Wall clock time and date at job start Mon Mar 30 2020 02:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47104 * 2 1 4 4 C 1.52999 * 109.47531 * 120.00178 * 2 1 3 5 5 C 1.50702 * 109.47109 * 295.00233 * 4 2 1 6 6 N 1.34777 * 119.99816 * 179.97438 * 5 4 2 7 7 O 1.21282 * 120.00202 * 359.97438 * 5 4 2 8 8 C 1.50700 * 109.47105 * 240.00433 * 2 1 3 9 9 O 1.21280 * 119.99780 * 265.58723 * 8 2 1 10 10 N 1.34780 * 119.99967 * 85.58791 * 8 2 1 11 11 C 1.47427 * 125.64665 * 175.96201 * 10 8 2 12 12 C 1.54913 * 104.83187 * 203.86705 * 11 10 8 13 13 C 1.55157 * 101.57776 * 322.98703 * 12 11 10 14 14 O 1.42902 * 110.72400 * 277.14269 * 13 12 11 15 15 C 1.50701 * 110.71815 * 154.04454 * 13 12 11 16 16 H 1.08003 * 120.00164 * 239.32481 * 15 13 12 17 17 C 1.37875 * 120.00021 * 59.32784 * 15 13 12 18 18 N 1.31516 * 119.99898 * 5.75277 * 17 15 13 19 19 Si 1.86804 * 120.00345 * 185.74815 * 17 15 13 20 20 H 1.48494 * 109.46707 * 84.99194 * 19 17 15 21 21 H 1.48493 * 109.47228 * 204.99297 * 19 17 15 22 22 H 1.48507 * 109.46901 * 324.99415 * 19 17 15 23 23 C 1.47018 * 125.64795 * 355.65397 * 10 8 2 24 24 H 1.09003 * 109.47145 * 66.47337 * 1 2 3 25 25 H 1.08995 * 109.47075 * 186.48018 * 1 2 3 26 26 H 1.09004 * 109.47100 * 306.47770 * 1 2 3 27 27 H 1.09006 * 109.46797 * 54.99849 * 4 2 1 28 28 H 1.08994 * 109.47323 * 175.00131 * 4 2 1 29 29 H 0.96997 * 120.00496 * 359.97438 * 6 5 4 30 30 H 0.97005 * 119.99779 * 180.02562 * 6 5 4 31 31 H 1.09002 * 110.36577 * 322.69787 * 11 10 8 32 32 H 1.08997 * 110.36983 * 84.91453 * 11 10 8 33 33 H 1.08995 * 111.00466 * 81.06021 * 12 11 10 34 34 H 1.08998 * 111.00131 * 204.92153 * 12 11 10 35 35 H 0.96701 * 113.99486 * 298.54940 * 14 13 12 36 36 H 0.97001 * 119.99663 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.88299 * 298.62199 * 23 10 8 38 38 H 1.08999 * 109.88684 * 59.79134 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 7 1.9846 -0.3921 3.7001 7 8 1.0117 1.0873 2.3634 8 6 2.0323 -0.7103 -1.2305 9 8 2.3106 -1.8896 -1.1788 10 7 2.1723 -0.0350 -2.3885 11 6 2.7291 -0.5810 -3.6396 12 6 3.2372 0.6565 -4.4208 13 6 2.1521 1.7102 -4.0750 14 8 1.0144 1.5627 -4.9270 15 6 2.7129 3.1054 -4.1743 16 1 2.7059 3.7530 -3.3100 17 6 3.2350 3.5552 -5.3685 18 7 3.1418 2.8108 -6.4487 19 14 4.0745 5.2218 -5.4523 20 1 5.4962 5.0807 -5.0474 21 1 4.0046 5.7420 -6.8414 22 1 3.3899 6.1676 -4.5345 23 6 1.7891 1.3662 -2.6150 24 1 -0.3633 0.4102 -0.9423 25 1 -0.3633 -1.0211 0.1160 26 1 -0.3633 0.6110 0.8264 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7994 1.2055 29 1 2.4879 -1.2163 3.7908 30 1 1.7276 0.1087 4.4902 31 1 3.5552 -1.2584 -3.4233 32 1 1.9543 -1.0975 -4.2061 33 1 4.2164 0.9712 -4.0600 34 1 3.2623 0.4588 -5.4924 35 1 1.2067 1.6923 -5.8658 36 1 3.5088 3.1274 -7.2890 37 1 0.7167 1.4867 -2.4614 38 1 2.3386 2.0156 -1.9335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:15 Heat of formation + Delta-G solvation = -160.212727 kcal Electronic energy + Delta-G solvation = -21503.152227 eV Core-core repulsion = 18150.930718 eV Total energy + Delta-G solvation = -3352.221509 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45314 -40.37519 -39.01131 -36.01973 -35.19049 -34.61694 -34.18878 -31.51003 -30.08909 -28.81155 -26.99545 -25.47638 -23.21194 -21.72611 -21.35347 -19.88811 -19.18980 -18.57558 -17.93339 -17.44013 -17.05541 -16.89395 -16.34577 -16.14539 -15.84168 -15.45050 -14.83367 -14.67658 -14.49935 -14.00805 -13.71000 -13.58745 -13.39104 -13.20474 -13.13126 -12.91234 -12.62621 -12.43347 -12.27232 -12.21550 -12.09377 -11.93607 -11.29265 -11.03417 -10.77688 -10.59010 -10.53257 -10.13219 -9.63083 -8.23102 -6.36844 1.44146 1.47093 1.54850 1.55675 1.66038 1.96394 2.40777 2.69176 3.03334 3.46751 3.70085 3.79927 3.95674 4.11380 4.19975 4.21059 4.34644 4.40828 4.55775 4.63393 4.67126 4.72144 4.88919 4.92980 5.01067 5.15694 5.25274 5.28900 5.44636 5.49666 5.77569 5.96055 6.08069 6.47893 6.54651 6.68987 7.08355 7.32210 7.38986 7.43235 8.83426 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024274 B = 0.004899 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.233603 B = 5714.301849 C = 6310.255839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.093 0.907 4 C -0.119 4.119 5 C 0.521 3.479 6 N -0.836 5.836 7 O -0.581 6.581 8 C 0.530 3.470 9 O -0.580 6.580 10 N -0.610 5.610 11 C 0.110 3.890 12 C -0.124 4.124 13 C 0.233 3.767 14 O -0.593 6.593 15 C -0.560 4.560 16 H 0.060 0.940 17 C 0.037 3.963 18 N -0.908 5.908 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.273 1.273 23 C 0.123 3.877 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.418 0.582 30 H 0.409 0.591 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.379 0.621 36 H 0.270 0.730 37 H 0.064 0.936 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -6.611 14.463 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.159 4.159 5 C 0.306 3.694 6 N -0.400 5.400 7 O -0.461 6.461 8 C 0.320 3.680 9 O -0.461 6.461 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.193 3.807 14 O -0.402 6.402 15 C -0.598 4.598 16 H 0.078 0.922 17 C -0.165 4.165 18 N -0.547 5.547 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.000 4.000 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.249 0.751 30 H 0.240 0.760 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.356 -6.776 14.688 16.179 hybrid contribution 0.885 0.857 -0.761 1.448 sum 0.529 -5.919 13.926 15.141 Atomic orbital electron populations 1.21770 0.91771 1.02908 1.03106 1.20952 0.98777 1.00421 0.90806 0.88872 1.21451 1.04115 1.00470 0.89896 1.20617 0.77958 0.84670 0.86160 1.43669 1.59211 1.29922 1.07198 1.90725 1.41747 1.26313 1.87328 1.20701 0.76960 0.86413 0.83924 1.90611 1.53459 1.16458 1.85580 1.48697 1.61013 1.13581 1.10938 1.22249 0.97524 0.96909 0.84594 1.23089 0.99246 0.94248 0.99737 1.19655 0.82772 0.92673 0.85620 1.86109 1.37425 1.94400 1.22269 1.21743 1.40853 0.99739 0.97507 0.92158 1.25608 0.95272 1.00594 0.95021 1.69754 1.45675 1.38983 1.00291 0.85566 0.78920 0.79874 0.77235 1.19998 1.20829 1.19759 1.22043 0.99702 0.80770 0.97461 0.93167 0.91738 0.89683 0.86534 0.87271 0.75070 0.75975 0.90945 0.92444 0.92331 0.90754 0.77082 0.92016 0.91759 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.84 71.98 0.64 -3.24 16 2 C -0.09 -2.55 1.84 -11.54 -0.02 -2.57 16 3 H 0.09 2.86 7.07 -2.39 -0.02 2.85 16 4 C -0.12 -2.58 4.63 29.85 0.14 -2.45 16 5 C 0.52 11.02 7.85 87.66 0.69 11.71 16 6 N -0.84 -9.77 8.87 -173.53 -1.54 -11.31 16 7 O -0.58 -17.30 14.82 -3.04 -0.04 -17.34 16 8 C 0.53 18.88 6.95 87.66 0.61 19.49 16 9 O -0.58 -22.62 16.50 -3.03 -0.05 -22.67 16 10 N -0.61 -23.77 3.33 -811.78 -2.70 -26.47 16 11 C 0.11 4.36 6.88 86.86 0.60 4.96 16 12 C -0.12 -5.50 5.47 31.99 0.17 -5.32 16 13 C 0.23 11.02 0.85 -10.35 -0.01 11.01 16 14 O -0.59 -29.63 13.07 -148.98 -1.95 -31.58 16 15 C -0.56 -28.60 8.22 25.60 0.21 -28.39 16 16 H 0.06 3.05 7.61 -2.91 -0.02 3.03 16 17 C 0.04 1.84 5.25 84.65 0.44 2.28 16 18 N -0.91 -46.27 10.71 21.45 0.23 -46.04 16 19 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.12 5.08 5.65 86.73 0.49 5.57 16 24 H 0.05 1.51 7.20 -2.39 -0.02 1.50 16 25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 2.40 6.10 -2.39 -0.01 2.39 16 27 H 0.12 2.26 8.03 -2.38 -0.02 2.24 16 28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.42 2.27 8.83 -92.71 -0.82 1.45 16 30 H 0.41 3.95 8.93 -92.70 -0.83 3.12 16 31 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16 34 H 0.07 3.45 7.57 -2.39 -0.02 3.43 16 35 H 0.38 19.23 7.43 -74.06 -0.55 18.68 16 36 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 37 H 0.06 2.64 7.14 -2.39 -0.02 2.63 16 38 H 0.08 3.18 7.26 -2.39 -0.02 3.16 16 Total: -1.00 -62.94 312.59 -1.15 -64.10 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -1.09 Total: 35.69 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 3.96 Total: 13.04 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -4.01 Total: -83.82 kcal Atomic # 8 Polarization: -69.54 SS G_CDS: -2.04 Total: -71.58 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -62.94 -1.15 -64.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.115 kcal (2) G-P(sol) polarization free energy of solvation -62.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds