Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47233 * 239.99628 * 2 1 3 5 5 C 1.50694 * 109.46922 * 64.99773 * 4 2 1 6 6 N 1.34775 * 120.00019 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00372 * 0.02562 * 5 4 2 8 8 C 1.50702 * 109.47361 * 119.99199 * 2 1 3 9 9 O 1.21285 * 119.99782 * 93.97231 * 8 2 1 10 10 N 1.34777 * 120.00636 * 273.98159 * 8 2 1 11 11 C 1.47424 * 125.64430 * 354.66008 * 10 8 2 12 12 C 1.54911 * 104.83210 * 155.91032 * 11 10 8 13 13 C 1.55157 * 101.58113 * 37.01033 * 12 11 10 14 14 O 1.42900 * 110.71715 * 82.85907 * 13 12 11 15 15 C 1.50695 * 110.72266 * 205.96011 * 13 12 11 16 16 H 1.07997 * 120.00259 * 116.16213 * 15 13 12 17 17 C 1.37879 * 119.99727 * 296.15362 * 15 13 12 18 18 N 1.31519 * 119.99788 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00031 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47144 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47090 * 120.00144 * 19 17 15 22 22 H 1.48505 * 109.47149 * 240.00247 * 19 17 15 23 23 C 1.47022 * 125.65163 * 174.71122 * 10 8 2 24 24 H 1.09003 * 109.47389 * 304.71328 * 1 2 3 25 25 H 1.08998 * 109.47041 * 64.71739 * 1 2 3 26 26 H 1.09004 * 109.46945 * 184.72014 * 1 2 3 27 27 H 1.09001 * 109.47213 * 184.99974 * 4 2 1 28 28 H 1.09003 * 109.47044 * 304.99816 * 4 2 1 29 29 H 0.97003 * 119.99700 * 0.02562 * 6 5 4 30 30 H 0.96996 * 120.00633 * 179.97438 * 6 5 4 31 31 H 1.09002 * 110.36656 * 37.07754 * 11 10 8 32 32 H 1.08993 * 110.36973 * 274.75348 * 11 10 8 33 33 H 1.08995 * 111.00472 * 278.93584 * 12 11 10 34 34 H 1.08997 * 111.03807 * 155.09810 * 12 11 10 35 35 H 0.96691 * 114.00460 * 61.45642 * 14 13 12 36 36 H 0.97002 * 119.99549 * 180.02562 * 18 17 15 37 37 H 1.08994 * 109.88521 * 61.59815 * 23 10 8 38 38 H 1.09004 * 109.87522 * 300.43243 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 7 1.9853 -0.3916 -3.7000 7 8 1.0116 1.0872 -2.3633 8 6 2.0324 -0.7102 1.2306 9 8 2.3031 -1.8914 1.1809 10 7 2.1807 -0.0330 2.3863 11 6 1.9966 1.4193 2.5608 12 6 1.6640 1.5992 4.0630 13 6 2.5759 0.5264 4.7147 14 8 3.9033 1.0274 4.8855 15 6 2.0059 0.0717 6.0335 16 1 1.6904 -0.9533 6.1608 17 6 1.8872 0.9643 7.0776 18 7 2.2711 2.2126 6.9224 19 14 1.1799 0.4010 8.7122 20 1 0.8261 -1.0389 8.6286 21 1 2.1889 0.6009 9.7834 22 1 -0.0370 1.1929 9.0243 23 6 2.5538 -0.6199 3.6817 24 1 -0.3634 0.5852 0.8448 25 1 -0.3633 0.4389 -0.9292 26 1 -0.3633 -1.0242 0.0846 27 1 3.1263 -0.7995 -1.2055 28 1 1.6054 -1.7199 -1.2950 29 1 2.4892 -1.2155 -3.7906 30 1 1.7284 0.1090 -4.4901 31 1 1.1706 1.7738 1.9443 32 1 2.9142 1.9509 2.3091 33 1 0.6124 1.3890 4.2582 34 1 1.9305 2.5990 4.4058 35 1 3.9610 1.7986 5.4658 36 1 2.1880 2.8405 7.6572 37 1 3.5416 -1.0751 3.6117 38 1 1.8180 -1.3689 3.9748 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = -160.362588 kcal Electronic energy + Delta-G solvation = -21402.913726 eV Core-core repulsion = 18050.685719 eV Total energy + Delta-G solvation = -3352.228007 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45533 -40.38295 -39.01305 -36.11502 -35.13951 -34.61522 -34.17960 -31.42996 -30.11260 -28.87474 -27.23944 -25.03034 -23.54133 -21.74139 -21.18648 -19.91896 -19.17740 -18.64917 -18.01199 -17.33932 -16.97969 -16.84770 -16.45986 -16.08321 -15.94304 -15.51764 -14.86889 -14.64884 -14.46823 -13.92883 -13.83299 -13.57339 -13.29290 -13.21841 -13.12150 -12.90512 -12.67460 -12.46081 -12.25542 -12.21268 -12.07206 -11.98600 -11.28065 -11.03575 -10.78838 -10.61903 -10.53342 -10.14008 -9.63432 -8.24959 -6.38799 1.40619 1.44971 1.54832 1.56099 1.65346 1.95335 2.39758 2.69085 3.00707 3.47003 3.69221 3.89189 3.94430 4.01016 4.16529 4.28727 4.35548 4.42514 4.58338 4.63648 4.66878 4.69032 4.89115 4.94748 5.01894 5.16073 5.24515 5.28543 5.45287 5.51470 5.76440 5.95744 6.07697 6.47014 6.57510 6.65896 7.09577 7.31603 7.37907 7.42184 8.81641 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040547 B = 0.004135 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.382953 B = 6769.918437 C = 6860.127046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.101 0.899 4 C -0.122 4.122 5 C 0.523 3.477 6 N -0.836 5.836 7 O -0.579 6.579 8 C 0.526 3.474 9 O -0.585 6.585 10 N -0.610 5.610 11 C 0.103 3.897 12 C -0.127 4.127 13 C 0.235 3.765 14 O -0.593 6.593 15 C -0.562 4.562 16 H 0.052 0.948 17 C 0.037 3.963 18 N -0.906 5.906 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.129 3.871 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.418 0.582 30 H 0.409 0.591 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.381 0.619 36 H 0.272 0.728 37 H 0.045 0.955 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -1.716 -16.872 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.119 0.881 4 C -0.163 4.163 5 C 0.308 3.692 6 N -0.400 5.400 7 O -0.459 6.459 8 C 0.316 3.684 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.165 4.165 13 C 0.195 3.805 14 O -0.402 6.402 15 C -0.600 4.600 16 H 0.070 0.930 17 C -0.164 4.164 18 N -0.546 5.546 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.201 1.201 23 C 0.006 3.994 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.131 0.869 29 H 0.249 0.751 30 H 0.241 0.759 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.730 -2.081 -17.030 17.244 hybrid contribution -0.148 0.021 1.309 1.318 sum -1.878 -2.060 -15.721 15.966 Atomic orbital electron populations 1.21788 0.91487 1.02324 1.03999 1.20941 0.98826 1.00546 0.90168 0.88132 1.21451 1.04040 1.00564 0.90216 1.20547 0.77938 0.84648 0.86046 1.43682 1.59125 1.29960 1.07266 1.90714 1.41699 1.26178 1.87310 1.20884 0.76847 0.86618 0.84047 1.90624 1.53231 1.17385 1.85377 1.48704 1.67101 1.10077 1.08339 1.22526 1.01601 0.79641 0.98145 1.23098 0.99925 1.01078 0.92430 1.19604 0.80494 0.89106 0.91333 1.86103 1.30449 1.51931 1.71745 1.21761 1.43093 0.96973 0.98166 0.92970 1.25590 0.94439 0.94795 1.01615 1.69710 1.47489 1.03724 1.33635 0.85484 0.78178 0.78353 0.79430 1.20004 1.20441 1.20075 1.21789 0.98547 0.96451 0.82626 0.92258 0.89387 0.92540 0.87473 0.86866 0.75130 0.75920 0.88706 0.91096 0.92267 0.90374 0.76901 0.91869 0.93707 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 8.94 71.98 0.64 -2.91 16 2 C -0.08 -2.25 1.69 -11.54 -0.02 -2.27 16 3 H 0.10 2.69 7.00 -2.39 -0.02 2.68 16 4 C -0.12 -2.56 4.63 29.85 0.14 -2.42 16 5 C 0.52 10.27 7.78 87.66 0.68 10.95 16 6 N -0.84 -8.92 8.87 -173.54 -1.54 -10.46 16 7 O -0.58 -15.82 14.82 -3.02 -0.04 -15.87 16 8 C 0.53 18.83 6.94 87.66 0.61 19.44 16 9 O -0.58 -24.08 16.55 -3.05 -0.05 -24.13 16 10 N -0.61 -23.84 3.33 -811.79 -2.70 -26.54 16 11 C 0.10 3.64 6.36 86.86 0.55 4.19 16 12 C -0.13 -5.42 5.56 31.99 0.18 -5.24 16 13 C 0.23 11.44 0.85 -10.35 -0.01 11.43 16 14 O -0.59 -30.16 13.06 -148.98 -1.95 -32.11 16 15 C -0.56 -29.78 8.22 25.60 0.21 -29.57 16 16 H 0.05 2.82 7.56 -2.91 -0.02 2.79 16 17 C 0.04 1.89 5.29 84.65 0.45 2.34 16 18 N -0.91 -46.16 10.69 21.45 0.23 -45.93 16 19 Si 0.96 41.35 29.54 68.60 2.03 43.37 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 C 0.13 5.92 6.23 86.73 0.54 6.46 16 24 H 0.06 1.54 7.51 -2.39 -0.02 1.52 16 25 H 0.09 2.21 5.88 -2.39 -0.01 2.20 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 27 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.11 2.21 8.03 -2.39 -0.02 2.19 16 29 H 0.42 2.04 8.83 -92.71 -0.82 1.22 16 30 H 0.41 3.47 8.93 -92.71 -0.83 2.64 16 31 H 0.09 2.80 6.76 -2.39 -0.02 2.78 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.60 8.04 -2.39 -0.02 2.58 16 34 H 0.08 3.47 7.64 -2.39 -0.02 3.45 16 35 H 0.38 19.38 7.28 -74.06 -0.54 18.84 16 36 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 37 H 0.04 2.16 8.07 -2.39 -0.02 2.14 16 38 H 0.06 2.86 7.66 -2.38 -0.02 2.84 16 Total: -1.00 -65.19 312.57 -1.13 -66.32 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: -1.07 Total: 32.95 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 3.97 Total: 12.39 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -4.01 Total: -82.93 kcal Atomic # 8 Polarization: -70.06 SS G_CDS: -2.04 Total: -72.10 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -65.19 -1.13 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.045 kcal (2) G-P(sol) polarization free energy of solvation -65.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds