Wall clock time and date at job start Mon Mar 30 2020 01:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47566 * 2 1 4 4 H 1.09009 * 109.46851 * 303.81723 * 3 2 1 5 5 C 1.50697 * 109.47535 * 183.81815 * 3 2 1 6 6 H 1.08001 * 119.99850 * 275.13500 * 5 3 2 7 7 C 1.37878 * 120.00122 * 95.13394 * 5 3 2 8 8 N 1.31510 * 120.00089 * 184.83932 * 7 5 3 9 9 Si 1.86798 * 119.99907 * 4.84159 * 7 5 3 10 10 H 1.48500 * 109.47510 * 84.86003 * 9 7 5 11 11 H 1.48497 * 109.47274 * 204.86192 * 9 7 5 12 12 H 1.48505 * 109.47396 * 324.86082 * 9 7 5 13 13 N 1.46903 * 109.47064 * 63.81439 * 3 2 1 14 14 C 1.47189 * 110.99580 * 67.11017 * 13 3 2 15 15 C 1.52987 * 108.72494 * 192.36442 * 14 13 3 16 16 N 1.46008 * 110.04283 * 309.71004 * 15 14 13 17 17 C 1.33715 * 122.92588 * 18.16245 * 16 15 14 18 18 O 1.21285 * 118.61961 * 178.30948 * 17 16 15 19 19 C 1.46894 * 111.00043 * 190.00337 * 13 3 2 20 20 H 1.08997 * 109.38770 * 306.49627 * 19 13 3 21 21 C 1.50704 * 109.38559 * 66.28474 * 19 13 3 22 22 O 1.20819 * 120.00295 * 0.20526 * 21 19 13 23 23 O 1.34230 * 119.99905 * 180.21028 * 21 19 13 24 24 C 1.45199 * 117.00062 * 179.97438 * 23 21 19 25 25 H 1.09000 * 109.47445 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47016 * 299.99985 * 1 2 3 27 27 H 1.09006 * 109.47248 * 60.00197 * 1 2 3 28 28 H 1.09002 * 109.47018 * 239.99548 * 2 1 3 29 29 H 1.09002 * 109.47313 * 120.00562 * 2 1 3 30 30 H 0.97003 * 120.00184 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.59538 * 312.13848 * 14 13 3 32 32 H 1.08999 * 109.59204 * 72.59407 * 14 13 3 33 33 H 1.08994 * 109.37613 * 69.89156 * 15 14 13 34 34 H 1.09005 * 109.37199 * 189.64948 * 15 14 13 35 35 H 0.97000 * 118.53063 * 198.16438 * 16 15 14 36 36 H 1.09001 * 109.47131 * 60.00144 * 24 23 21 37 37 H 1.09007 * 109.47203 * 179.97438 * 24 23 21 38 38 H 1.08993 * 109.47129 * 299.99778 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6219 1.9757 -0.8539 5 6 3.5441 1.4435 -0.0946 6 1 4.1414 1.3395 0.7991 7 6 4.1575 1.5772 -1.3221 8 7 5.4658 1.4828 -1.4172 9 14 3.1304 1.8924 -2.8502 10 1 2.8680 3.3484 -2.9787 11 1 3.8659 1.4143 -4.0484 12 1 1.8405 1.1651 -2.7384 13 7 1.6271 2.1079 1.2429 14 6 2.3078 1.5191 2.4076 15 6 1.6260 2.0226 3.6812 16 7 1.5039 3.4771 3.6419 17 6 1.6044 4.1846 2.5117 18 8 1.4593 5.3876 2.5646 19 6 1.8894 3.5518 1.1792 20 1 2.9337 3.7185 0.9154 21 6 1.0032 4.1754 0.1318 22 8 0.2308 3.4881 -0.4932 23 8 1.0722 5.4946 -0.1067 24 6 0.1897 6.0265 -1.1297 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 5.8974 1.5773 -2.2807 31 1 2.2382 0.4324 2.3609 32 1 3.3552 1.8208 2.4099 33 1 0.6338 1.5784 3.7601 34 1 2.2210 1.7346 4.5479 35 1 1.3428 3.9511 4.4727 36 1 -0.8465 5.8328 -0.8522 37 1 0.3460 7.1014 -1.2214 38 1 0.4067 5.5448 -2.0830 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177322.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:15 Heat of formation + Delta-G solvation = -125.142982 kcal Electronic energy + Delta-G solvation = -22866.736266 eV Core-core repulsion = 19516.035495 eV Total energy + Delta-G solvation = -3350.700771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23050 -40.66799 -39.05244 -37.38077 -36.33277 -34.43145 -33.62916 -31.19847 -29.70640 -28.68853 -26.91501 -24.99128 -24.16257 -22.64292 -21.09505 -20.37337 -19.35213 -18.67710 -18.53787 -17.78891 -17.52427 -16.97588 -16.69843 -16.06398 -15.89440 -15.49882 -15.01040 -14.77842 -14.55478 -14.20667 -14.06396 -13.75507 -13.69899 -13.28230 -13.14200 -12.94408 -12.82166 -12.79389 -12.04956 -11.95054 -11.83096 -11.79709 -11.67224 -11.51845 -11.20092 -10.83274 -10.70463 -10.07372 -9.21108 -8.38459 -6.41196 0.94846 1.19046 1.25707 1.26790 1.37027 1.79064 2.23333 2.25456 2.85495 3.06354 3.48117 3.72368 4.00562 4.17246 4.23590 4.26255 4.31377 4.46060 4.54802 4.59388 4.65888 4.75353 4.88083 4.99391 5.12571 5.22613 5.29085 5.33351 5.44405 5.51498 5.66128 5.77778 5.89946 6.09762 6.19221 6.28525 6.67581 6.68840 7.08662 7.28555 8.76436 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.010298 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.373448 B = 2718.372878 C = 3384.453094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C 0.168 3.832 4 H 0.042 0.958 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.251 1.251 13 N -0.496 5.496 14 C 0.032 3.968 15 C 0.116 3.884 16 N -0.695 5.695 17 C 0.537 3.463 18 O -0.568 6.568 19 C 0.073 3.927 20 H 0.099 0.901 21 C 0.478 3.522 22 O -0.501 6.501 23 O -0.356 6.356 24 C 0.028 3.972 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.037 0.963 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.415 0.585 36 H 0.069 0.931 37 H 0.134 0.866 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 1.520 8.344 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.139 4.139 3 C 0.061 3.939 4 H 0.060 0.940 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.163 4.163 8 N -0.570 5.570 9 Si 0.731 3.269 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.175 1.175 13 N -0.222 5.222 14 C -0.096 4.096 15 C -0.007 4.007 16 N -0.347 5.347 17 C 0.321 3.679 18 O -0.447 6.447 19 C -0.040 4.040 20 H 0.116 0.884 21 C 0.320 3.680 22 O -0.389 6.389 23 O -0.271 6.271 24 C -0.065 4.065 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.152 0.848 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.582 1.762 7.905 13.326 hybrid contribution 0.959 0.471 -1.352 1.723 sum -9.623 2.233 6.553 11.854 Atomic orbital electron populations 1.21599 0.95383 1.00476 1.01267 1.21574 0.95479 0.96020 1.00870 1.19932 0.91838 0.93323 0.88797 0.93976 1.21901 0.92104 1.49690 0.94241 0.92027 1.25550 0.95199 0.94478 1.01092 1.69993 1.09978 1.51127 1.25883 0.86375 0.80546 0.78934 0.81077 1.20802 1.20787 1.17490 1.62906 1.56299 0.97392 1.05602 1.22612 0.96184 1.01951 0.88814 1.21878 1.03005 0.77664 0.98148 1.45345 1.71230 1.09459 1.08713 1.19272 0.76407 0.86472 0.85717 1.90763 1.51936 1.15219 1.86781 1.21118 0.99002 0.92534 0.91347 0.88358 1.22985 0.81455 0.81024 0.82565 1.90595 1.37098 1.62775 1.48412 1.86591 1.60751 1.24003 1.55781 1.23569 0.93331 1.01002 0.88632 0.92239 0.91774 0.95603 0.94324 0.91176 0.92507 0.86903 0.94448 0.88898 0.86205 0.74632 0.91270 0.84787 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.79 71.98 0.70 -3.68 16 2 C -0.10 -3.93 5.33 30.59 0.16 -3.76 16 3 C 0.17 7.44 1.02 44.17 0.04 7.49 16 4 H 0.04 2.08 2.96 -2.38 -0.01 2.07 16 5 C -0.54 -27.87 7.42 25.60 0.19 -27.68 16 6 H 0.06 3.37 6.27 -2.91 -0.02 3.36 16 7 C 0.04 2.06 5.47 84.66 0.46 2.52 16 8 N -0.93 -55.19 13.96 21.45 0.30 -54.89 16 9 Si 0.90 44.66 26.99 68.60 1.85 46.51 16 10 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.25 -12.04 6.82 99.48 0.68 -11.36 16 13 N -0.50 -18.69 3.55 -859.14 -3.05 -21.74 16 14 C 0.03 0.96 4.65 86.24 0.40 1.36 16 15 C 0.12 2.35 7.39 86.47 0.64 2.99 16 16 N -0.69 -17.42 5.52 -466.09 -2.57 -19.99 16 17 C 0.54 18.99 7.36 87.68 0.65 19.63 16 18 O -0.57 -22.90 16.49 13.20 0.22 -22.68 16 19 C 0.07 2.96 2.30 43.28 0.10 3.06 16 20 H 0.10 4.48 7.25 -2.39 -0.02 4.46 16 21 C 0.48 20.35 6.78 71.24 0.48 20.83 16 22 O -0.50 -22.43 14.16 21.99 0.31 -22.12 16 23 O -0.36 -14.03 9.54 -45.74 -0.44 -14.46 16 24 C 0.03 0.81 10.56 113.37 1.20 2.01 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 2.08 7.72 -2.39 -0.02 2.06 16 27 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.44 6.23 -2.39 -0.01 2.42 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.11 3.13 6.04 -2.39 -0.01 3.12 16 32 H 0.04 1.30 6.59 -2.39 -0.02 1.29 16 33 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.42 8.14 8.84 -92.71 -0.82 7.32 16 36 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 37 H 0.13 2.87 8.14 -2.38 -0.02 2.85 16 38 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 Total: -1.00 -70.12 304.65 1.89 -68.23 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.24 Total: 16.37 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 5.03 Total: 24.77 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -5.33 Total: -96.62 kcal Atomic # 8 Polarization: -59.36 SS G_CDS: 0.09 Total: -59.26 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.85 Total: 46.51 kcal Total: -70.12 1.89 -68.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177322.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.914 kcal (2) G-P(sol) polarization free energy of solvation -70.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds