Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.47561 * 2 1 4 4 C 1.53007 * 109.47098 * 119.99759 * 2 1 3 5 5 C 1.50696 * 109.47148 * 294.99820 * 4 2 1 6 6 N 1.34770 * 119.99791 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99832 * 0.02562 * 5 4 2 8 8 C 1.50696 * 109.47388 * 239.99805 * 2 1 3 9 9 O 1.21280 * 120.00536 * 240.00346 * 8 2 1 10 10 N 1.34776 * 120.00145 * 60.00145 * 8 2 1 11 11 C 1.47427 * 125.64535 * 359.97392 * 10 8 2 12 12 C 1.54909 * 104.83126 * 155.91031 * 11 10 8 13 13 C 1.55155 * 101.58319 * 37.00899 * 12 11 10 14 14 O 1.42903 * 110.71521 * 82.86218 * 13 12 11 15 15 C 1.50694 * 110.72177 * 205.95503 * 13 12 11 16 16 H 1.07994 * 119.99866 * 116.15664 * 15 13 12 17 17 C 1.37880 * 120.00331 * 296.15939 * 15 13 12 18 18 N 1.31512 * 119.99598 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00162 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47018 * 90.00096 * 19 17 15 21 21 H 1.48498 * 109.46939 * 209.99953 * 19 17 15 22 22 H 1.48502 * 109.46753 * 330.00017 * 19 17 15 23 23 C 1.47018 * 125.65556 * 180.02562 * 10 8 2 24 24 H 1.09004 * 109.47492 * 59.99828 * 1 2 3 25 25 H 1.09001 * 109.47561 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47359 * 300.00032 * 1 2 3 27 27 H 1.08997 * 109.46717 * 55.00437 * 4 2 1 28 28 H 1.09002 * 109.46736 * 174.99750 * 4 2 1 29 29 H 0.97003 * 120.00467 * 0.02562 * 6 5 4 30 30 H 0.97002 * 119.99969 * 180.02562 * 6 5 4 31 31 H 1.09000 * 110.36621 * 37.07017 * 11 10 8 32 32 H 1.09001 * 110.37051 * 274.75013 * 11 10 8 33 33 H 1.09002 * 111.00456 * 278.93003 * 12 11 10 34 34 H 1.09007 * 111.03839 * 155.10257 * 12 11 10 35 35 H 0.96700 * 114.00311 * 61.45661 * 14 13 12 36 36 H 0.97002 * 119.99961 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.88150 * 61.59780 * 23 10 8 38 38 H 1.09002 * 109.88190 * 300.44225 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 7 1.9844 -0.3918 3.7001 7 8 1.0109 1.0870 2.3633 8 6 2.0323 -0.7104 -1.2304 9 8 2.7295 -1.6965 -1.1192 10 7 1.7068 -0.2500 -2.4545 11 6 0.8706 0.9316 -2.7337 12 6 1.2943 1.3914 -4.1509 13 6 1.5388 0.0328 -4.8592 14 8 0.3093 -0.5161 -5.3379 15 6 2.5256 0.1894 -5.9872 16 1 3.4774 -0.3191 -5.9465 17 6 2.2132 0.9820 -7.0714 18 7 1.0543 1.6017 -7.1207 19 14 3.4368 1.1768 -8.4694 20 1 3.1980 0.1217 -9.4867 21 1 3.2668 2.5136 -9.0933 22 1 4.8182 1.0499 -7.9394 23 6 2.1258 -0.8435 -3.7327 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2056 29 1 2.4883 -1.2157 3.7908 30 1 1.7275 0.1090 4.4902 31 1 1.0689 1.7174 -2.0048 32 1 -0.1851 0.6605 -2.7226 33 1 2.2095 1.9824 -4.1126 34 1 0.4930 1.9474 -4.6379 35 1 -0.1396 0.0363 -5.9925 36 1 0.8344 2.1590 -7.8835 37 1 1.7397 -1.8596 -3.8139 38 1 3.2138 -0.8519 -3.7985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -158.024948 kcal Electronic energy + Delta-G solvation = -21437.252861 eV Core-core repulsion = 18085.126222 eV Total energy + Delta-G solvation = -3352.126640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48285 -40.37310 -38.99346 -36.16241 -35.14763 -34.60926 -34.17663 -31.43249 -30.16928 -28.74957 -27.14308 -25.20338 -23.38496 -21.77438 -21.18755 -20.04485 -19.19788 -18.54905 -17.97246 -17.27133 -16.94675 -16.89113 -16.54675 -16.23662 -15.95489 -15.21838 -14.95860 -14.70239 -14.24072 -14.07453 -13.85401 -13.47404 -13.34193 -13.22554 -13.13713 -12.88675 -12.67166 -12.44492 -12.26988 -12.12657 -12.06526 -11.91998 -11.27172 -10.99966 -10.79715 -10.61586 -10.52752 -10.13868 -9.62477 -8.24661 -6.38566 1.41975 1.44951 1.53500 1.58957 1.65836 1.96216 2.39880 2.69773 3.00939 3.46666 3.70424 3.91001 3.95167 4.00406 4.17400 4.28753 4.34770 4.43495 4.57027 4.65291 4.68278 4.73598 4.91033 4.97707 5.04100 5.17270 5.26110 5.31622 5.45565 5.51827 5.76592 5.96114 6.08124 6.47401 6.58149 6.66060 7.10101 7.31804 7.38397 7.42605 8.81734 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.040426 B = 0.004147 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.462044 B = 6750.078104 C = 6916.082467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.082 4.082 3 H 0.106 0.894 4 C -0.120 4.120 5 C 0.522 3.478 6 N -0.836 5.836 7 O -0.579 6.579 8 C 0.524 3.476 9 O -0.586 6.586 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.129 4.129 13 C 0.235 3.765 14 O -0.593 6.593 15 C -0.563 4.563 16 H 0.052 0.948 17 C 0.037 3.963 18 N -0.906 5.906 19 Si 0.959 3.041 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.274 1.274 23 C 0.129 3.871 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.417 0.583 30 H 0.409 0.591 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.381 0.619 36 H 0.272 0.728 37 H 0.045 0.955 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -0.925 16.966 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.124 0.876 4 C -0.160 4.160 5 C 0.308 3.692 6 N -0.401 5.401 7 O -0.460 6.460 8 C 0.315 3.685 9 O -0.468 6.468 10 N -0.341 5.341 11 C -0.017 4.017 12 C -0.168 4.168 13 C 0.195 3.805 14 O -0.402 6.402 15 C -0.602 4.602 16 H 0.070 0.930 17 C -0.164 4.164 18 N -0.545 5.545 19 Si 0.785 3.215 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.199 1.199 23 C 0.006 3.994 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.249 0.751 30 H 0.241 0.759 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.182 -1.209 17.156 17.200 hybrid contribution 0.643 0.283 -1.204 1.394 sum 0.461 -0.926 15.952 15.985 Atomic orbital electron populations 1.21985 0.91774 1.02584 1.04340 1.20911 0.98811 1.00554 0.90079 0.87647 1.21420 1.04234 1.00236 0.90125 1.20578 0.77897 0.84677 0.86074 1.43683 1.59167 1.29938 1.07271 1.90710 1.41664 1.26263 1.87319 1.20902 0.79481 0.84117 0.84048 1.90623 1.40763 1.28470 1.86907 1.48656 1.50460 1.29805 1.05139 1.22593 0.94566 0.86765 0.97791 1.23132 1.01185 0.98920 0.93524 1.19586 0.82781 0.88417 0.89684 1.86106 1.38417 1.52613 1.63060 1.21742 1.02731 1.30216 1.05466 0.92975 1.25585 0.97148 0.93823 0.99851 1.69699 1.22311 1.30947 1.31565 0.85540 0.79309 0.77545 0.79102 1.20379 1.20220 1.19874 1.21784 0.98282 0.96642 0.82688 0.91490 0.92626 0.89576 0.87169 0.87362 0.75141 0.75948 0.88796 0.90675 0.92387 0.90330 0.76902 0.91859 0.93692 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 8.74 71.98 0.63 -3.16 16 2 C -0.08 -2.21 1.72 -11.54 -0.02 -2.23 16 3 H 0.11 2.81 7.66 -2.39 -0.02 2.80 16 4 C -0.12 -2.53 4.52 29.85 0.13 -2.39 16 5 C 0.52 10.33 7.82 87.66 0.69 11.01 16 6 N -0.84 -9.07 8.87 -173.54 -1.54 -10.61 16 7 O -0.58 -15.88 14.80 -3.03 -0.04 -15.92 16 8 C 0.52 18.71 7.21 87.66 0.63 19.35 16 9 O -0.59 -24.01 16.25 -3.03 -0.05 -24.06 16 10 N -0.61 -23.64 3.32 -811.81 -2.70 -26.34 16 11 C 0.10 3.67 5.13 86.85 0.45 4.12 16 12 C -0.13 -5.51 5.56 31.99 0.18 -5.33 16 13 C 0.24 11.45 0.85 -10.36 -0.01 11.44 16 14 O -0.59 -30.04 13.06 -148.98 -1.95 -31.98 16 15 C -0.56 -29.87 8.22 25.60 0.21 -29.66 16 16 H 0.05 2.81 7.56 -2.91 -0.02 2.78 16 17 C 0.04 1.91 5.29 84.66 0.45 2.36 16 18 N -0.91 -46.13 10.69 21.45 0.23 -45.90 16 19 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 C 0.13 5.91 6.22 86.73 0.54 6.45 16 24 H 0.07 1.73 4.99 -2.39 -0.01 1.71 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.09 2.17 5.95 -2.39 -0.01 2.15 16 27 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.11 2.18 7.96 -2.39 -0.02 2.16 16 29 H 0.42 2.13 8.83 -92.71 -0.82 1.31 16 30 H 0.41 3.53 8.93 -92.71 -0.83 2.70 16 31 H 0.09 2.75 7.36 -2.39 -0.02 2.73 16 32 H 0.08 2.53 7.07 -2.39 -0.02 2.51 16 33 H 0.06 2.55 8.04 -2.39 -0.02 2.53 16 34 H 0.08 3.48 7.64 -2.38 -0.02 3.46 16 35 H 0.38 19.32 7.28 -74.06 -0.54 18.78 16 36 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.04 2.16 8.07 -2.39 -0.02 2.14 16 38 H 0.06 2.84 7.66 -2.39 -0.02 2.82 16 Total: -1.00 -64.94 308.72 -1.22 -66.16 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -1.07 Total: 33.35 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 3.87 Total: 11.96 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -4.01 Total: -82.85 kcal Atomic # 8 Polarization: -69.93 SS G_CDS: -2.04 Total: -71.97 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -64.94 -1.22 -66.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.867 kcal (2) G-P(sol) polarization free energy of solvation -64.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds