Wall clock time and date at job start Mon Mar 30 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 C 1.52999 * 109.47531 * 120.00178 * 2 1 3 5 5 C 1.50702 * 109.47109 * 295.00233 * 4 2 1 6 6 N 1.34777 * 119.99816 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00202 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.47105 * 240.00433 * 2 1 3 9 9 O 1.21280 * 119.99780 * 265.58723 * 8 2 1 10 10 N 1.34780 * 119.99967 * 85.58791 * 8 2 1 11 11 C 1.47427 * 125.64665 * 175.96201 * 10 8 2 12 12 C 1.54913 * 104.83187 * 203.86705 * 11 10 8 13 13 C 1.55157 * 101.57776 * 322.98703 * 12 11 10 14 14 O 1.42902 * 110.72400 * 277.14269 * 13 12 11 15 15 C 1.50701 * 110.71815 * 154.04454 * 13 12 11 16 16 H 1.08003 * 120.00164 * 239.32481 * 15 13 12 17 17 C 1.37875 * 120.00021 * 59.32784 * 15 13 12 18 18 N 1.31516 * 119.99898 * 5.75277 * 17 15 13 19 19 Si 1.86804 * 120.00345 * 185.74815 * 17 15 13 20 20 H 1.48494 * 109.46707 * 84.99194 * 19 17 15 21 21 H 1.48493 * 109.47228 * 204.99297 * 19 17 15 22 22 H 1.48507 * 109.46901 * 324.99415 * 19 17 15 23 23 C 1.47018 * 125.64795 * 355.65397 * 10 8 2 24 24 H 1.09003 * 109.47145 * 66.47337 * 1 2 3 25 25 H 1.08995 * 109.47075 * 186.48018 * 1 2 3 26 26 H 1.09004 * 109.47100 * 306.47770 * 1 2 3 27 27 H 1.09006 * 109.46797 * 54.99849 * 4 2 1 28 28 H 1.08994 * 109.47323 * 175.00131 * 4 2 1 29 29 H 0.96997 * 120.00496 * 359.97438 * 6 5 4 30 30 H 0.97005 * 119.99779 * 180.02562 * 6 5 4 31 31 H 1.09002 * 110.36577 * 322.69787 * 11 10 8 32 32 H 1.08997 * 110.36983 * 84.91453 * 11 10 8 33 33 H 1.08995 * 111.00466 * 81.06021 * 12 11 10 34 34 H 1.08998 * 111.00131 * 204.92153 * 12 11 10 35 35 H 0.96701 * 113.99486 * 298.54940 * 14 13 12 36 36 H 0.97001 * 119.99663 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.88299 * 298.62199 * 23 10 8 38 38 H 1.08999 * 109.88684 * 59.79134 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 7 1.9846 -0.3921 3.7001 7 8 1.0117 1.0873 2.3634 8 6 2.0323 -0.7103 -1.2305 9 8 2.3106 -1.8896 -1.1788 10 7 2.1723 -0.0350 -2.3885 11 6 2.7291 -0.5810 -3.6396 12 6 3.2372 0.6565 -4.4208 13 6 2.1521 1.7102 -4.0750 14 8 1.0144 1.5627 -4.9270 15 6 2.7129 3.1054 -4.1743 16 1 2.7059 3.7530 -3.3100 17 6 3.2350 3.5552 -5.3685 18 7 3.1418 2.8108 -6.4487 19 14 4.0745 5.2218 -5.4523 20 1 5.4962 5.0807 -5.0474 21 1 4.0046 5.7420 -6.8414 22 1 3.3899 6.1676 -4.5345 23 6 1.7891 1.3662 -2.6150 24 1 -0.3633 0.4102 -0.9423 25 1 -0.3633 -1.0211 0.1160 26 1 -0.3633 0.6110 0.8264 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7994 1.2055 29 1 2.4879 -1.2163 3.7908 30 1 1.7276 0.1087 4.4902 31 1 3.5552 -1.2584 -3.4233 32 1 1.9543 -1.0975 -4.2061 33 1 4.2164 0.9712 -4.0600 34 1 3.2623 0.4588 -5.4924 35 1 1.2067 1.6923 -5.8658 36 1 3.5088 3.1274 -7.2890 37 1 0.7167 1.4867 -2.4614 38 1 2.3386 2.0156 -1.9335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261499909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:16 Heat of formation + Delta-G solvation = -135.948721 kcal Electronic energy + Delta-G solvation = -21502.100061 eV Core-core repulsion = 18150.930718 eV Total energy + Delta-G solvation = -3351.169343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.13899 -39.16283 -37.34408 -34.24613 -33.97421 -33.80112 -32.23569 -29.84244 -28.36290 -27.72162 -25.18386 -24.04330 -21.78520 -20.34796 -19.89255 -18.46417 -17.64439 -17.26057 -16.89259 -16.15198 -15.58305 -15.26597 -14.96711 -14.65460 -14.14035 -14.03521 -13.56436 -13.32650 -12.96456 -12.52312 -12.24862 -12.01996 -11.82999 -11.69741 -11.35752 -11.29402 -11.10467 -10.98036 -10.85706 -10.52880 -10.49037 -10.11246 -10.00544 -9.82997 -9.51216 -9.21418 -8.65848 -8.22826 -8.01283 -6.30933 -4.38134 2.54702 3.02712 3.19327 3.25292 3.26803 3.30369 3.71308 4.24909 4.61096 4.91883 4.96792 5.03724 5.12814 5.50160 5.59576 5.67483 5.70475 5.83502 5.95915 6.02287 6.03895 6.19359 6.26734 6.31663 6.45833 6.60845 6.64495 6.92594 6.94955 7.15055 7.28409 7.34337 7.71191 7.97678 8.11534 8.15076 8.59919 8.64104 9.28029 9.39866 10.77049 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.004899 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.233603 B = 5714.301849 C = 6310.255839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.124 4.124 5 C 0.518 3.482 6 N -0.860 5.860 7 O -0.537 6.537 8 C 0.529 3.471 9 O -0.564 6.564 10 N -0.605 5.605 11 C 0.104 3.896 12 C -0.136 4.136 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.538 4.538 16 H 0.065 0.935 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.112 3.888 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.401 0.599 30 H 0.399 0.601 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.384 0.616 36 H 0.269 0.731 37 H 0.064 0.936 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 -6.268 12.979 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.118 0.882 4 C -0.164 4.164 5 C 0.304 3.696 6 N -0.423 5.423 7 O -0.413 6.413 8 C 0.317 3.683 9 O -0.444 6.444 10 N -0.337 5.337 11 C -0.018 4.018 12 C -0.175 4.175 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.576 4.576 16 H 0.083 0.917 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.010 4.010 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.229 0.771 30 H 0.230 0.770 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.234 0.766 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.875 -6.390 13.156 14.652 hybrid contribution 1.037 0.801 -0.317 1.348 sum 0.162 -5.589 12.839 14.003 Atomic orbital electron populations 1.21831 0.92247 1.02375 1.03805 1.20947 0.98485 1.00834 0.91017 0.88167 1.21484 1.03393 1.00371 0.91173 1.20731 0.78323 0.85339 0.85225 1.43896 1.60542 1.29609 1.08285 1.90732 1.39477 1.24464 1.86677 1.20142 0.77846 0.86595 0.83709 1.90623 1.52810 1.15677 1.85330 1.48647 1.60573 1.13943 1.10515 1.22373 0.97288 0.97724 0.84460 1.23309 1.00062 0.93773 1.00323 1.19451 0.82632 0.92797 0.84382 1.86116 1.36634 1.94377 1.22407 1.21489 1.40071 0.98713 0.97317 0.91727 1.24977 0.94894 0.97756 0.95277 1.69681 1.45577 1.37942 1.00080 0.86443 0.79854 0.83382 0.77391 1.20393 1.21081 1.19701 1.22241 0.99651 0.80066 0.99081 0.91863 0.92740 0.89835 0.87769 0.88459 0.77055 0.77033 0.92028 0.92203 0.91540 0.89461 0.76591 0.92148 0.91730 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.84 37.16 0.33 -1.78 16 2 C -0.09 -1.38 1.84 -91.77 -0.17 -1.55 16 3 H 0.10 1.58 7.07 -51.93 -0.37 1.21 16 4 C -0.12 -1.48 4.63 -27.88 -0.13 -1.61 16 5 C 0.52 6.03 7.85 -10.98 -0.09 5.95 16 6 N -0.86 -6.24 8.87 31.22 0.28 -5.96 16 7 O -0.54 -8.32 14.82 5.56 0.08 -8.24 16 8 C 0.53 9.76 6.95 -10.98 -0.08 9.68 16 9 O -0.56 -11.48 16.50 5.56 0.09 -11.39 16 10 N -0.61 -12.00 3.33 -170.52 -0.57 -12.57 16 11 C 0.10 2.09 6.88 -2.53 -0.02 2.07 16 12 C -0.14 -2.99 5.47 -24.58 -0.13 -3.13 16 13 C 0.25 5.83 0.85 -89.93 -0.08 5.76 16 14 O -0.59 -14.49 13.07 -35.23 -0.46 -14.95 16 15 C -0.54 -13.70 8.22 -34.44 -0.28 -13.98 16 16 H 0.06 1.63 7.61 -52.48 -0.40 1.23 16 17 C 0.07 1.87 5.25 -17.82 -0.09 1.77 16 18 N -0.89 -22.76 10.71 55.43 0.59 -22.16 16 19 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.11 2.32 5.65 -3.06 -0.02 2.31 16 24 H 0.06 0.97 7.20 -51.93 -0.37 0.60 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 1.22 6.10 -51.93 -0.32 0.90 16 27 H 0.10 1.16 8.03 -51.93 -0.42 0.74 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 30 H 0.40 2.47 8.93 -40.82 -0.36 2.11 16 31 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.49 8.04 -51.93 -0.42 1.08 16 34 H 0.09 2.00 7.57 -51.93 -0.39 1.61 16 35 H 0.38 9.55 7.43 45.56 0.34 9.89 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.06 1.33 7.14 -51.93 -0.37 0.96 16 38 H 0.07 1.48 7.26 -51.93 -0.38 1.10 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -30.11 312.59 -5.69 -35.80 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.64 Total: 14.36 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.75 Total: 5.48 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.30 Total: -40.69 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.29 Total: -34.58 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.11 -5.69 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.147 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds