Wall clock time and date at job start Mon Mar 30 2020 02:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47046 * 2 1 4 4 C 1.52998 * 109.46910 * 240.00052 * 2 1 3 5 5 C 1.50701 * 109.47135 * 65.00204 * 4 2 1 6 6 N 1.34778 * 120.00374 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00050 * 359.97438 * 5 4 2 8 8 C 1.50697 * 109.47015 * 120.00214 * 2 1 3 9 9 O 1.21279 * 120.00111 * 87.62785 * 8 2 1 10 10 N 1.34778 * 119.99652 * 267.62165 * 8 2 1 11 11 C 1.47291 * 125.79039 * 176.88710 * 10 8 2 12 12 C 1.54323 * 107.30772 * 178.92712 * 11 10 8 13 13 C 1.55163 * 102.94223 * 337.82142 * 12 11 10 14 14 O 1.42900 * 110.99889 * 277.42724 * 13 12 11 15 15 C 1.50699 * 111.03909 * 153.59072 * 13 12 11 16 16 H 1.08001 * 119.99929 * 247.15485 * 15 13 12 17 17 C 1.37871 * 120.00172 * 67.15243 * 15 13 12 18 18 N 1.31518 * 120.00110 * 352.82987 * 17 15 13 19 19 Si 1.86797 * 120.00148 * 172.82730 * 17 15 13 20 20 H 1.48495 * 109.47305 * 94.91959 * 19 17 15 21 21 H 1.48499 * 109.47354 * 214.92352 * 19 17 15 22 22 H 1.48506 * 109.47068 * 334.92119 * 19 17 15 23 23 C 1.47425 * 125.65350 * 356.89152 * 10 8 2 24 24 H 1.08998 * 109.47246 * 174.24269 * 1 2 3 25 25 H 1.09004 * 109.47371 * 294.24557 * 1 2 3 26 26 H 1.08999 * 109.47504 * 54.24325 * 1 2 3 27 27 H 1.08998 * 109.46934 * 184.99912 * 4 2 1 28 28 H 1.09000 * 109.47205 * 305.00002 * 4 2 1 29 29 H 0.96999 * 119.99474 * 359.97438 * 6 5 4 30 30 H 0.96994 * 120.00305 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.85876 * 59.50673 * 11 10 8 32 32 H 1.09002 * 110.00747 * 298.43519 * 11 10 8 33 33 H 1.09000 * 110.72624 * 219.45787 * 12 11 10 34 34 H 1.09000 * 110.72184 * 96.17864 * 12 11 10 35 35 H 0.96700 * 114.00194 * 292.19378 * 14 13 12 36 36 H 0.96994 * 120.00030 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.36253 * 85.25794 * 23 10 8 38 38 H 1.08997 * 110.36503 * 323.05037 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 7 1.9843 -0.3918 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.1935 -1.9124 1.2134 10 7 2.3026 -0.0101 2.3498 11 6 2.7352 -0.5782 3.6380 12 6 2.9486 0.6004 4.6110 13 6 3.1710 1.8033 3.6565 14 8 4.5269 1.8577 3.2085 15 6 2.7704 3.0981 4.3153 16 1 1.9186 3.6505 3.9469 17 6 3.4913 3.5775 5.3883 18 7 4.4383 2.8404 5.9264 19 14 3.1229 5.2740 6.0780 20 1 2.1798 5.1507 7.2183 21 1 4.3844 5.9032 6.5448 22 1 2.5117 6.1168 5.0190 23 6 2.2142 1.4549 2.4891 24 1 -0.3633 -1.0225 -0.1031 25 1 -0.3634 0.4220 0.9370 26 1 -0.3634 0.6005 -0.8339 27 1 3.1263 -0.7994 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.4882 -1.2157 -3.7908 30 1 1.7274 0.1090 -4.4902 31 1 3.6695 -1.1243 3.5067 32 1 1.9672 -1.2463 4.0277 33 1 3.8286 0.4333 5.2322 34 1 2.0637 0.7563 5.2280 35 1 5.1628 2.0725 3.9046 36 1 4.9457 3.1778 6.6811 37 1 1.1942 1.7518 2.7332 38 1 2.5415 1.9437 1.5715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261499912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:25 Heat of formation + Delta-G solvation = -135.454102 kcal Electronic energy + Delta-G solvation = -21509.187884 eV Core-core repulsion = 18158.039990 eV Total energy + Delta-G solvation = -3351.147894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10735 -39.12660 -37.31330 -34.24031 -33.95327 -33.78081 -32.20936 -29.91531 -28.32236 -27.78513 -25.15392 -24.06225 -21.76624 -20.37148 -19.80079 -18.44226 -17.62262 -17.26618 -16.90187 -16.26099 -15.37868 -15.09873 -15.00089 -14.94038 -14.09976 -13.80240 -13.68093 -13.14930 -13.07546 -12.59571 -12.20052 -12.06676 -11.95668 -11.73416 -11.43058 -11.18678 -11.10768 -10.91920 -10.80715 -10.59127 -10.45901 -10.05195 -9.98879 -9.80873 -9.50272 -9.17572 -8.75480 -8.21948 -7.98258 -6.31770 -4.39851 2.56781 3.04990 3.17832 3.26475 3.29064 3.31683 3.72970 4.24108 4.63617 4.93742 4.93851 5.04903 5.14797 5.50236 5.60412 5.67747 5.71376 5.83098 5.98053 6.01176 6.02827 6.18119 6.31055 6.33687 6.38272 6.58823 6.65260 6.91555 6.99182 7.17134 7.29362 7.36255 7.70773 7.94580 8.12880 8.16958 8.61783 8.64140 9.28892 9.34840 10.75080 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.004794 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.577564 B = 5839.482351 C = 6359.789534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.519 3.481 6 N -0.859 5.859 7 O -0.538 6.538 8 C 0.529 3.471 9 O -0.564 6.564 10 N -0.603 5.603 11 C 0.107 3.893 12 C -0.137 4.137 13 C 0.249 3.751 14 O -0.583 6.583 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.073 3.927 18 N -0.893 5.893 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.110 3.890 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.401 0.599 30 H 0.399 0.601 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.383 0.617 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -6.020 -11.738 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.118 0.882 4 C -0.166 4.166 5 C 0.305 3.695 6 N -0.423 5.423 7 O -0.414 6.414 8 C 0.317 3.683 9 O -0.445 6.445 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.175 4.175 13 C 0.208 3.792 14 O -0.393 6.393 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.012 4.012 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.230 0.770 30 H 0.230 0.770 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.001 -6.197 -11.944 14.038 hybrid contribution 0.357 0.816 0.695 1.130 sum -3.644 -5.381 -11.249 12.991 Atomic orbital electron populations 1.21799 0.92259 1.02341 1.03566 1.20968 0.98338 1.00999 0.91085 0.88150 1.21497 1.03446 1.00386 0.91226 1.20711 0.78295 0.85304 0.85207 1.43889 1.60510 1.29633 1.08273 1.90725 1.39534 1.24477 1.86681 1.20124 0.77552 0.86952 0.83647 1.90620 1.55077 1.14659 1.84117 1.48678 1.64851 1.09045 1.10871 1.22102 0.98462 0.97404 0.83500 1.23213 1.02625 0.94293 0.97413 1.19559 0.80150 0.92203 0.87261 1.86095 1.18190 1.93623 1.41344 1.21457 1.14830 1.06605 1.14831 0.91563 1.24991 0.94665 0.97789 0.95502 1.69729 1.22952 1.36600 1.23956 0.86424 0.77917 0.83666 0.79113 1.20563 1.20939 1.19574 1.22538 0.99903 0.78225 1.00572 0.92686 0.92168 0.89847 0.88454 0.87736 0.77045 0.77032 0.92461 0.93003 0.89659 0.91438 0.76632 0.92155 0.90735 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.84 37.16 0.33 -1.69 16 2 C -0.09 -1.43 2.03 -91.77 -0.19 -1.61 16 3 H 0.10 1.65 6.24 -51.93 -0.32 1.32 16 4 C -0.13 -1.56 4.72 -27.88 -0.13 -1.69 16 5 C 0.52 6.22 7.84 -10.98 -0.09 6.14 16 6 N -0.86 -6.51 8.87 31.22 0.28 -6.24 16 7 O -0.54 -8.45 14.81 5.56 0.08 -8.37 16 8 C 0.53 9.95 6.88 -10.99 -0.08 9.87 16 9 O -0.56 -11.74 16.66 5.56 0.09 -11.65 16 10 N -0.60 -12.08 3.34 -170.31 -0.57 -12.64 16 11 C 0.11 2.18 6.89 -2.92 -0.02 2.16 16 12 C -0.14 -3.01 5.51 -24.89 -0.14 -3.15 16 13 C 0.25 5.86 0.89 -89.62 -0.08 5.78 16 14 O -0.58 -14.54 13.18 -35.23 -0.46 -15.01 16 15 C -0.54 -13.62 8.24 -34.44 -0.28 -13.90 16 16 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 17 C 0.07 1.85 5.25 -17.82 -0.09 1.75 16 18 N -0.89 -22.74 10.80 55.43 0.60 -22.14 16 19 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 C 0.11 2.27 5.78 -2.53 -0.01 2.25 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.19 6.08 -51.93 -0.32 0.88 16 27 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.20 8.02 -51.93 -0.42 0.78 16 29 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 30 H 0.40 2.58 8.93 -40.82 -0.36 2.21 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.98 7.66 -51.93 -0.40 1.58 16 34 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 35 H 0.38 9.66 7.25 45.56 0.33 9.99 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 38 H 0.07 1.43 6.80 -51.93 -0.35 1.08 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -30.23 314.04 -5.74 -35.97 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -4.69 Total: 14.64 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.78 Total: 5.91 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.31 Total: -41.02 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.29 Total: -35.03 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.23 -5.74 -35.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.482 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds