Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.87021 * 2 1 4 4 C 1.54100 * 109.87344 * 238.99130 * 2 1 3 5 5 C 1.54808 * 104.18579 * 238.54539 * 4 2 1 6 6 H 1.08997 * 110.90515 * 97.35791 * 5 4 2 7 7 N 1.46504 * 110.90733 * 220.92213 * 5 4 2 8 8 C 1.34774 * 120.00240 * 205.00140 * 7 5 4 9 9 O 1.21346 * 120.00058 * 0.02562 * 8 7 5 10 10 C 1.49445 * 119.99983 * 180.02562 * 8 7 5 11 11 O 1.21350 * 120.00610 * 359.97438 * 10 8 7 12 12 N 1.34784 * 119.99981 * 180.02562 * 10 8 7 13 13 C 1.46499 * 119.99897 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47073 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.54991 * 102.09539 * 339.12104 * 5 4 2 24 24 O 1.43742 * 109.87655 * 121.16209 * 2 1 3 25 25 H 1.08998 * 109.47100 * 181.00982 * 1 2 3 26 26 H 1.09004 * 109.46597 * 301.00884 * 1 2 3 27 27 H 1.08997 * 109.47167 * 61.00210 * 1 2 3 28 28 H 1.09004 * 110.48478 * 119.87429 * 4 2 1 29 29 H 1.08994 * 110.49238 * 357.22994 * 4 2 1 30 30 H 0.97005 * 119.99919 * 25.00374 * 7 5 4 31 31 H 0.96991 * 119.99637 * 359.97438 * 12 10 8 32 32 H 1.09002 * 109.47239 * 59.99631 * 13 12 10 33 33 H 1.08998 * 109.47134 * 299.99061 * 13 12 10 34 34 H 1.09007 * 109.46922 * 59.99533 * 14 13 12 35 35 H 1.09003 * 109.46836 * 300.00289 * 14 13 12 36 36 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.61786 * 155.51886 * 23 5 4 38 38 H 1.08996 * 110.62043 * 278.52607 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0539 -0.7466 -1.2421 5 6 2.9194 -1.8906 -0.6601 6 1 2.3540 -2.8213 -0.6143 7 7 4.1474 -2.0657 -1.4398 8 6 4.7752 -3.2582 -1.4495 9 8 4.3232 -4.1871 -0.8128 10 6 6.0281 -3.4366 -2.2444 11 8 6.4800 -2.5079 -2.8815 12 7 6.6558 -4.6293 -2.2545 13 6 7.8836 -4.8043 -3.0341 14 6 8.3890 -6.2396 -2.8743 15 6 9.6517 -6.4198 -3.6768 16 1 10.0539 -5.5932 -4.2438 17 6 10.2937 -7.6400 -3.6872 18 7 9.8043 -8.6464 -2.9964 19 14 11.8586 -7.8635 -4.6825 20 1 11.5125 -8.3137 -6.0547 21 1 12.5882 -6.5722 -4.7545 22 1 12.7191 -8.8826 -4.0296 23 6 3.2379 -1.3652 0.7628 24 8 2.0188 -0.6995 1.1567 25 1 -0.3633 -1.0275 0.0181 26 1 -0.3633 0.5295 0.8809 27 1 -0.3633 0.4982 -0.8988 28 1 2.6619 -0.0834 -1.8576 29 1 1.2246 -1.1523 -1.8214 30 1 4.5086 -1.3232 -1.9490 31 1 6.2944 -5.3717 -1.7456 32 1 8.6436 -4.1098 -2.6759 33 1 7.6774 -4.6065 -4.0860 34 1 7.6291 -6.9343 -3.2323 35 1 8.5952 -6.4371 -1.8224 36 1 10.2558 -9.5050 -3.0041 37 1 3.4584 -2.1928 1.4371 38 1 4.0685 -0.6599 0.7346 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261478887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -153.325195 kcal Electronic energy + Delta-G solvation = -20077.304096 eV Core-core repulsion = 16725.381253 eV Total energy + Delta-G solvation = -3351.922843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.88500 -40.63680 -39.43482 -36.94489 -35.89857 -34.80393 -33.14207 -31.72000 -31.15884 -27.48155 -26.90771 -25.43630 -23.12862 -22.61912 -22.00156 -21.57239 -19.70240 -18.61328 -18.19269 -17.35824 -17.14589 -16.76831 -16.49602 -16.41795 -16.13153 -15.81259 -15.50185 -14.85941 -14.72875 -14.39636 -14.31025 -13.56646 -13.35341 -13.26516 -13.04707 -12.94822 -12.87248 -12.59329 -12.53163 -12.28568 -12.05558 -11.85241 -11.68885 -11.44300 -10.84903 -10.74950 -10.61886 -10.34039 -10.20674 -8.23803 -6.34978 0.26565 1.21711 1.43567 1.43809 1.55344 2.06506 2.38361 2.55176 2.94355 3.11298 3.31782 3.45793 3.67764 3.89595 4.00533 4.13279 4.38131 4.43405 4.45075 4.59210 4.65603 4.71509 4.81009 4.81402 4.90802 5.06344 5.09365 5.14165 5.31399 5.41944 5.54598 5.74553 5.84859 5.89965 6.12518 6.32144 6.66168 6.79044 6.89066 7.34665 8.88233 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.063190 B = 0.002702 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.999402 B =10360.181833 C =10566.798394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 H 0.085 0.915 4 C -0.151 4.151 5 C 0.108 3.892 6 H 0.099 0.901 7 N -0.676 5.676 8 C 0.518 3.482 9 O -0.538 6.538 10 C 0.501 3.499 11 O -0.547 6.547 12 N -0.688 5.688 13 C 0.138 3.862 14 C 0.018 3.982 15 C -0.544 4.544 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.263 1.263 22 H -0.283 1.283 23 C 0.037 3.963 24 O -0.389 6.389 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.423 0.577 31 H 0.414 0.586 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 18.038 4.142 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.009 3.991 3 H 0.103 0.897 4 C -0.189 4.189 5 C 0.003 3.997 6 H 0.117 0.883 7 N -0.331 5.331 8 C 0.298 3.702 9 O -0.414 6.414 10 C 0.282 3.718 11 O -0.425 6.425 12 N -0.339 5.339 13 C 0.015 3.985 14 C -0.020 4.020 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.187 1.187 22 H -0.208 1.208 23 C -0.040 4.040 24 O -0.308 6.308 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.262 0.738 31 H 0.251 0.749 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.249 17.863 4.396 25.218 hybrid contribution 0.992 -0.672 -0.440 1.276 sum -16.257 17.191 3.955 23.989 Atomic orbital electron populations 1.21978 0.92525 1.02923 1.03453 1.22937 0.96253 0.96224 0.83713 0.89739 1.23317 1.00650 0.96289 0.98656 1.22718 0.84784 1.01091 0.91079 0.88257 1.45590 1.25805 1.12508 1.49188 1.20021 0.84653 0.83916 0.81587 1.90775 1.66228 1.41069 1.43369 1.20255 0.85415 0.83567 0.82577 1.90724 1.67112 1.40579 1.44119 1.46079 1.26480 1.12791 1.48576 1.21485 0.83644 0.98763 0.94582 1.19182 0.95696 0.90441 0.96649 1.21455 1.09612 0.97421 1.29780 0.91636 1.25931 1.01316 0.95602 0.96632 1.70079 1.41618 1.02775 1.42344 0.85399 0.78631 0.78232 0.78504 1.19771 1.18723 1.20825 1.23924 0.88163 0.96924 0.95031 1.88931 1.39689 1.67827 1.34334 0.92341 0.92025 0.89078 0.87791 0.87925 0.73777 0.74918 0.91933 0.91890 0.97426 0.97428 0.92578 0.89148 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.36 71.98 0.67 -0.82 16 2 C 0.07 0.81 4.06 30.97 0.13 0.93 16 3 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.15 -1.61 6.39 31.58 0.20 -1.41 16 5 C 0.11 1.83 3.50 46.29 0.16 1.99 16 6 H 0.10 1.99 7.54 -2.39 -0.02 1.97 16 7 N -0.68 -13.25 5.18 -437.74 -2.27 -15.52 16 8 C 0.52 14.19 7.89 87.27 0.69 14.88 16 9 O -0.54 -17.15 16.12 -3.23 -0.05 -17.20 16 10 C 0.50 16.20 7.89 87.27 0.69 16.89 16 11 O -0.55 -19.21 16.48 -3.25 -0.05 -19.26 16 12 N -0.69 -24.37 5.55 -464.41 -2.58 -26.94 16 13 C 0.14 5.66 5.61 86.38 0.48 6.14 16 14 C 0.02 0.89 5.09 29.85 0.15 1.04 16 15 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 16 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.00 0.21 5.46 84.66 0.46 0.68 16 18 N -0.93 -54.68 13.29 21.45 0.28 -54.40 16 19 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C 0.04 0.67 7.41 72.66 0.54 1.21 16 24 O -0.39 -7.36 11.19 -148.98 -1.67 -9.02 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.76 7.77 -2.38 -0.02 0.75 16 29 H 0.10 0.89 7.70 -2.39 -0.02 0.88 16 30 H 0.42 6.91 7.88 -92.70 -0.73 6.18 16 31 H 0.41 14.20 7.94 -92.71 -0.74 13.46 16 32 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.13 326.72 -0.28 -66.41 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.39 Total: 18.82 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 4.41 Total: 12.00 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -4.56 Total: -96.86 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.77 Total: -45.48 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.13 -0.28 -66.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261478887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.913 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds