Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.27290 * 2 1 4 4 C 1.54944 * 110.39301 * 237.85585 * 2 1 3 5 5 C 1.55302 * 100.94434 * 204.59792 * 4 2 1 6 6 H 1.09004 * 111.02107 * 275.86565 * 5 4 2 7 7 N 1.46500 * 110.85181 * 152.32512 * 5 4 2 8 8 C 1.34777 * 120.00376 * 160.71498 * 7 5 4 9 9 O 1.21352 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.49441 * 120.00194 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00052 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00194 * 179.97438 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.54380 * 102.25170 * 34.13246 * 5 4 2 24 24 O 1.43237 * 107.58891 * 338.64602 * 23 5 4 25 25 H 1.09002 * 109.46795 * 299.36027 * 1 2 3 26 26 H 1.09002 * 109.46677 * 59.35888 * 1 2 3 27 27 H 1.08998 * 109.47011 * 179.36081 * 1 2 3 28 28 H 1.09010 * 111.12553 * 86.67635 * 4 2 1 29 29 H 1.09000 * 111.12668 * 322.51684 * 4 2 1 30 30 H 0.97003 * 119.99983 * 340.71272 * 7 5 4 31 31 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 33 33 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 34 34 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 35 35 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 36 36 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.83020 * 98.16168 * 23 5 4 38 38 H 1.09004 * 109.83239 * 219.13270 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7727 -1.2297 5 6 3.4722 -1.2001 -0.7170 6 1 4.2014 -0.4031 -0.8625 7 7 3.9136 -2.4335 -1.3728 8 6 5.2201 -2.7644 -1.3768 9 8 6.0308 -2.0407 -0.8367 10 6 5.6702 -4.0229 -2.0452 11 8 4.8594 -4.7467 -2.5849 12 7 6.9768 -4.3534 -2.0497 13 6 7.4182 -5.5869 -2.7055 14 6 8.9356 -5.7239 -2.5659 15 6 9.3895 -6.9930 -3.2400 16 1 8.6679 -7.6372 -3.7203 17 6 10.7262 -7.3312 -3.2444 18 7 11.6049 -6.5465 -2.6600 19 14 11.2888 -8.9040 -4.0806 20 1 10.9261 -8.8566 -5.5199 21 1 12.7616 -9.0370 -3.9450 22 1 10.6261 -10.0690 -3.4412 23 6 3.2125 -1.4395 0.7859 24 8 2.0286 -0.7158 1.1412 25 1 -0.3633 0.5039 0.8957 26 1 -0.3633 0.5238 -0.8842 27 1 -0.3633 -1.0276 -0.0115 28 1 2.1516 -0.1201 -2.0990 29 1 1.4506 -1.6421 -1.4504 30 1 3.2654 -3.0122 -1.8041 31 1 7.6250 -3.7746 -1.6187 32 1 7.1517 -5.5521 -3.7619 33 1 6.9318 -6.4419 -2.2361 34 1 9.2016 -5.7588 -1.5095 35 1 9.4223 -4.8688 -3.0351 36 1 12.5452 -6.7846 -2.6628 37 1 3.0651 -2.5034 0.9708 38 1 4.0578 -1.0752 1.3698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261478884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = -129.445149 kcal Electronic energy + Delta-G solvation = -20077.381138 eV Core-core repulsion = 16726.493812 eV Total energy + Delta-G solvation = -3350.887327 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.79690 -39.70066 -38.21158 -35.52265 -34.69031 -32.88544 -32.53471 -30.48627 -29.81511 -26.47667 -25.75655 -23.92716 -21.87966 -21.57098 -20.97111 -20.19812 -18.42410 -17.45234 -16.84798 -16.44338 -16.03589 -15.73168 -15.44406 -14.94979 -14.55818 -14.36171 -14.13919 -14.01378 -13.50432 -13.13287 -13.00340 -12.85250 -12.34023 -12.28245 -11.98389 -11.72091 -11.50248 -11.31769 -11.26643 -11.06603 -10.70379 -10.41835 -9.89192 -9.84296 -9.52024 -9.47926 -9.25188 -8.74228 -8.43780 -6.11842 -4.15777 1.50586 2.36056 3.29358 3.31050 3.33695 3.35981 3.40956 3.76886 3.97288 4.33708 4.38486 4.47999 4.59958 4.70485 4.78987 4.91018 5.21668 5.23181 5.24959 5.29354 5.46753 5.50340 5.63141 5.75429 6.01563 6.14197 6.20295 6.54527 6.62730 6.65231 6.93115 7.42332 7.55109 7.58611 7.83665 7.85066 8.16968 8.29123 8.89549 9.49181 10.99583 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.062236 B = 0.002711 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.789444 B =10324.904567 C =10565.503523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 H 0.076 0.924 4 C -0.159 4.159 5 C 0.112 3.888 6 H 0.109 0.891 7 N -0.697 5.697 8 C 0.510 3.490 9 O -0.516 6.516 10 C 0.498 3.502 11 O -0.533 6.533 12 N -0.685 5.685 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.040 3.960 24 O -0.377 6.377 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.415 0.585 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.750 13.404 3.951 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.094 0.906 4 C -0.197 4.197 5 C 0.006 3.994 6 H 0.127 0.873 7 N -0.352 5.352 8 C 0.291 3.709 9 O -0.390 6.390 10 C 0.277 3.723 11 O -0.411 6.411 12 N -0.335 5.335 13 C -0.003 4.003 14 C -0.026 4.026 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.038 4.038 24 O -0.296 6.296 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.601 13.409 4.191 24.116 hybrid contribution 0.588 -0.843 -0.621 1.201 sum -19.013 12.566 3.570 23.068 Atomic orbital electron populations 1.21891 0.93282 1.03058 1.02635 1.22912 0.95269 0.95672 0.84179 0.90646 1.23615 0.94840 1.01928 0.99363 1.22589 0.96874 0.87671 0.92217 0.87331 1.45660 1.08277 1.24406 1.56890 1.20559 0.82942 0.86920 0.80467 1.90769 1.52812 1.51837 1.43610 1.19896 0.84323 0.86107 0.81985 1.90738 1.52937 1.52201 1.45178 1.46245 1.06768 1.25957 1.54560 1.21954 0.99144 0.82884 0.96332 1.19354 0.86841 0.98154 0.98283 1.20969 0.92829 1.06449 1.36083 0.92208 1.25004 0.96721 0.97185 0.95364 1.69947 1.02264 1.37400 1.43442 0.86548 0.77469 0.83329 0.80027 1.20094 1.21221 1.20092 1.23582 0.88143 0.97516 0.94566 1.88464 1.42336 1.65046 1.33741 0.91622 0.91045 0.91761 0.88793 0.89240 0.74764 0.75343 0.91807 0.91801 0.95645 0.95659 0.92688 0.90593 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.63 37.16 0.36 -0.51 16 2 C 0.08 0.55 4.07 -25.70 -0.10 0.45 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.16 -1.03 6.19 -24.48 -0.15 -1.18 16 5 C 0.11 1.02 3.28 -65.99 -0.22 0.80 16 6 H 0.11 1.05 7.71 -51.93 -0.40 0.65 16 7 N -0.70 -7.49 5.13 -52.36 -0.27 -7.76 16 8 C 0.51 7.24 7.89 -11.59 -0.09 7.15 16 9 O -0.52 -8.28 16.21 5.49 0.09 -8.19 16 10 C 0.50 8.27 7.89 -11.59 -0.09 8.18 16 11 O -0.53 -9.75 16.48 5.49 0.09 -9.66 16 12 N -0.68 -12.17 5.55 -60.73 -0.34 -12.50 16 13 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 14 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.04 0.40 7.55 37.88 0.29 0.68 16 24 O -0.38 -3.84 11.04 -35.23 -0.39 -4.23 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.09 0.53 7.91 -51.93 -0.41 0.12 16 30 H 0.42 3.97 7.98 -40.82 -0.33 3.65 16 31 H 0.41 6.96 7.94 -40.82 -0.32 6.63 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -31.24 327.37 -6.40 -37.64 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.65 Total: 3.83 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.59 Total: 5.04 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.13 Total: -45.50 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.21 Total: -22.08 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.24 -6.40 -37.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.801 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds