Wall clock time and date at job start Mon Mar 30 2020 02:19:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47104 * 2 1
4 4 C 1.52999 * 109.47531 * 120.00178 * 2 1 3
5 5 C 1.50702 * 109.47109 * 295.00233 * 4 2 1
6 6 N 1.34777 * 119.99816 * 179.97438 * 5 4 2
7 7 O 1.21282 * 120.00202 * 359.97438 * 5 4 2
8 8 C 1.50700 * 109.47105 * 240.00433 * 2 1 3
9 9 O 1.21280 * 119.99780 * 265.58723 * 8 2 1
10 10 N 1.34780 * 119.99967 * 85.58791 * 8 2 1
11 11 C 1.47427 * 125.64665 * 175.96201 * 10 8 2
12 12 C 1.54913 * 104.83187 * 203.86705 * 11 10 8
13 13 C 1.55157 * 101.57776 * 322.98703 * 12 11 10
14 14 O 1.42902 * 110.72400 * 277.14269 * 13 12 11
15 15 C 1.50701 * 110.71815 * 154.04454 * 13 12 11
16 16 H 1.08003 * 120.00164 * 239.32481 * 15 13 12
17 17 C 1.37875 * 120.00021 * 59.32784 * 15 13 12
18 18 N 1.31516 * 119.99898 * 5.75277 * 17 15 13
19 19 Si 1.86804 * 120.00345 * 185.74815 * 17 15 13
20 20 H 1.48494 * 109.46707 * 84.99194 * 19 17 15
21 21 H 1.48493 * 109.47228 * 204.99297 * 19 17 15
22 22 H 1.48507 * 109.46901 * 324.99415 * 19 17 15
23 23 C 1.47018 * 125.64795 * 355.65397 * 10 8 2
24 24 H 1.09003 * 109.47145 * 66.47337 * 1 2 3
25 25 H 1.08995 * 109.47075 * 186.48018 * 1 2 3
26 26 H 1.09004 * 109.47100 * 306.47770 * 1 2 3
27 27 H 1.09006 * 109.46797 * 54.99849 * 4 2 1
28 28 H 1.08994 * 109.47323 * 175.00131 * 4 2 1
29 29 H 0.96997 * 120.00496 * 359.97438 * 6 5 4
30 30 H 0.97005 * 119.99779 * 180.02562 * 6 5 4
31 31 H 1.09002 * 110.36577 * 322.69787 * 11 10 8
32 32 H 1.08997 * 110.36983 * 84.91453 * 11 10 8
33 33 H 1.08995 * 111.00466 * 81.06021 * 12 11 10
34 34 H 1.08998 * 111.00131 * 204.92153 * 12 11 10
35 35 H 0.96701 * 113.99486 * 298.54940 * 14 13 12
36 36 H 0.97001 * 119.99663 * 179.97438 * 18 17 15
37 37 H 1.09000 * 109.88299 * 298.62199 * 23 10 8
38 38 H 1.08999 * 109.88684 * 59.79134 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7213 1.2492
5 6 1.6414 0.0570 2.4766
6 7 1.9846 -0.3921 3.7001
7 8 1.0117 1.0873 2.3634
8 6 2.0323 -0.7103 -1.2305
9 8 2.3106 -1.8896 -1.1788
10 7 2.1723 -0.0350 -2.3885
11 6 2.7291 -0.5810 -3.6396
12 6 3.2372 0.6565 -4.4208
13 6 2.1521 1.7102 -4.0750
14 8 1.0144 1.5627 -4.9270
15 6 2.7129 3.1054 -4.1743
16 1 2.7059 3.7530 -3.3100
17 6 3.2350 3.5552 -5.3685
18 7 3.1418 2.8108 -6.4487
19 14 4.0745 5.2218 -5.4523
20 1 5.4962 5.0807 -5.0474
21 1 4.0046 5.7420 -6.8414
22 1 3.3899 6.1676 -4.5345
23 6 1.7891 1.3662 -2.6150
24 1 -0.3633 0.4102 -0.9423
25 1 -0.3633 -1.0211 0.1160
26 1 -0.3633 0.6110 0.8264
27 1 1.6054 -1.7199 1.2951
28 1 3.1263 -0.7994 1.2055
29 1 2.4879 -1.2163 3.7908
30 1 1.7276 0.1087 4.4902
31 1 3.5552 -1.2584 -3.4233
32 1 1.9543 -1.0975 -4.2061
33 1 4.2164 0.9712 -4.0600
34 1 3.2623 0.4588 -5.4924
35 1 1.2067 1.6923 -5.8658
36 1 3.5088 3.1274 -7.2890
37 1 0.7167 1.4867 -2.4614
38 1 2.3386 2.0156 -1.9335
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001261499909.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:19:15
Heat of formation + Delta-G solvation = -160.212727 kcal
Electronic energy + Delta-G solvation = -21503.152227 eV
Core-core repulsion = 18150.930718 eV
Total energy + Delta-G solvation = -3352.221509 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-41.45314 -40.37519 -39.01131 -36.01973 -35.19049 -34.61694 -34.18878 -31.51003
-30.08909 -28.81155 -26.99545 -25.47638 -23.21194 -21.72611 -21.35347 -19.88811
-19.18980 -18.57558 -17.93339 -17.44013 -17.05541 -16.89395 -16.34577 -16.14539
-15.84168 -15.45050 -14.83367 -14.67658 -14.49935 -14.00805 -13.71000 -13.58745
-13.39104 -13.20474 -13.13126 -12.91234 -12.62621 -12.43347 -12.27232 -12.21550
-12.09377 -11.93607 -11.29265 -11.03417 -10.77688 -10.59010 -10.53257 -10.13219
-9.63083 -8.23102 -6.36844 1.44146 1.47093 1.54850 1.55675 1.66038
1.96394 2.40777 2.69176 3.03334 3.46751 3.70085 3.79927 3.95674
4.11380 4.19975 4.21059 4.34644 4.40828 4.55775 4.63393 4.67126
4.72144 4.88919 4.92980 5.01067 5.15694 5.25274 5.28900 5.44636
5.49666 5.77569 5.96055 6.08069 6.47893 6.54651 6.68987 7.08355
7.32210 7.38986 7.43235 8.83426
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.024274 B = 0.004899 C = 0.004436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.233603 B = 5714.301849 C = 6310.255839
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.088 4.088
3 H 0.093 0.907
4 C -0.119 4.119
5 C 0.521 3.479
6 N -0.836 5.836
7 O -0.581 6.581
8 C 0.530 3.470
9 O -0.580 6.580
10 N -0.610 5.610
11 C 0.110 3.890
12 C -0.124 4.124
13 C 0.233 3.767
14 O -0.593 6.593
15 C -0.560 4.560
16 H 0.060 0.940
17 C 0.037 3.963
18 N -0.908 5.908
19 Si 0.958 3.042
20 H -0.274 1.274
21 H -0.283 1.283
22 H -0.273 1.273
23 C 0.123 3.877
24 H 0.049 0.951
25 H 0.064 0.936
26 H 0.084 0.916
27 H 0.117 0.883
28 H 0.109 0.891
29 H 0.418 0.582
30 H 0.409 0.591
31 H 0.072 0.928
32 H 0.057 0.943
33 H 0.058 0.942
34 H 0.074 0.926
35 H 0.379 0.621
36 H 0.270 0.730
37 H 0.064 0.936
38 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.148 -6.611 14.463 15.903
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.110 4.110
3 H 0.111 0.889
4 C -0.159 4.159
5 C 0.306 3.694
6 N -0.400 5.400
7 O -0.461 6.461
8 C 0.320 3.680
9 O -0.461 6.461
10 N -0.342 5.342
11 C -0.013 4.013
12 C -0.163 4.163
13 C 0.193 3.807
14 O -0.402 6.402
15 C -0.598 4.598
16 H 0.078 0.922
17 C -0.165 4.165
18 N -0.547 5.547
19 Si 0.784 3.216
20 H -0.200 1.200
21 H -0.208 1.208
22 H -0.198 1.198
23 C 0.000 4.000
24 H 0.068 0.932
25 H 0.083 0.917
26 H 0.103 0.897
27 H 0.135 0.865
28 H 0.127 0.873
29 H 0.249 0.751
30 H 0.240 0.760
31 H 0.091 0.909
32 H 0.076 0.924
33 H 0.077 0.923
34 H 0.092 0.908
35 H 0.229 0.771
36 H 0.080 0.920
37 H 0.082 0.918
38 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -0.356 -6.776 14.688 16.179
hybrid contribution 0.885 0.857 -0.761 1.448
sum 0.529 -5.919 13.926 15.141
Atomic orbital electron populations
1.21770 0.91771 1.02908 1.03106 1.20952 0.98777 1.00421 0.90806
0.88872 1.21451 1.04115 1.00470 0.89896 1.20617 0.77958 0.84670
0.86160 1.43669 1.59211 1.29922 1.07198 1.90725 1.41747 1.26313
1.87328 1.20701 0.76960 0.86413 0.83924 1.90611 1.53459 1.16458
1.85580 1.48697 1.61013 1.13581 1.10938 1.22249 0.97524 0.96909
0.84594 1.23089 0.99246 0.94248 0.99737 1.19655 0.82772 0.92673
0.85620 1.86109 1.37425 1.94400 1.22269 1.21743 1.40853 0.99739
0.97507 0.92158 1.25608 0.95272 1.00594 0.95021 1.69754 1.45675
1.38983 1.00291 0.85566 0.78920 0.79874 0.77235 1.19998 1.20829
1.19759 1.22043 0.99702 0.80770 0.97461 0.93167 0.91738 0.89683
0.86534 0.87271 0.75070 0.75975 0.90945 0.92444 0.92331 0.90754
0.77082 0.92016 0.91759 0.90188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.87 8.84 71.98 0.64 -3.24 16
2 C -0.09 -2.55 1.84 -11.54 -0.02 -2.57 16
3 H 0.09 2.86 7.07 -2.39 -0.02 2.85 16
4 C -0.12 -2.58 4.63 29.85 0.14 -2.45 16
5 C 0.52 11.02 7.85 87.66 0.69 11.71 16
6 N -0.84 -9.77 8.87 -173.53 -1.54 -11.31 16
7 O -0.58 -17.30 14.82 -3.04 -0.04 -17.34 16
8 C 0.53 18.88 6.95 87.66 0.61 19.49 16
9 O -0.58 -22.62 16.50 -3.03 -0.05 -22.67 16
10 N -0.61 -23.77 3.33 -811.78 -2.70 -26.47 16
11 C 0.11 4.36 6.88 86.86 0.60 4.96 16
12 C -0.12 -5.50 5.47 31.99 0.17 -5.32 16
13 C 0.23 11.02 0.85 -10.35 -0.01 11.01 16
14 O -0.59 -29.63 13.07 -148.98 -1.95 -31.58 16
15 C -0.56 -28.60 8.22 25.60 0.21 -28.39 16
16 H 0.06 3.05 7.61 -2.91 -0.02 3.03 16
17 C 0.04 1.84 5.25 84.65 0.44 2.28 16
18 N -0.91 -46.27 10.71 21.45 0.23 -46.04 16
19 Si 0.96 40.55 29.54 68.60 2.03 42.58 16
20 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16
21 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16
22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
23 C 0.12 5.08 5.65 86.73 0.49 5.57 16
24 H 0.05 1.51 7.20 -2.39 -0.02 1.50 16
25 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16
26 H 0.08 2.40 6.10 -2.39 -0.01 2.39 16
27 H 0.12 2.26 8.03 -2.38 -0.02 2.24 16
28 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16
29 H 0.42 2.27 8.83 -92.71 -0.82 1.45 16
30 H 0.41 3.95 8.93 -92.70 -0.83 3.12 16
31 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16
32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
33 H 0.06 2.64 8.04 -2.39 -0.02 2.62 16
34 H 0.07 3.45 7.57 -2.39 -0.02 3.43 16
35 H 0.38 19.23 7.43 -74.06 -0.55 18.68 16
36 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16
37 H 0.06 2.64 7.14 -2.39 -0.02 2.63 16
38 H 0.08 3.18 7.26 -2.39 -0.02 3.16 16
Total: -1.00 -62.94 312.59 -1.15 -64.10
By element:
Atomic # 1 Polarization: 36.77 SS G_CDS: -1.09 Total: 35.69 kcal
Atomic # 6 Polarization: 9.08 SS G_CDS: 3.96 Total: 13.04 kcal
Atomic # 7 Polarization: -79.81 SS G_CDS: -4.01 Total: -83.82 kcal
Atomic # 8 Polarization: -69.54 SS G_CDS: -2.04 Total: -71.58 kcal
Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal
Total: -62.94 -1.15 -64.10 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001261499909.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -96.115 kcal
(2) G-P(sol) polarization free energy of solvation -62.943 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal
(6) G-S(sol) free energy of system = (1) + (5) -160.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds