Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.55243 * 2 1 4 4 C 1.55352 * 110.58323 * 123.05888 * 2 1 3 5 5 C 1.54816 * 101.93019 * 155.54362 * 4 2 1 6 6 H 1.09005 * 110.48270 * 220.33708 * 5 4 2 7 7 N 1.46496 * 110.48469 * 97.82387 * 5 4 2 8 8 C 1.34777 * 119.99610 * 156.84499 * 7 5 4 9 9 O 1.21346 * 119.99972 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99994 * 179.97438 * 8 7 5 11 11 O 1.21355 * 119.99792 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99994 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99610 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46847 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.54100 * 104.30625 * 339.07752 * 5 4 2 24 24 O 1.43749 * 107.29127 * 358.03922 * 23 5 4 25 25 H 1.08999 * 109.47233 * 181.42156 * 1 2 3 26 26 H 1.09000 * 109.46721 * 301.42738 * 1 2 3 27 27 H 1.09000 * 109.46530 * 61.42085 * 1 2 3 28 28 H 1.09000 * 110.96017 * 37.40811 * 4 2 1 29 29 H 1.08996 * 111.00273 * 273.69780 * 4 2 1 30 30 H 0.96996 * 120.00503 * 336.84134 * 7 5 4 31 31 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 32 32 H 1.09000 * 109.47627 * 59.99917 * 13 12 10 33 33 H 1.09002 * 109.46983 * 299.99313 * 13 12 10 34 34 H 1.09001 * 109.47671 * 59.99931 * 14 13 12 35 35 H 1.09006 * 109.47297 * 299.99651 * 14 13 12 36 36 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 37 37 H 1.08997 * 109.87411 * 117.46195 * 23 5 4 38 38 H 1.08990 * 109.87926 * 238.46466 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0762 -0.7933 1.2189 5 6 3.4795 -1.2179 0.7217 6 1 3.6997 -2.2404 1.0286 7 7 4.5025 -0.3001 1.2287 8 6 5.7836 -0.7069 1.3273 9 8 6.0896 -1.8336 0.9965 10 6 6.8275 0.2296 1.8441 11 8 6.5215 1.3566 2.1745 12 7 8.1085 -0.1774 1.9431 13 6 9.1315 0.7405 2.4502 14 6 10.4891 0.0351 2.4615 15 6 11.5416 0.9794 2.9825 16 1 11.2695 1.9826 3.2759 17 6 12.8519 0.5628 3.0848 18 7 13.1834 -0.6586 2.7271 19 14 14.1566 1.7336 3.7299 20 1 15.4741 1.0485 3.7422 21 1 14.2277 2.9285 2.8511 22 1 13.8053 2.1544 5.1101 23 6 3.3840 -1.1243 -0.8135 24 8 2.0384 -0.7336 -1.1348 25 1 -0.3633 -1.0273 0.0255 26 1 -0.3633 0.5359 0.8769 27 1 -0.3632 0.4916 -0.9025 28 1 1.4564 -1.6658 1.4258 29 1 2.1521 -0.1544 2.0987 30 1 4.2579 0.6005 1.4935 31 1 8.3529 -1.0782 1.6794 32 1 8.8737 1.0479 3.4637 33 1 9.1832 1.6184 1.8062 34 1 10.7472 -0.2727 1.4482 35 1 10.4371 -0.8427 3.1057 36 1 12.5059 -1.2665 2.3918 37 1 4.0854 -0.3766 -1.1836 38 1 3.6070 -2.0939 -1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261478886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -132.609416 kcal Electronic energy + Delta-G solvation = -20181.714796 eV Core-core repulsion = 16830.690256 eV Total energy + Delta-G solvation = -3351.024539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88376 -39.71486 -38.25350 -35.59835 -34.77121 -33.13416 -32.49824 -30.51811 -29.63052 -26.51348 -25.53736 -23.71663 -21.97852 -21.57386 -21.25950 -20.42805 -18.55134 -17.41593 -16.84768 -16.37814 -16.04649 -15.93467 -15.47920 -15.21728 -15.04833 -14.34608 -13.89534 -13.72091 -13.45706 -13.21107 -12.99184 -12.68415 -12.42129 -12.30966 -12.08281 -11.78739 -11.71291 -11.55820 -11.19954 -11.05072 -10.52584 -10.24874 -10.09083 -10.04772 -9.60035 -9.53675 -8.82722 -8.74000 -8.42441 -6.47528 -4.18616 1.44528 2.33327 3.25564 3.40541 3.42323 3.42415 3.61243 3.72733 3.99827 4.23679 4.46489 4.48490 4.61050 4.67440 4.77121 4.92010 5.14479 5.20306 5.30595 5.31995 5.44782 5.49136 5.58247 5.71158 5.95108 5.98138 6.06886 6.43068 6.48836 6.51075 6.86427 7.14725 7.26373 7.49280 7.75680 7.99503 8.17438 8.33097 8.75042 9.53722 10.93530 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057196 B = 0.002783 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.425794 B =10057.063007 C =10304.968475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.110 0.890 7 N -0.699 5.699 8 C 0.510 3.490 9 O -0.517 6.517 10 C 0.498 3.502 11 O -0.531 6.531 12 N -0.687 5.687 13 C 0.126 3.874 14 C -0.002 4.002 15 C -0.605 4.605 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.908 5.908 19 Si 1.072 2.928 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.287 1.287 23 C 0.037 3.963 24 O -0.371 6.371 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.414 0.586 31 H 0.410 0.590 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.046 -0.409 -4.057 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.091 0.909 4 C -0.196 4.196 5 C 0.004 3.996 6 H 0.128 0.872 7 N -0.355 5.355 8 C 0.291 3.709 9 O -0.391 6.391 10 C 0.277 3.723 11 O -0.409 6.409 12 N -0.338 5.338 13 C 0.004 3.996 14 C -0.040 4.040 15 C -0.643 4.643 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.543 5.543 19 Si 0.900 3.100 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.041 4.041 24 O -0.291 6.291 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.250 0.750 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.501 -0.341 -3.905 22.840 hybrid contribution -1.488 -0.104 -0.186 1.503 sum -23.989 -0.445 -4.091 24.339 Atomic orbital electron populations 1.21776 0.92770 1.03074 1.02727 1.23266 0.95580 0.95448 0.84670 0.90906 1.23572 0.94690 1.02051 0.99253 1.22413 0.87436 0.95757 0.94033 0.87230 1.45837 1.06793 1.17626 1.65198 1.20504 0.83852 0.87778 0.78717 1.90763 1.81059 1.19864 1.47443 1.19938 0.84194 0.87494 0.80654 1.90741 1.81221 1.19794 1.49113 1.46238 1.06900 1.18408 1.62272 1.21784 0.87112 0.92170 0.98491 1.19487 0.90412 0.96803 0.97259 1.21845 0.94360 1.00067 1.48047 0.92782 1.25904 0.98804 0.98837 0.95130 1.70800 1.37702 1.05868 1.39964 0.83494 0.75684 0.74595 0.76260 1.20693 1.21288 1.21300 1.23656 0.84655 1.01686 0.94080 1.88920 1.27607 1.73650 1.38879 0.91648 0.90928 0.91640 0.88601 0.89010 0.74963 0.75461 0.91640 0.91630 0.96551 0.96556 0.92057 0.91565 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.66 37.16 0.36 -0.47 16 2 C 0.07 0.50 3.98 -25.48 -0.10 0.40 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.16 -1.02 6.24 -24.53 -0.15 -1.18 16 5 C 0.11 0.98 3.36 -66.40 -0.22 0.75 16 6 H 0.11 1.05 7.61 -51.93 -0.40 0.65 16 7 N -0.70 -7.46 4.99 -52.75 -0.26 -7.72 16 8 C 0.51 7.21 7.89 -11.58 -0.09 7.11 16 9 O -0.52 -8.22 16.16 5.50 0.09 -8.13 16 10 C 0.50 8.27 7.89 -11.58 -0.09 8.18 16 11 O -0.53 -9.73 16.48 5.49 0.09 -9.64 16 12 N -0.69 -12.20 5.55 -60.73 -0.34 -12.54 16 13 C 0.13 2.62 5.61 -4.04 -0.02 2.59 16 14 C 0.00 -0.05 4.40 -27.88 -0.12 -0.18 16 15 C -0.60 -16.76 9.11 -34.44 -0.31 -17.07 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -27.20 13.65 55.43 0.76 -26.45 16 19 Si 1.07 24.78 29.90 -169.99 -5.08 19.70 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.04 0.36 7.51 37.73 0.28 0.64 16 24 O -0.37 -3.74 11.22 -35.23 -0.40 -4.14 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.53 8.06 -51.93 -0.42 0.11 16 29 H 0.09 0.50 7.98 -51.93 -0.41 0.09 16 30 H 0.41 3.94 8.03 -40.82 -0.33 3.61 16 31 H 0.41 6.88 7.94 -40.82 -0.32 6.55 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 35 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 36 H 0.27 7.97 7.22 -40.82 -0.29 7.68 16 37 H 0.07 0.69 7.93 -51.93 -0.41 0.28 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -32.10 325.91 -6.39 -38.49 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.58 Total: 4.33 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.57 Total: 1.18 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.16 Total: -46.70 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.22 Total: -21.90 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.08 Total: 19.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.10 -6.39 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.122 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds