Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.87021 * 2 1 4 4 C 1.54100 * 109.87344 * 238.99130 * 2 1 3 5 5 C 1.54808 * 104.18579 * 238.54539 * 4 2 1 6 6 H 1.08997 * 110.90515 * 97.35791 * 5 4 2 7 7 N 1.46504 * 110.90733 * 220.92213 * 5 4 2 8 8 C 1.34774 * 120.00240 * 205.00140 * 7 5 4 9 9 O 1.21346 * 120.00058 * 0.02562 * 8 7 5 10 10 C 1.49445 * 119.99983 * 180.02562 * 8 7 5 11 11 O 1.21350 * 120.00610 * 359.97438 * 10 8 7 12 12 N 1.34784 * 119.99981 * 180.02562 * 10 8 7 13 13 C 1.46499 * 119.99897 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.54991 * 102.09539 * 339.12104 * 5 4 2 24 24 O 1.43742 * 109.87655 * 121.16209 * 2 1 3 25 25 H 1.08998 * 109.47100 * 181.00982 * 1 2 3 26 26 H 1.09004 * 109.46597 * 301.00884 * 1 2 3 27 27 H 1.08997 * 109.47167 * 61.00210 * 1 2 3 28 28 H 1.09004 * 110.48478 * 119.87429 * 4 2 1 29 29 H 1.08994 * 110.49238 * 357.22994 * 4 2 1 30 30 H 0.97005 * 119.99919 * 25.00374 * 7 5 4 31 31 H 0.96991 * 119.99637 * 359.97438 * 12 10 8 32 32 H 1.09002 * 109.47239 * 59.99631 * 13 12 10 33 33 H 1.08998 * 109.47134 * 299.99061 * 13 12 10 34 34 H 1.09007 * 109.46922 * 59.99533 * 14 13 12 35 35 H 1.09003 * 109.46836 * 300.00289 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.61786 * 155.51886 * 23 5 4 38 38 H 1.08996 * 110.62043 * 278.52607 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0539 -0.7466 -1.2421 5 6 2.9194 -1.8906 -0.6601 6 1 2.3540 -2.8213 -0.6143 7 7 4.1474 -2.0657 -1.4398 8 6 4.7752 -3.2582 -1.4495 9 8 4.3232 -4.1871 -0.8128 10 6 6.0281 -3.4366 -2.2444 11 8 6.4800 -2.5079 -2.8815 12 7 6.6558 -4.6293 -2.2545 13 6 7.8836 -4.8043 -3.0341 14 6 8.3890 -6.2396 -2.8743 15 6 9.6517 -6.4198 -3.6768 16 1 10.0539 -5.5932 -4.2438 17 6 10.2937 -7.6400 -3.6872 18 7 9.8043 -8.6464 -2.9964 19 14 11.8586 -7.8635 -4.6825 20 1 11.5125 -8.3137 -6.0547 21 1 12.5882 -6.5722 -4.7545 22 1 12.7191 -8.8826 -4.0296 23 6 3.2379 -1.3652 0.7628 24 8 2.0188 -0.6995 1.1567 25 1 -0.3633 -1.0275 0.0181 26 1 -0.3633 0.5295 0.8809 27 1 -0.3633 0.4982 -0.8988 28 1 2.6619 -0.0834 -1.8576 29 1 1.2246 -1.1523 -1.8214 30 1 4.5086 -1.3232 -1.9490 31 1 6.2944 -5.3717 -1.7456 32 1 8.6436 -4.1098 -2.6759 33 1 7.6774 -4.6065 -4.0860 34 1 7.6291 -6.9343 -3.2323 35 1 8.5952 -6.4371 -1.8224 36 1 10.2558 -9.5050 -3.0041 37 1 3.4584 -2.1928 1.4371 38 1 4.0685 -0.6599 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261478887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -129.452349 kcal Electronic energy + Delta-G solvation = -20076.268892 eV Core-core repulsion = 16725.381253 eV Total energy + Delta-G solvation = -3350.887639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78542 -39.71249 -38.21047 -35.51748 -34.68316 -32.88597 -32.55065 -30.41254 -29.80979 -26.38172 -25.74867 -23.94133 -22.06184 -21.35818 -21.06993 -20.35405 -18.43680 -17.33605 -16.60715 -16.25691 -15.92524 -15.80913 -15.61749 -14.93909 -14.72000 -14.46084 -14.32557 -13.87365 -13.52588 -13.07373 -12.87943 -12.74590 -12.45229 -12.34063 -11.92882 -11.67379 -11.43221 -11.26766 -11.21526 -11.08185 -10.68654 -10.42738 -10.17079 -9.83850 -9.49945 -9.42493 -9.24169 -8.74248 -8.44131 -6.12124 -4.15932 1.51200 2.36637 3.27646 3.32202 3.34006 3.37393 3.47613 3.81724 4.05347 4.29156 4.38365 4.49750 4.61885 4.69474 4.80062 4.93641 5.16850 5.24686 5.24793 5.31543 5.48061 5.52524 5.58684 5.76797 5.98464 6.14136 6.20274 6.50564 6.54764 6.65273 6.93736 7.42617 7.55049 7.59223 7.84188 7.85119 8.17024 8.29198 8.89660 9.49083 10.99348 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.063190 B = 0.002702 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.999402 B =10360.181833 C =10566.798394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.073 3.927 3 H 0.072 0.928 4 C -0.161 4.161 5 C 0.111 3.889 6 H 0.112 0.888 7 N -0.697 5.697 8 C 0.510 3.490 9 O -0.516 6.516 10 C 0.498 3.502 11 O -0.533 6.533 12 N -0.685 5.685 13 C 0.118 3.882 14 C 0.011 3.989 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.272 1.272 22 H -0.286 1.286 23 C 0.036 3.964 24 O -0.369 6.369 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.414 0.586 31 H 0.411 0.589 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.102 0.898 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 16.401 4.962 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.015 3.985 3 H 0.090 0.910 4 C -0.199 4.199 5 C 0.005 3.995 6 H 0.130 0.870 7 N -0.353 5.353 8 C 0.291 3.709 9 O -0.390 6.390 10 C 0.277 3.723 11 O -0.411 6.411 12 N -0.335 5.335 13 C -0.003 4.003 14 C -0.027 4.027 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.197 1.197 22 H -0.211 1.211 23 C -0.042 4.042 24 O -0.287 6.287 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.251 0.749 31 H 0.247 0.753 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.929 16.174 5.217 23.988 hybrid contribution 0.977 -0.231 -0.731 1.242 sum -15.952 15.943 4.486 22.995 Atomic orbital electron populations 1.21954 0.93400 1.03101 1.02524 1.22706 0.95472 0.95860 0.84484 0.91003 1.23310 1.00645 0.97261 0.98675 1.22620 0.85450 1.00470 0.90913 0.87033 1.45671 1.25968 1.13616 1.50016 1.20547 0.85400 0.83035 0.81890 1.90769 1.65861 1.40076 1.42304 1.19910 0.84952 0.84497 0.82959 1.90735 1.66518 1.40308 1.43540 1.46246 1.26979 1.11868 1.48443 1.21952 0.82562 1.01556 0.94239 1.19360 0.96708 0.88308 0.98297 1.21007 1.08628 0.97073 1.29543 0.92157 1.25010 0.97858 0.95883 0.95553 1.69960 1.39990 1.02232 1.40864 0.86490 0.82838 0.78020 0.80061 1.20538 1.19725 1.21142 1.23979 0.87819 0.96998 0.95355 1.88943 1.39550 1.67452 1.32776 0.91657 0.91750 0.91128 0.89604 0.89116 0.74878 0.75340 0.91803 0.91812 0.95656 0.95635 0.92746 0.87999 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.36 37.16 0.35 -0.56 16 2 C 0.07 0.52 4.06 -26.15 -0.11 0.42 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.16 -1.07 6.39 -25.20 -0.16 -1.23 16 5 C 0.11 1.02 3.50 -65.92 -0.23 0.79 16 6 H 0.11 1.16 7.54 -51.93 -0.39 0.77 16 7 N -0.70 -7.42 5.18 -52.30 -0.27 -7.70 16 8 C 0.51 7.23 7.89 -11.59 -0.09 7.14 16 9 O -0.52 -8.31 16.12 5.50 0.09 -8.23 16 10 C 0.50 8.24 7.89 -11.58 -0.09 8.15 16 11 O -0.53 -9.71 16.48 5.50 0.09 -9.62 16 12 N -0.68 -12.15 5.55 -60.73 -0.34 -12.48 16 13 C 0.12 2.43 5.61 -4.04 -0.02 2.41 16 14 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 15 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.04 0.34 7.41 38.21 0.28 0.63 16 24 O -0.37 -3.70 11.19 -35.23 -0.39 -4.09 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.47 7.77 -51.93 -0.40 0.06 16 29 H 0.09 0.53 7.70 -51.93 -0.40 0.13 16 30 H 0.41 3.87 7.88 -40.82 -0.32 3.55 16 31 H 0.41 6.96 7.94 -40.82 -0.32 6.63 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 326.72 15.07 4.92 4.92 Total: -1.00 -31.20 326.72 -6.42 -37.62 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.61 Total: 3.86 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.63 Total: 4.82 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.13 Total: -45.41 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.21 Total: -21.93 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.20 -6.42 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.832 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds