Wall clock time and date at job start Mon Mar 30 2020 01:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47566 * 2 1 4 4 H 1.09009 * 109.46851 * 303.81723 * 3 2 1 5 5 C 1.50697 * 109.47535 * 183.81815 * 3 2 1 6 6 H 1.08001 * 119.99850 * 275.13500 * 5 3 2 7 7 C 1.37878 * 120.00122 * 95.13394 * 5 3 2 8 8 N 1.31510 * 120.00089 * 184.83932 * 7 5 3 9 9 Si 1.86798 * 119.99907 * 4.84159 * 7 5 3 10 10 H 1.48500 * 109.47510 * 84.86003 * 9 7 5 11 11 H 1.48497 * 109.47274 * 204.86192 * 9 7 5 12 12 H 1.48505 * 109.47396 * 324.86082 * 9 7 5 13 13 N 1.46903 * 109.47064 * 63.81439 * 3 2 1 14 14 C 1.47189 * 110.99580 * 67.11017 * 13 3 2 15 15 C 1.52987 * 108.72494 * 192.36442 * 14 13 3 16 16 N 1.46008 * 110.04283 * 309.71004 * 15 14 13 17 17 C 1.33715 * 122.92588 * 18.16245 * 16 15 14 18 18 O 1.21285 * 118.61961 * 178.30948 * 17 16 15 19 19 C 1.46894 * 111.00043 * 190.00337 * 13 3 2 20 20 H 1.08997 * 109.38770 * 306.49627 * 19 13 3 21 21 C 1.50704 * 109.38559 * 66.28474 * 19 13 3 22 22 O 1.20819 * 120.00295 * 0.20526 * 21 19 13 23 23 O 1.34230 * 119.99905 * 180.21028 * 21 19 13 24 24 C 1.45199 * 117.00062 * 179.97438 * 23 21 19 25 25 H 1.09000 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 299.99985 * 1 2 3 27 27 H 1.09006 * 109.47248 * 60.00197 * 1 2 3 28 28 H 1.09002 * 109.47018 * 239.99548 * 2 1 3 29 29 H 1.09002 * 109.47313 * 120.00562 * 2 1 3 30 30 H 0.97003 * 120.00184 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.59538 * 312.13848 * 14 13 3 32 32 H 1.08999 * 109.59204 * 72.59407 * 14 13 3 33 33 H 1.08994 * 109.37613 * 69.89156 * 15 14 13 34 34 H 1.09005 * 109.37199 * 189.64948 * 15 14 13 35 35 H 0.97000 * 118.53063 * 198.16438 * 16 15 14 36 36 H 1.09001 * 109.47131 * 60.00144 * 24 23 21 37 37 H 1.09007 * 109.47203 * 179.97438 * 24 23 21 38 38 H 1.08993 * 109.47129 * 299.99778 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6219 1.9757 -0.8539 5 6 3.5441 1.4435 -0.0946 6 1 4.1414 1.3395 0.7991 7 6 4.1575 1.5772 -1.3221 8 7 5.4658 1.4828 -1.4172 9 14 3.1304 1.8924 -2.8502 10 1 2.8680 3.3484 -2.9787 11 1 3.8659 1.4143 -4.0484 12 1 1.8405 1.1651 -2.7384 13 7 1.6271 2.1079 1.2429 14 6 2.3078 1.5191 2.4076 15 6 1.6260 2.0226 3.6812 16 7 1.5039 3.4771 3.6419 17 6 1.6044 4.1846 2.5117 18 8 1.4593 5.3876 2.5646 19 6 1.8894 3.5518 1.1792 20 1 2.9337 3.7185 0.9154 21 6 1.0032 4.1754 0.1318 22 8 0.2308 3.4881 -0.4932 23 8 1.0722 5.4946 -0.1067 24 6 0.1897 6.0265 -1.1297 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8974 1.5773 -2.2807 31 1 2.2382 0.4324 2.3609 32 1 3.3552 1.8208 2.4099 33 1 0.6338 1.5784 3.7601 34 1 2.2210 1.7346 4.5479 35 1 1.3428 3.9511 4.4727 36 1 -0.8465 5.8328 -0.8522 37 1 0.3460 7.1014 -1.2214 38 1 0.4067 5.5448 -2.0830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:15 Heat of formation + Delta-G solvation = -101.556981 kcal Electronic energy + Delta-G solvation = -22865.713500 eV Core-core repulsion = 19516.035495 eV Total energy + Delta-G solvation = -3349.678005 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71666 -39.19585 -37.49205 -35.83017 -34.89608 -32.56197 -31.96008 -29.80578 -28.14571 -27.22748 -25.37460 -23.52464 -22.53991 -21.16645 -19.44356 -18.87155 -17.68829 -17.14661 -16.86080 -16.34473 -16.01851 -15.50309 -15.07496 -14.57100 -14.28993 -13.98232 -13.59727 -13.10323 -12.88709 -12.64260 -12.56199 -12.34746 -11.99792 -11.86390 -11.63736 -11.43968 -11.28745 -10.97876 -10.51897 -10.38183 -10.27611 -10.05573 -9.95732 -9.72128 -9.57575 -9.16481 -8.88774 -8.67876 -7.55988 -6.26949 -4.31029 2.50694 2.74988 3.19369 3.21359 3.29192 3.37140 3.53269 4.28189 4.45722 4.81705 5.08136 5.13793 5.22444 5.38487 5.45550 5.54777 5.57448 5.75420 5.85075 5.97354 6.12188 6.16491 6.30680 6.38390 6.61961 6.72089 6.80145 6.88105 6.93223 7.13282 7.18049 7.33966 7.40740 7.60114 7.87606 8.25990 8.27952 8.39212 8.75110 9.37160 10.84621 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.010298 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.373448 B = 2718.372878 C = 3384.453094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 C 0.166 3.834 4 H 0.064 0.936 5 C -0.560 4.560 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.503 5.503 14 C 0.038 3.962 15 C 0.111 3.889 16 N -0.714 5.714 17 C 0.536 3.464 18 O -0.540 6.540 19 C 0.078 3.922 20 H 0.127 0.873 21 C 0.484 3.516 22 O -0.483 6.483 23 O -0.342 6.342 24 C 0.037 3.963 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 2.042 6.686 10.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C 0.060 3.940 4 H 0.081 0.919 5 C -0.598 4.598 6 H 0.099 0.901 7 C -0.120 4.120 8 N -0.523 5.523 9 Si 0.689 3.311 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.230 5.230 14 C -0.090 4.090 15 C -0.013 4.013 16 N -0.367 5.367 17 C 0.322 3.678 18 O -0.416 6.416 19 C -0.035 4.035 20 H 0.144 0.856 21 C 0.325 3.675 22 O -0.369 6.369 23 O -0.258 6.258 24 C -0.058 4.058 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.116 0.884 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.789 2.300 6.203 11.000 hybrid contribution 0.416 0.292 -0.919 1.050 sum -8.372 2.592 5.284 10.234 Atomic orbital electron populations 1.21723 0.97420 0.98823 1.01932 1.21646 0.93743 0.97901 1.00745 1.20055 0.94314 0.91812 0.87808 0.91856 1.21637 0.90266 1.52475 0.95436 0.90139 1.24989 0.94642 0.93683 0.98731 1.69899 1.08688 1.48303 1.25450 0.87057 0.81404 0.79522 0.83120 1.20135 1.21184 1.18091 1.62915 1.56373 0.97849 1.05842 1.22427 0.97087 1.01224 0.88263 1.21689 1.01362 0.79241 0.99056 1.45453 1.73259 1.08554 1.09390 1.19601 0.75959 0.86777 0.85510 1.90780 1.50217 1.14182 1.86462 1.21099 1.00626 0.91939 0.89847 0.85642 1.22745 0.81579 0.80541 0.82647 1.90622 1.36136 1.62326 1.47777 1.86609 1.59777 1.24729 1.54655 1.23194 0.93451 0.99125 0.89987 0.95086 0.92369 0.93730 0.92700 0.92983 0.92374 0.88055 0.92264 0.91204 0.90556 0.76653 0.92227 0.88393 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.79 37.16 0.36 -2.21 16 2 C -0.10 -2.06 5.33 -26.73 -0.14 -2.20 16 3 C 0.17 3.70 1.02 -68.87 -0.07 3.63 16 4 H 0.06 1.56 2.96 -51.92 -0.15 1.41 16 5 C -0.56 -14.22 7.42 -34.44 -0.26 -14.48 16 6 H 0.08 2.16 6.27 -52.49 -0.33 1.83 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 9 Si 0.86 21.28 26.99 -169.99 -4.59 16.70 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.23 6.82 56.52 0.39 -5.85 16 13 N -0.50 -9.75 3.55 -222.91 -0.79 -10.55 16 14 C 0.04 0.61 4.65 -3.67 -0.02 0.60 16 15 C 0.11 1.36 7.39 -4.31 -0.03 1.32 16 16 N -0.71 -10.03 5.52 -61.07 -0.34 -10.36 16 17 C 0.54 9.80 7.36 -11.68 -0.09 9.71 16 18 O -0.54 -11.09 16.49 -11.44 -0.19 -11.28 16 19 C 0.08 1.57 2.30 -70.24 -0.16 1.41 16 20 H 0.13 2.75 7.25 -51.93 -0.38 2.37 16 21 C 0.48 10.28 6.78 36.01 0.24 10.53 16 22 O -0.48 -10.84 14.16 -18.74 -0.27 -11.10 16 23 O -0.34 -6.76 9.54 -45.19 -0.43 -7.19 16 24 C 0.04 0.55 10.56 101.05 1.07 1.62 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.97 6.23 -51.93 -0.32 0.64 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.10 1.56 6.04 -51.93 -0.31 1.24 16 32 H 0.06 1.05 6.59 -51.93 -0.34 0.71 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.62 8.84 -40.82 -0.36 4.26 16 36 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -31.60 304.65 -5.56 -37.15 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.13 Total: 4.73 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 0.81 Total: 12.13 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.36 Total: -45.74 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.89 Total: -29.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.60 -5.56 -37.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.403 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds