Wall clock time and date at job start Mon Mar 30 2020 02:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.27290 * 2 1 4 4 C 1.54944 * 110.39301 * 237.85585 * 2 1 3 5 5 C 1.55302 * 100.94434 * 204.59792 * 4 2 1 6 6 H 1.09004 * 111.02107 * 275.86565 * 5 4 2 7 7 N 1.46500 * 110.85181 * 152.32512 * 5 4 2 8 8 C 1.34777 * 120.00376 * 160.71498 * 7 5 4 9 9 O 1.21352 * 119.99754 * 0.02562 * 8 7 5 10 10 C 1.49441 * 120.00194 * 179.97438 * 8 7 5 11 11 O 1.21352 * 120.00052 * 0.02562 * 10 8 7 12 12 N 1.34777 * 120.00194 * 179.97438 * 10 8 7 13 13 C 1.46500 * 120.00376 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47473 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47294 * 60.00559 * 19 17 15 21 21 H 1.48503 * 109.46954 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47431 * 300.00157 * 19 17 15 23 23 C 1.54380 * 102.25170 * 34.13246 * 5 4 2 24 24 O 1.43237 * 107.58891 * 338.64602 * 23 5 4 25 25 H 1.09002 * 109.46795 * 299.36027 * 1 2 3 26 26 H 1.09002 * 109.46677 * 59.35888 * 1 2 3 27 27 H 1.08998 * 109.47011 * 179.36081 * 1 2 3 28 28 H 1.09010 * 111.12553 * 86.67635 * 4 2 1 29 29 H 1.09000 * 111.12668 * 322.51684 * 4 2 1 30 30 H 0.97003 * 119.99983 * 340.71272 * 7 5 4 31 31 H 0.97004 * 120.00228 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47129 * 59.99747 * 13 12 10 33 33 H 1.08998 * 109.46845 * 300.00553 * 13 12 10 34 34 H 1.09002 * 109.47153 * 59.99757 * 14 13 12 35 35 H 1.09001 * 109.46832 * 299.99948 * 14 13 12 36 36 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.83020 * 98.16168 * 23 5 4 38 38 H 1.09004 * 109.83239 * 219.13270 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0699 -0.7727 -1.2297 5 6 3.4722 -1.2001 -0.7170 6 1 4.2014 -0.4031 -0.8625 7 7 3.9136 -2.4335 -1.3728 8 6 5.2201 -2.7644 -1.3768 9 8 6.0308 -2.0407 -0.8367 10 6 5.6702 -4.0229 -2.0452 11 8 4.8594 -4.7467 -2.5849 12 7 6.9768 -4.3534 -2.0497 13 6 7.4182 -5.5869 -2.7055 14 6 8.9356 -5.7239 -2.5659 15 6 9.3895 -6.9930 -3.2400 16 1 8.6679 -7.6372 -3.7203 17 6 10.7262 -7.3312 -3.2444 18 7 11.6049 -6.5465 -2.6600 19 14 11.2888 -8.9040 -4.0806 20 1 10.9261 -8.8566 -5.5199 21 1 12.7616 -9.0370 -3.9450 22 1 10.6261 -10.0690 -3.4412 23 6 3.2125 -1.4395 0.7859 24 8 2.0286 -0.7158 1.1412 25 1 -0.3633 0.5039 0.8957 26 1 -0.3633 0.5238 -0.8842 27 1 -0.3633 -1.0276 -0.0115 28 1 2.1516 -0.1201 -2.0990 29 1 1.4506 -1.6421 -1.4504 30 1 3.2654 -3.0122 -1.8041 31 1 7.6250 -3.7746 -1.6187 32 1 7.1517 -5.5521 -3.7619 33 1 6.9318 -6.4419 -2.2361 34 1 9.2016 -5.7588 -1.5095 35 1 9.4223 -4.8688 -3.0351 36 1 12.5452 -6.7846 -2.6628 37 1 3.0651 -2.5034 0.9708 38 1 4.0578 -1.0752 1.3698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261478884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:14 Heat of formation + Delta-G solvation = -153.333286 kcal Electronic energy + Delta-G solvation = -20078.417006 eV Core-core repulsion = 16726.493812 eV Total energy + Delta-G solvation = -3351.923194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89909 -40.63768 -39.43598 -36.95014 -35.90952 -34.80693 -33.12450 -31.72670 -31.23525 -27.49413 -27.01188 -25.44101 -23.03141 -22.53396 -22.23376 -21.30104 -19.69348 -18.60628 -18.22145 -17.69153 -17.11084 -17.01837 -16.52093 -16.38597 -16.13199 -15.72732 -15.23295 -14.76248 -14.67837 -14.50806 -14.30303 -13.66704 -13.45827 -13.27150 -12.94329 -12.92935 -12.85486 -12.63110 -12.54961 -12.27570 -12.20652 -11.87295 -11.69190 -11.46233 -10.76267 -10.61518 -10.60477 -10.42734 -10.21711 -8.23639 -6.34960 0.25660 1.20943 1.43519 1.45572 1.53673 2.05576 2.38286 2.54242 2.85072 3.11338 3.26124 3.41265 3.71492 3.85124 3.95858 4.17874 4.37852 4.41241 4.44694 4.57489 4.66650 4.76284 4.79929 4.80797 4.89390 5.05849 5.07026 5.18783 5.32162 5.41654 5.54432 5.74434 5.86366 5.97407 6.12416 6.31208 6.64782 6.78629 6.88315 7.34624 8.88155 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.062236 B = 0.002711 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.789444 B =10324.904567 C =10565.503523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.085 0.915 4 C -0.148 4.148 5 C 0.110 3.890 6 H 0.106 0.894 7 N -0.677 5.677 8 C 0.518 3.482 9 O -0.536 6.536 10 C 0.501 3.499 11 O -0.547 6.547 12 N -0.688 5.688 13 C 0.138 3.862 14 C 0.018 3.982 15 C -0.546 4.546 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.284 1.284 22 H -0.267 1.267 23 C 0.041 3.959 24 O -0.396 6.396 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.423 0.577 31 H 0.415 0.585 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.282 13.500 3.125 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.012 3.988 3 H 0.103 0.897 4 C -0.186 4.186 5 C 0.005 3.995 6 H 0.124 0.876 7 N -0.332 5.332 8 C 0.298 3.702 9 O -0.413 6.413 10 C 0.281 3.719 11 O -0.426 6.426 12 N -0.339 5.339 13 C 0.015 3.985 14 C -0.019 4.019 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.792 3.208 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.037 4.037 24 O -0.315 6.315 25 H 0.080 0.920 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.262 0.738 31 H 0.251 0.749 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.191 13.522 3.364 25.362 hybrid contribution 0.982 -0.808 -0.326 1.313 sum -20.209 12.714 3.038 24.068 Atomic orbital electron populations 1.21903 0.92089 1.03115 1.03510 1.23171 0.96243 0.95901 0.83463 0.89730 1.23628 0.92706 1.02540 0.99691 1.22731 0.98418 0.86501 0.91864 0.87590 1.45595 1.07010 1.24840 1.55738 1.20018 0.83961 0.85796 0.80393 1.90774 1.53611 1.52138 1.44753 1.20259 0.83483 0.86731 0.81387 1.90727 1.53153 1.52958 1.45740 1.46076 1.07655 1.25306 1.54855 1.21487 0.96335 0.84134 0.96531 1.19176 0.89450 0.96712 0.96582 1.21427 0.93355 1.07442 1.36176 0.91648 1.25926 0.96907 1.00629 0.95983 1.70070 1.02609 1.39324 1.44774 0.85457 0.76968 0.79163 0.79206 1.19134 1.20916 1.19194 1.23489 0.88053 0.97201 0.94936 1.88453 1.42258 1.65389 1.35442 0.91993 0.88932 0.92133 0.86676 0.88312 0.73803 0.74893 0.91882 0.91977 0.97451 0.97392 0.92567 0.91150 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.63 71.98 0.69 -0.68 16 2 C 0.07 0.85 4.07 31.26 0.13 0.98 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.15 -1.52 6.19 32.05 0.20 -1.32 16 5 C 0.11 1.81 3.28 46.25 0.15 1.96 16 6 H 0.11 1.88 7.71 -2.39 -0.02 1.86 16 7 N -0.68 -13.46 5.13 -437.92 -2.25 -15.71 16 8 C 0.52 14.21 7.89 87.27 0.69 14.90 16 9 O -0.54 -16.91 16.21 -3.25 -0.05 -16.96 16 10 C 0.50 16.28 7.89 87.27 0.69 16.97 16 11 O -0.55 -19.42 16.48 -3.25 -0.05 -19.47 16 12 N -0.69 -24.41 5.55 -464.42 -2.58 -26.98 16 13 C 0.14 5.67 5.61 86.38 0.48 6.15 16 14 C 0.02 0.92 5.09 29.85 0.15 1.07 16 15 C -0.55 -29.89 9.11 25.60 0.23 -29.65 16 16 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -54.68 13.29 21.45 0.28 -54.39 16 19 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 C 0.04 0.79 7.55 72.45 0.55 1.33 16 24 O -0.40 -7.65 11.04 -148.98 -1.64 -9.30 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.10 0.87 7.91 -2.39 -0.02 0.85 16 30 H 0.42 7.22 7.98 -92.71 -0.74 6.48 16 31 H 0.41 14.19 7.94 -92.71 -0.74 13.46 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.07 1.40 8.02 -2.39 -0.02 1.38 16 38 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -66.22 327.37 -0.24 -66.45 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -0.40 Total: 18.82 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 4.43 Total: 12.42 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -4.54 Total: -97.08 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -1.75 Total: -45.73 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.22 -0.24 -66.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.880 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds