Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.55243 * 2 1 4 4 C 1.55352 * 110.58323 * 123.05888 * 2 1 3 5 5 C 1.54816 * 101.93019 * 155.54362 * 4 2 1 6 6 H 1.09005 * 110.48270 * 220.33708 * 5 4 2 7 7 N 1.46496 * 110.48469 * 97.82387 * 5 4 2 8 8 C 1.34777 * 119.99610 * 156.84499 * 7 5 4 9 9 O 1.21346 * 119.99972 * 359.97438 * 8 7 5 10 10 C 1.49456 * 119.99994 * 179.97438 * 8 7 5 11 11 O 1.21355 * 119.99792 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99994 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99610 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.46847 * 179.97438 * 13 12 10 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47389 * 300.00068 * 19 17 15 22 22 H 1.48504 * 109.47102 * 60.00417 * 19 17 15 23 23 C 1.54100 * 104.30625 * 339.07752 * 5 4 2 24 24 O 1.43749 * 107.29127 * 358.03922 * 23 5 4 25 25 H 1.08999 * 109.47233 * 181.42156 * 1 2 3 26 26 H 1.09000 * 109.46721 * 301.42738 * 1 2 3 27 27 H 1.09000 * 109.46530 * 61.42085 * 1 2 3 28 28 H 1.09000 * 110.96017 * 37.40811 * 4 2 1 29 29 H 1.08996 * 111.00273 * 273.69780 * 4 2 1 30 30 H 0.96996 * 120.00503 * 336.84134 * 7 5 4 31 31 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 32 32 H 1.09000 * 109.47627 * 59.99917 * 13 12 10 33 33 H 1.09002 * 109.46983 * 299.99313 * 13 12 10 34 34 H 1.09001 * 109.47671 * 59.99931 * 14 13 12 35 35 H 1.09006 * 109.47297 * 299.99651 * 14 13 12 36 36 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 37 37 H 1.08997 * 109.87411 * 117.46195 * 23 5 4 38 38 H 1.08990 * 109.87926 * 238.46466 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0762 -0.7933 1.2189 5 6 3.4795 -1.2179 0.7217 6 1 3.6997 -2.2404 1.0286 7 7 4.5025 -0.3001 1.2287 8 6 5.7836 -0.7069 1.3273 9 8 6.0896 -1.8336 0.9965 10 6 6.8275 0.2296 1.8441 11 8 6.5215 1.3566 2.1745 12 7 8.1085 -0.1774 1.9431 13 6 9.1315 0.7405 2.4502 14 6 10.4891 0.0351 2.4615 15 6 11.5416 0.9794 2.9825 16 1 11.2695 1.9826 3.2759 17 6 12.8519 0.5628 3.0848 18 7 13.1834 -0.6586 2.7271 19 14 14.1566 1.7336 3.7299 20 1 15.4741 1.0485 3.7422 21 1 14.2277 2.9285 2.8511 22 1 13.8053 2.1544 5.1101 23 6 3.3840 -1.1243 -0.8135 24 8 2.0384 -0.7336 -1.1348 25 1 -0.3633 -1.0273 0.0255 26 1 -0.3633 0.5359 0.8769 27 1 -0.3632 0.4916 -0.9025 28 1 1.4564 -1.6658 1.4258 29 1 2.1521 -0.1544 2.0987 30 1 4.2579 0.6005 1.4935 31 1 8.3529 -1.0782 1.6794 32 1 8.8737 1.0479 3.4637 33 1 9.1832 1.6184 1.8062 34 1 10.7472 -0.2727 1.4482 35 1 10.4371 -0.8427 3.1057 36 1 12.5059 -1.2665 2.3918 37 1 4.0854 -0.3766 -1.1836 38 1 3.6070 -2.0939 -1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261478886.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = -157.217733 kcal Electronic energy + Delta-G solvation = -20182.781892 eV Core-core repulsion = 16830.690256 eV Total energy + Delta-G solvation = -3352.091636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.97903 -40.67336 -39.45847 -37.12756 -35.95489 -35.01586 -33.07967 -31.58163 -31.21982 -27.24489 -27.02073 -25.37230 -23.34678 -22.59605 -22.12303 -21.65148 -19.86719 -18.82385 -18.33073 -17.47051 -17.22237 -16.87067 -16.55966 -16.31442 -16.00957 -15.74523 -15.62578 -15.23700 -14.68473 -14.27701 -14.04614 -13.72905 -13.64492 -13.28676 -13.04305 -12.93149 -12.90639 -12.67812 -12.32467 -12.27066 -12.14569 -11.88473 -11.79618 -11.04118 -10.78185 -10.68896 -10.60220 -10.49293 -10.32584 -8.72550 -6.44532 0.19814 1.16798 1.55520 1.62962 1.82514 1.99628 2.46487 2.59752 2.83189 3.13134 3.27597 3.38199 3.64199 3.81966 4.04904 4.13621 4.19095 4.27646 4.38970 4.59794 4.61078 4.62395 4.68778 4.83663 4.90576 4.91229 5.05561 5.11158 5.21229 5.27629 5.29122 5.78390 5.83369 5.89072 6.12726 6.22604 6.50507 6.60620 6.80555 7.36552 8.69461 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.057196 B = 0.002783 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.425794 B =10057.063007 C =10304.968475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.075 0.925 4 C -0.146 4.146 5 C 0.106 3.894 6 H 0.108 0.892 7 N -0.680 5.680 8 C 0.518 3.482 9 O -0.536 6.536 10 C 0.501 3.499 11 O -0.546 6.546 12 N -0.690 5.690 13 C 0.145 3.855 14 C 0.002 3.998 15 C -0.621 4.621 16 H 0.057 0.943 17 C -0.034 4.034 18 N -0.934 5.934 19 Si 1.119 2.881 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.268 1.268 23 C 0.038 3.962 24 O -0.389 6.389 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.421 0.579 31 H 0.415 0.585 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.004 0.996 35 H 0.005 0.995 36 H 0.258 0.742 37 H 0.055 0.945 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.493 0.444 -3.476 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.003 3.997 3 H 0.093 0.907 4 C -0.184 4.184 5 C 0.002 3.998 6 H 0.126 0.874 7 N -0.334 5.334 8 C 0.299 3.701 9 O -0.413 6.413 10 C 0.281 3.719 11 O -0.425 6.425 12 N -0.341 5.341 13 C 0.022 3.978 14 C -0.035 4.035 15 C -0.659 4.659 16 H 0.075 0.925 17 C -0.232 4.232 18 N -0.571 5.571 19 Si 0.940 3.060 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.040 4.040 24 O -0.309 6.309 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.079 0.921 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.259 0.741 31 H 0.251 0.749 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.021 0.523 -3.333 24.257 hybrid contribution -1.152 -0.361 -0.405 1.273 sum -25.173 0.162 -3.738 25.450 Atomic orbital electron populations 1.21792 0.91434 1.03428 1.03436 1.23497 0.96689 0.95394 0.84152 0.90692 1.23583 0.92733 1.02796 0.99307 1.22572 0.88144 0.95283 0.93788 0.87430 1.45802 1.05796 1.18219 1.63612 1.19952 0.84327 0.86903 0.78943 1.90768 1.81405 1.20360 1.48741 1.20333 0.84103 0.87638 0.79803 1.90730 1.81472 1.20632 1.49617 1.46051 1.07075 1.18236 1.62737 1.21314 0.86122 0.91920 0.98428 1.19349 0.92022 0.96185 0.95968 1.22289 0.95365 1.00689 1.47605 0.92518 1.27423 1.01604 0.99484 0.94739 1.70924 1.37505 1.06826 1.41835 0.82905 0.72968 0.73197 0.76954 1.20970 1.19365 1.19320 1.23595 0.84593 1.01411 0.94407 1.88914 1.27546 1.74080 1.40346 0.91538 0.88991 0.92127 0.87101 0.87409 0.74054 0.74898 0.91927 0.92018 0.97730 0.97662 0.93264 0.92682 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.66 71.98 0.70 -0.61 16 2 C 0.06 0.75 3.98 31.41 0.13 0.88 16 3 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.15 -1.51 6.24 32.02 0.20 -1.31 16 5 C 0.11 1.72 3.36 45.98 0.15 1.88 16 6 H 0.11 1.87 7.61 -2.38 -0.02 1.85 16 7 N -0.68 -13.36 4.99 -439.17 -2.19 -15.55 16 8 C 0.52 14.08 7.89 87.27 0.69 14.76 16 9 O -0.54 -16.63 16.16 -3.23 -0.05 -16.69 16 10 C 0.50 16.21 7.89 87.27 0.69 16.90 16 11 O -0.55 -19.39 16.48 -3.26 -0.05 -19.44 16 12 N -0.69 -24.32 5.55 -464.41 -2.58 -26.90 16 13 C 0.14 6.01 5.61 86.38 0.48 6.49 16 14 C 0.00 0.11 4.40 29.85 0.13 0.24 16 15 C -0.62 -34.48 9.11 25.60 0.23 -34.24 16 16 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 17 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 18 N -0.93 -56.63 13.65 21.45 0.29 -56.33 16 19 Si 1.12 49.11 29.90 68.60 2.05 51.16 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 C 0.04 0.70 7.51 72.35 0.54 1.24 16 24 O -0.39 -7.37 11.22 -148.98 -1.67 -9.04 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.11 0.88 8.06 -2.39 -0.02 0.86 16 29 H 0.11 0.81 7.98 -2.39 -0.02 0.79 16 30 H 0.42 7.16 8.03 -92.71 -0.74 6.41 16 31 H 0.41 13.95 7.94 -92.71 -0.74 13.21 16 32 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 35 H 0.01 0.26 8.01 -2.38 -0.02 0.25 16 36 H 0.26 15.68 7.22 -92.71 -0.67 15.01 16 37 H 0.05 1.12 7.93 -2.39 -0.02 1.10 16 38 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.03 325.91 -0.10 -68.13 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -0.30 Total: 19.91 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 4.41 Total: 4.75 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -4.48 Total: -98.79 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.78 Total: -45.17 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.05 Total: 51.16 kcal Total: -68.03 -0.10 -68.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478886.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.085 kcal (2) G-P(sol) polarization free energy of solvation -68.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds