Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47233 * 239.99628 * 2 1 3 5 5 C 1.50694 * 109.46922 * 64.99773 * 4 2 1 6 6 N 1.34775 * 120.00019 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00372 * 0.02562 * 5 4 2 8 8 C 1.50702 * 109.47361 * 119.99199 * 2 1 3 9 9 O 1.21285 * 119.99782 * 93.97231 * 8 2 1 10 10 N 1.34777 * 120.00636 * 273.98159 * 8 2 1 11 11 C 1.47424 * 125.64430 * 354.66008 * 10 8 2 12 12 C 1.54911 * 104.83210 * 155.91032 * 11 10 8 13 13 C 1.55157 * 101.58113 * 37.01033 * 12 11 10 14 14 O 1.42900 * 110.71715 * 82.85907 * 13 12 11 15 15 C 1.50695 * 110.72266 * 205.96011 * 13 12 11 16 16 H 1.07997 * 120.00259 * 116.16213 * 15 13 12 17 17 C 1.37879 * 119.99727 * 296.15362 * 15 13 12 18 18 N 1.31519 * 119.99788 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00031 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47144 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47090 * 120.00144 * 19 17 15 22 22 H 1.48505 * 109.47149 * 240.00247 * 19 17 15 23 23 C 1.47022 * 125.65163 * 174.71122 * 10 8 2 24 24 H 1.09003 * 109.47389 * 304.71328 * 1 2 3 25 25 H 1.08998 * 109.47041 * 64.71739 * 1 2 3 26 26 H 1.09004 * 109.46945 * 184.72014 * 1 2 3 27 27 H 1.09001 * 109.47213 * 184.99974 * 4 2 1 28 28 H 1.09003 * 109.47044 * 304.99816 * 4 2 1 29 29 H 0.97003 * 119.99700 * 0.02562 * 6 5 4 30 30 H 0.96996 * 120.00633 * 179.97438 * 6 5 4 31 31 H 1.09002 * 110.36656 * 37.07754 * 11 10 8 32 32 H 1.08993 * 110.36973 * 274.75348 * 11 10 8 33 33 H 1.08995 * 111.00472 * 278.93584 * 12 11 10 34 34 H 1.08997 * 111.03807 * 155.09810 * 12 11 10 35 35 H 0.96691 * 114.00460 * 61.45642 * 14 13 12 36 36 H 0.97002 * 119.99549 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.88521 * 61.59815 * 23 10 8 38 38 H 1.09004 * 109.87522 * 300.43243 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 7 1.9853 -0.3916 -3.7000 7 8 1.0116 1.0872 -2.3633 8 6 2.0324 -0.7102 1.2306 9 8 2.3031 -1.8914 1.1809 10 7 2.1807 -0.0330 2.3863 11 6 1.9966 1.4193 2.5608 12 6 1.6640 1.5992 4.0630 13 6 2.5759 0.5264 4.7147 14 8 3.9033 1.0274 4.8855 15 6 2.0059 0.0717 6.0335 16 1 1.6904 -0.9533 6.1608 17 6 1.8872 0.9643 7.0776 18 7 2.2711 2.2126 6.9224 19 14 1.1799 0.4010 8.7122 20 1 0.8261 -1.0389 8.6286 21 1 2.1889 0.6009 9.7834 22 1 -0.0370 1.1929 9.0243 23 6 2.5538 -0.6199 3.6817 24 1 -0.3634 0.5852 0.8448 25 1 -0.3633 0.4389 -0.9292 26 1 -0.3633 -1.0242 0.0846 27 1 3.1263 -0.7995 -1.2055 28 1 1.6054 -1.7199 -1.2950 29 1 2.4892 -1.2155 -3.7906 30 1 1.7284 0.1090 -4.4901 31 1 1.1706 1.7738 1.9443 32 1 2.9142 1.9509 2.3091 33 1 0.6124 1.3890 4.2582 34 1 1.9305 2.5990 4.4058 35 1 3.9610 1.7986 5.4658 36 1 2.1880 2.8405 7.6572 37 1 3.5416 -1.0751 3.6117 38 1 1.8180 -1.3689 3.9748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261499910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = -135.378353 kcal Electronic energy + Delta-G solvation = -21401.830329 eV Core-core repulsion = 18050.685719 eV Total energy + Delta-G solvation = -3351.144610 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17814 -39.18525 -37.33459 -34.35040 -33.94115 -33.85215 -32.19064 -29.72298 -28.43773 -27.80486 -25.45163 -23.59197 -22.07099 -20.57763 -19.58323 -18.51376 -17.65946 -17.22365 -17.06130 -16.18194 -15.44916 -15.34759 -14.94667 -14.59857 -14.37737 -14.00972 -13.54759 -13.38335 -12.95914 -12.63752 -12.12342 -12.06025 -11.91082 -11.48475 -11.39081 -11.34122 -11.16176 -11.01509 -10.86508 -10.60566 -10.45496 -10.11942 -10.05573 -9.87276 -9.43539 -9.23533 -8.67073 -8.21752 -8.00378 -6.29568 -4.36475 2.48943 3.02666 3.18787 3.22222 3.28047 3.32954 3.69514 4.26857 4.56940 4.86140 4.96772 4.99915 5.09142 5.45707 5.56357 5.63267 5.65905 5.76458 5.92235 5.98584 6.02307 6.11570 6.22504 6.34542 6.46267 6.58096 6.69402 6.90678 6.97396 7.10207 7.29210 7.34186 7.73110 8.01683 8.07897 8.12510 8.60419 8.66673 9.30905 9.41228 10.78416 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040547 B = 0.004135 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.382953 B = 6769.918437 C = 6860.127046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.519 3.481 6 N -0.859 5.859 7 O -0.539 6.539 8 C 0.527 3.473 9 O -0.559 6.559 10 N -0.605 5.605 11 C 0.093 3.907 12 C -0.136 4.136 13 C 0.247 3.753 14 O -0.586 6.586 15 C -0.534 4.534 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.903 3.097 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.122 3.878 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.402 0.598 30 H 0.399 0.601 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.383 0.617 36 H 0.268 0.732 37 H 0.061 0.939 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.215 -1.894 -15.543 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.166 4.166 5 C 0.305 3.695 6 N -0.423 5.423 7 O -0.416 6.416 8 C 0.315 3.685 9 O -0.439 6.439 10 N -0.337 5.337 11 C -0.030 4.030 12 C -0.175 4.175 13 C 0.206 3.794 14 O -0.395 6.395 15 C -0.572 4.572 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.000 4.000 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.230 0.770 30 H 0.230 0.770 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.328 -2.240 -15.648 15.863 hybrid contribution -0.322 0.129 0.919 0.982 sum -1.650 -2.111 -14.729 14.970 Atomic orbital electron populations 1.21827 0.92215 1.02285 1.03866 1.20941 0.98420 1.00648 0.91188 0.88490 1.21481 1.03461 1.00506 0.91115 1.20733 0.78245 0.85297 0.85249 1.43900 1.60412 1.29665 1.08280 1.90723 1.39624 1.24540 1.86722 1.20124 0.77948 0.86834 0.83631 1.90641 1.52274 1.16032 1.84930 1.48633 1.66689 1.09549 1.08832 1.22553 1.00069 0.80393 0.99968 1.23315 1.01168 1.02602 0.90386 1.19466 0.80642 0.87859 0.91386 1.86118 1.29534 1.51999 1.71848 1.21559 1.41898 0.97210 0.96522 0.91721 1.24985 0.94288 0.94650 0.99104 1.69657 1.47730 1.03363 1.32859 0.86358 0.78664 0.79038 0.82894 1.19596 1.20768 1.20824 1.22072 0.99720 0.97010 0.81163 0.91913 0.89987 0.92594 0.88399 0.87649 0.76985 0.77023 0.91798 0.91875 0.91426 0.89478 0.76575 0.92236 0.92080 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.09 -1.30 1.69 -91.77 -0.15 -1.46 16 3 H 0.10 1.41 7.00 -51.93 -0.36 1.04 16 4 C -0.13 -1.45 4.63 -27.89 -0.13 -1.58 16 5 C 0.52 5.73 7.78 -10.99 -0.09 5.65 16 6 N -0.86 -5.83 8.87 31.22 0.28 -5.56 16 7 O -0.54 -7.91 14.82 5.56 0.08 -7.83 16 8 C 0.53 9.70 6.94 -10.98 -0.08 9.62 16 9 O -0.56 -11.68 16.55 5.55 0.09 -11.59 16 10 N -0.61 -11.99 3.33 -170.52 -0.57 -12.56 16 11 C 0.09 1.70 6.36 -2.53 -0.02 1.69 16 12 C -0.14 -2.92 5.56 -24.58 -0.14 -3.06 16 13 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16 14 O -0.59 -14.70 13.06 -35.23 -0.46 -15.16 16 15 C -0.53 -13.93 8.22 -34.44 -0.28 -14.21 16 16 H 0.06 1.70 7.56 -52.49 -0.40 1.30 16 17 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 18 N -0.90 -22.92 10.69 55.43 0.59 -22.32 16 19 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.12 2.76 6.23 -3.06 -0.02 2.74 16 24 H 0.06 0.87 7.51 -51.93 -0.39 0.48 16 25 H 0.08 1.11 5.88 -51.93 -0.31 0.80 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.11 1.15 8.03 -51.93 -0.42 0.74 16 29 H 0.40 1.63 8.83 -40.82 -0.36 1.27 16 30 H 0.40 2.27 8.93 -40.82 -0.36 1.91 16 31 H 0.06 1.02 6.76 -51.93 -0.35 0.67 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 34 H 0.09 1.94 7.64 -51.93 -0.40 1.55 16 35 H 0.38 9.63 7.28 45.56 0.33 9.96 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 38 H 0.07 1.63 7.66 -51.93 -0.40 1.23 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -30.64 312.57 -5.68 -36.32 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -4.65 Total: 13.45 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.74 Total: 5.35 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.30 Total: -40.44 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.29 Total: -34.58 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.64 -5.68 -36.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.059 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds