47209 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5896 1.9871 0.8298 5 6 3.5393 1.4452 0.1520 6 1 4.1546 1.9592 -0.5716 7 6 4.1256 0.7915 1.2150 8 7 5.4340 0.7934 1.3475 9 14 3.0615 -0.0981 2.4663 10 1 2.8597 -1.5044 2.0338 11 1 3.7335 -0.0791 3.7904 12 1 1.7453 0.5818 2.5694 13 7 1.6751 2.0909 -1.2667 14 6 0.9744 3.3626 -1.0257 15 6 1.8418 4.2370 -0.1183 16 7 3.2028 4.3082 -0.6416 17 6 3.6848 3.4376 -1.5348 18 8 4.8361 3.5546 -1.8977 19 6 2.8613 2.3166 -2.1033 20 1 2.5454 2.5762 -3.1139 21 6 3.6902 1.0589 -2.1459 22 8 3.1558 -0.0205 -2.0489 23 8 5.0223 1.1375 -2.2916 24 6 5.7570 -0.1145 -2.3237 25 1 -0.3633 0.6077 0.8286 26 1 -0.3634 0.4138 -0.9406 27 1 -0.3634 -1.0216 0.1120 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 5.8465 0.3338 2.0955 31 1 0.8071 3.8732 -1.9740 32 1 0.0174 3.1667 -0.5421 33 1 1.4174 5.2398 -0.0693 34 1 1.8672 3.8059 0.8826 35 1 3.7822 5.0211 -0.3303 36 1 5.5958 -0.6545 -1.3907 37 1 5.4062 -0.7203 -3.1593 38 1 6.8203 0.0913 -2.4457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:12 Heat of formation + Delta-G solvation = -77.296454 kcal Electronic energy + Delta-G solvation = -23917.903922 eV Core-core repulsion = 20569.277933 eV Total energy + Delta-G solvation = -3348.625989 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.70809 -40.24874 -38.68198 -36.85554 -35.97017 -34.40568 -33.64792 -31.32810 -29.36598 -28.61617 -26.88126 -24.72949 -23.72638 -22.49354 -22.20392 -19.83604 -19.57323 -18.41181 -18.34407 -17.35052 -17.03777 -16.94265 -16.57495 -16.09589 -15.49469 -15.22847 -14.96019 -14.55576 -14.33141 -14.03268 -13.84698 -13.62886 -13.35133 -13.21765 -13.13194 -12.74270 -12.69568 -12.53937 -12.19526 -11.96949 -11.71350 -11.41880 -11.17529 -11.13635 -10.79043 -10.70620 -10.46697 -9.83804 -9.08443 -8.30032 -6.35167 1.25163 1.29417 1.39506 1.45813 1.87763 2.14288 2.26667 2.49886 3.04315 3.14344 3.65664 4.03618 4.11692 4.13079 4.33417 4.39959 4.49062 4.50764 4.54510 4.61586 4.71928 4.79356 4.85499 4.96293 5.03238 5.19741 5.30302 5.41963 5.51904 5.63090 5.88497 5.95957 6.08356 6.14413 6.36702 6.48838 6.69468 7.29425 7.33126 7.38597 8.79167 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015304 B = 0.013210 C = 0.010693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.136055 B = 2119.165816 C = 2618.004200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.138 4.138 3 C 0.182 3.818 4 H 0.038 0.962 5 C -0.572 4.572 6 H 0.108 0.892 7 C 0.038 3.962 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.290 1.290 11 H -0.311 1.311 12 H -0.243 1.243 13 N -0.498 5.498 14 C 0.035 3.965 15 C 0.075 3.925 16 N -0.708 5.708 17 C 0.515 3.485 18 O -0.582 6.582 19 C 0.089 3.911 20 H 0.152 0.848 21 C 0.504 3.496 22 O -0.522 6.522 23 O -0.356 6.356 24 C 0.053 3.947 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.014 0.986 30 H 0.262 0.738 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.054 0.946 35 H 0.399 0.601 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.744 5.714 -4.339 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.608 4.608 6 H 0.125 0.875 7 C -0.163 4.163 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.218 1.218 11 H -0.241 1.241 12 H -0.167 1.167 13 N -0.223 5.223 14 C -0.092 4.092 15 C -0.050 4.050 16 N -0.360 5.360 17 C 0.301 3.699 18 O -0.462 6.462 19 C -0.024 4.024 20 H 0.169 0.831 21 C 0.351 3.649 22 O -0.412 6.412 23 O -0.272 6.272 24 C -0.041 4.041 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.235 0.765 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.634 4.899 -4.743 12.632 hybrid contribution 1.202 -0.289 1.798 2.182 sum -9.431 4.609 -2.945 10.903 Atomic orbital electron populations 1.21629 0.94600 1.00505 1.02120 1.22226 0.96474 0.98345 1.00470 1.19747 0.93144 0.92334 0.87377 0.94434 1.22598 0.92460 1.34263 1.11491 0.87547 1.25623 0.95431 0.96017 0.99273 1.70085 1.10879 1.43160 1.31062 0.85935 0.80016 0.79285 0.77047 1.21762 1.24053 1.16690 1.62742 1.19370 1.23091 1.17142 1.22905 0.97732 0.87289 1.01317 1.22269 0.81228 1.03301 0.98198 1.45268 1.16199 1.31084 1.43407 1.20291 0.87587 0.82599 0.79429 1.90758 1.19077 1.73778 1.62553 1.21515 0.90727 0.88601 1.01578 0.83089 1.21951 0.81515 0.90662 0.70790 1.90356 1.72716 1.30570 1.47583 1.86652 1.20778 1.35903 1.83899 1.23004 0.96074 0.84370 1.00643 0.93294 0.90856 0.93784 0.89634 0.96760 0.92912 0.87359 0.85869 0.86320 0.92771 0.76539 0.95030 0.91437 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.74 71.98 0.70 -3.63 16 2 C -0.14 -5.95 4.65 30.59 0.14 -5.81 16 3 C 0.18 7.66 0.67 44.17 0.03 7.69 16 4 H 0.04 1.55 5.51 -2.39 -0.01 1.53 16 5 C -0.57 -29.56 5.42 25.60 0.14 -29.42 16 6 H 0.11 5.88 2.00 -2.91 -0.01 5.87 16 7 C 0.04 2.15 5.44 84.65 0.46 2.61 16 8 N -0.91 -55.16 13.96 21.45 0.30 -54.86 16 9 Si 0.95 45.66 24.26 68.60 1.66 47.32 16 10 H -0.29 -14.32 6.85 99.48 0.68 -13.64 16 11 H -0.31 -15.18 7.11 99.48 0.71 -14.47 16 12 H -0.24 -10.56 6.56 99.48 0.65 -9.91 16 13 N -0.50 -17.33 4.23 -859.11 -3.63 -20.96 16 14 C 0.03 0.82 5.89 86.24 0.51 1.33 16 15 C 0.07 1.86 6.59 86.47 0.57 2.43 16 16 N -0.71 -23.68 5.25 -466.12 -2.45 -26.13 16 17 C 0.51 21.36 4.73 87.68 0.41 21.77 16 18 O -0.58 -29.18 15.52 18.53 0.29 -28.89 16 19 C 0.09 3.46 2.92 43.28 0.13 3.58 16 20 H 0.15 4.80 8.14 -2.38 -0.02 4.78 16 21 C 0.50 23.68 4.39 71.23 0.31 23.99 16 22 O -0.52 -25.74 12.01 21.95 0.26 -25.47 16 23 O -0.36 -17.67 7.76 -44.28 -0.34 -18.02 16 24 C 0.05 2.30 10.56 113.37 1.20 3.49 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.20 7.96 -2.39 -0.02 2.18 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.09 4.13 4.70 -5.09 -0.02 4.11 16 29 H 0.01 0.68 2.49 -2.39 -0.01 0.67 16 30 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.11 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.59 6.57 -2.38 -0.02 1.58 16 35 H 0.40 12.66 8.84 -92.71 -0.82 11.84 16 36 H 0.03 1.54 8.13 -2.39 -0.02 1.52 16 37 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 38 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 Total: -1.00 -74.20 284.08 0.88 -73.31 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.19 Total: 25.65 kcal Atomic # 6 Polarization: 23.43 SS G_CDS: 4.60 Total: 28.04 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.78 Total: -101.94 kcal Atomic # 8 Polarization: -72.59 SS G_CDS: 0.21 Total: -72.38 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.66 Total: 47.32 kcal Total: -74.20 0.88 -73.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.986 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds