Wall clock time and date at job start Mon Mar 30 2020 02:19:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47104 * 2 1
4 4 C 1.52999 * 109.47531 * 120.00178 * 2 1 3
5 5 C 1.50702 * 109.47109 * 295.00233 * 4 2 1
6 6 N 1.34777 * 119.99816 * 179.97438 * 5 4 2
7 7 O 1.21282 * 120.00202 * 359.97438 * 5 4 2
8 8 C 1.50700 * 109.47105 * 240.00433 * 2 1 3
9 9 O 1.21280 * 119.99780 * 265.58723 * 8 2 1
10 10 N 1.34780 * 119.99967 * 85.58791 * 8 2 1
11 11 C 1.47427 * 125.64665 * 175.96201 * 10 8 2
12 12 C 1.54913 * 104.83187 * 203.86705 * 11 10 8
13 13 C 1.55157 * 101.57776 * 322.98703 * 12 11 10
14 14 O 1.42902 * 110.72400 * 277.14269 * 13 12 11
15 15 C 1.50701 * 110.71815 * 154.04454 * 13 12 11
16 16 H 1.08003 * 120.00164 * 239.32481 * 15 13 12
17 17 C 1.37875 * 120.00021 * 59.32784 * 15 13 12
18 18 N 1.31516 * 119.99898 * 5.75277 * 17 15 13
19 19 Si 1.86804 * 120.00345 * 185.74815 * 17 15 13
20 20 H 1.48494 * 109.46707 * 84.99194 * 19 17 15
21 21 H 1.48493 * 109.47228 * 204.99297 * 19 17 15
22 22 H 1.48507 * 109.46901 * 324.99415 * 19 17 15
23 23 C 1.47018 * 125.64795 * 355.65397 * 10 8 2
24 24 H 1.09003 * 109.47145 * 66.47337 * 1 2 3
25 25 H 1.08995 * 109.47075 * 186.48018 * 1 2 3
26 26 H 1.09004 * 109.47100 * 306.47770 * 1 2 3
27 27 H 1.09006 * 109.46797 * 54.99849 * 4 2 1
28 28 H 1.08994 * 109.47323 * 175.00131 * 4 2 1
29 29 H 0.96997 * 120.00496 * 359.97438 * 6 5 4
30 30 H 0.97005 * 119.99779 * 180.02562 * 6 5 4
31 31 H 1.09002 * 110.36577 * 322.69787 * 11 10 8
32 32 H 1.08997 * 110.36983 * 84.91453 * 11 10 8
33 33 H 1.08995 * 111.00466 * 81.06021 * 12 11 10
34 34 H 1.08998 * 111.00131 * 204.92153 * 12 11 10
35 35 H 0.96701 * 113.99486 * 298.54940 * 14 13 12
36 36 H 0.97001 * 119.99663 * 179.97438 * 18 17 15
37 37 H 1.09000 * 109.88299 * 298.62199 * 23 10 8
38 38 H 1.08999 * 109.88684 * 59.79134 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6414 0.0570 2.4766
6 7 1.9846 -0.3921 3.7001
7 8 1.0117 1.0873 2.3634
8 6 2.0323 -0.7103 -1.2305
9 8 2.3106 -1.8896 -1.1788
10 7 2.1723 -0.0350 -2.3885
11 6 2.7291 -0.5810 -3.6396
12 6 3.2372 0.6565 -4.4208
13 6 2.1521 1.7102 -4.0750
14 8 1.0144 1.5627 -4.9270
15 6 2.7129 3.1054 -4.1743
16 1 2.7059 3.7530 -3.3100
17 6 3.2350 3.5552 -5.3685
18 7 3.1418 2.8108 -6.4487
19 14 4.0745 5.2218 -5.4523
20 1 5.4962 5.0807 -5.0474
21 1 4.0046 5.7420 -6.8414
22 1 3.3899 6.1676 -4.5345
23 6 1.7891 1.3662 -2.6150
24 1 -0.3633 0.4102 -0.9423
25 1 -0.3633 -1.0211 0.1160
26 1 -0.3633 0.6110 0.8264
27 1 1.6054 -1.7199 1.2951
28 1 3.1263 -0.7994 1.2055
29 1 2.4879 -1.2163 3.7908
30 1 1.7276 0.1087 4.4902
31 1 3.5552 -1.2584 -3.4233
32 1 1.9543 -1.0975 -4.2061
33 1 4.2164 0.9712 -4.0600
34 1 3.2623 0.4588 -5.4924
35 1 1.2067 1.6923 -5.8658
36 1 3.5088 3.1274 -7.2890
37 1 0.7167 1.4867 -2.4614
38 1 2.3386 2.0156 -1.9335
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001261499909.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:19:16
Heat of formation + Delta-G solvation = -135.948721 kcal
Electronic energy + Delta-G solvation = -21502.100061 eV
Core-core repulsion = 18150.930718 eV
Total energy + Delta-G solvation = -3351.169343 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.13899 -39.16283 -37.34408 -34.24613 -33.97421 -33.80112 -32.23569 -29.84244
-28.36290 -27.72162 -25.18386 -24.04330 -21.78520 -20.34796 -19.89255 -18.46417
-17.64439 -17.26057 -16.89259 -16.15198 -15.58305 -15.26597 -14.96711 -14.65460
-14.14035 -14.03521 -13.56436 -13.32650 -12.96456 -12.52312 -12.24862 -12.01996
-11.82999 -11.69741 -11.35752 -11.29402 -11.10467 -10.98036 -10.85706 -10.52880
-10.49037 -10.11246 -10.00544 -9.82997 -9.51216 -9.21418 -8.65848 -8.22826
-8.01283 -6.30933 -4.38134 2.54702 3.02712 3.19327 3.25292 3.26803
3.30369 3.71308 4.24909 4.61096 4.91883 4.96792 5.03724 5.12814
5.50160 5.59576 5.67483 5.70475 5.83502 5.95915 6.02287 6.03895
6.19359 6.26734 6.31663 6.45833 6.60845 6.64495 6.92594 6.94955
7.15055 7.28409 7.34337 7.71191 7.97678 8.11534 8.15076 8.59919
8.64104 9.28029 9.39866 10.77049
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.024274 B = 0.004899 C = 0.004436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.233603 B = 5714.301849 C = 6310.255839
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.091 4.091
3 H 0.100 0.900
4 C -0.124 4.124
5 C 0.518 3.482
6 N -0.860 5.860
7 O -0.537 6.537
8 C 0.529 3.471
9 O -0.564 6.564
10 N -0.605 5.605
11 C 0.104 3.896
12 C -0.136 4.136
13 C 0.248 3.752
14 O -0.586 6.586
15 C -0.538 4.538
16 H 0.065 0.935
17 C 0.074 3.926
18 N -0.894 5.894
19 Si 0.902 3.098
20 H -0.278 1.278
21 H -0.285 1.285
22 H -0.272 1.272
23 C 0.112 3.888
24 H 0.062 0.938
25 H 0.053 0.947
26 H 0.083 0.917
27 H 0.104 0.896
28 H 0.097 0.903
29 H 0.401 0.599
30 H 0.399 0.601
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.066 0.934
34 H 0.087 0.913
35 H 0.384 0.616
36 H 0.269 0.731
37 H 0.064 0.936
38 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.352 -6.268 12.979 14.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.113 4.113
3 H 0.118 0.882
4 C -0.164 4.164
5 C 0.304 3.696
6 N -0.423 5.423
7 O -0.413 6.413
8 C 0.317 3.683
9 O -0.444 6.444
10 N -0.337 5.337
11 C -0.018 4.018
12 C -0.175 4.175
13 C 0.207 3.793
14 O -0.395 6.395
15 C -0.576 4.576
16 H 0.083 0.917
17 C -0.129 4.129
18 N -0.533 5.533
19 Si 0.729 3.271
20 H -0.204 1.204
21 H -0.211 1.211
22 H -0.197 1.197
23 C -0.010 4.010
24 H 0.081 0.919
25 H 0.073 0.927
26 H 0.102 0.898
27 H 0.122 0.878
28 H 0.115 0.885
29 H 0.229 0.771
30 H 0.230 0.770
31 H 0.080 0.920
32 H 0.078 0.922
33 H 0.085 0.915
34 H 0.105 0.895
35 H 0.234 0.766
36 H 0.079 0.921
37 H 0.083 0.917
38 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.875 -6.390 13.156 14.652
hybrid contribution 1.037 0.801 -0.317 1.348
sum 0.162 -5.589 12.839 14.003
Atomic orbital electron populations
1.21831 0.92247 1.02375 1.03805 1.20947 0.98485 1.00834 0.91017
0.88167 1.21484 1.03393 1.00371 0.91173 1.20731 0.78323 0.85339
0.85225 1.43896 1.60542 1.29609 1.08285 1.90732 1.39477 1.24464
1.86677 1.20142 0.77846 0.86595 0.83709 1.90623 1.52810 1.15677
1.85330 1.48647 1.60573 1.13943 1.10515 1.22373 0.97288 0.97724
0.84460 1.23309 1.00062 0.93773 1.00323 1.19451 0.82632 0.92797
0.84382 1.86116 1.36634 1.94377 1.22407 1.21489 1.40071 0.98713
0.97317 0.91727 1.24977 0.94894 0.97756 0.95277 1.69681 1.45577
1.37942 1.00080 0.86443 0.79854 0.83382 0.77391 1.20393 1.21081
1.19701 1.22241 0.99651 0.80066 0.99081 0.91863 0.92740 0.89835
0.87769 0.88459 0.77055 0.77033 0.92028 0.92203 0.91540 0.89461
0.76591 0.92148 0.91730 0.90813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16
2 C -0.09 -1.38 1.84 -91.77 -0.17 -1.55 16
3 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16
4 C -0.12 -1.48 4.63 -27.88 -0.13 -1.61 16
5 C 0.52 6.03 7.85 -10.98 -0.09 5.95 16
6 N -0.86 -6.24 8.87 31.22 0.28 -5.96 16
7 O -0.54 -8.32 14.82 5.56 0.08 -8.24 16
8 C 0.53 9.76 6.95 -10.98 -0.08 9.68 16
9 O -0.56 -11.48 16.50 5.56 0.09 -11.39 16
10 N -0.61 -12.00 3.33 -170.52 -0.57 -12.57 16
11 C 0.10 2.09 6.88 -2.53 -0.02 2.07 16
12 C -0.14 -2.99 5.47 -24.58 -0.13 -3.13 16
13 C 0.25 5.83 0.85 -89.93 -0.08 5.76 16
14 O -0.59 -14.49 13.07 -35.23 -0.46 -14.95 16
15 C -0.54 -13.70 8.22 -34.44 -0.28 -13.98 16
16 H 0.06 1.63 7.61 -52.48 -0.40 1.23 16
17 C 0.07 1.87 5.25 -17.82 -0.09 1.77 16
18 N -0.89 -22.76 10.71 55.43 0.59 -22.16 16
19 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16
20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
21 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16
22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16
23 C 0.11 2.32 5.65 -3.06 -0.02 2.31 16
24 H 0.06 0.97 7.20 -51.93 -0.37 0.60 16
25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
26 H 0.08 1.22 6.10 -51.93 -0.32 0.90 16
27 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16
28 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16
29 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16
30 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16
31 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16
32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.07 1.49 8.04 -51.93 -0.42 1.08 16
34 H 0.09 2.00 7.57 -51.93 -0.39 1.61 16
35 H 0.38 9.55 7.43 45.56 0.34 9.89 16
36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16
37 H 0.06 1.33 7.14 -51.93 -0.37 0.96 16
38 H 0.07 1.48 7.26 -51.93 -0.38 1.10 16
LS Contribution 312.59 15.07 4.71 4.71
Total: -1.00 -30.11 312.59 -5.69 -35.80
By element:
Atomic # 1 Polarization: 19.00 SS G_CDS: -4.64 Total: 14.36 kcal
Atomic # 6 Polarization: 6.24 SS G_CDS: -0.75 Total: 5.48 kcal
Atomic # 7 Polarization: -40.99 SS G_CDS: 0.30 Total: -40.69 kcal
Atomic # 8 Polarization: -34.29 SS G_CDS: -0.29 Total: -34.58 kcal
Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -30.11 -5.69 -35.80 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261499909.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.147 kcal
(2) G-P(sol) polarization free energy of solvation -30.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.259 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -135.949 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds