Wall clock time and date at job start Mon Mar 30 2020 02:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47046 * 2 1 4 4 C 1.52998 * 109.46910 * 240.00052 * 2 1 3 5 5 C 1.50701 * 109.47135 * 65.00204 * 4 2 1 6 6 N 1.34778 * 120.00374 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00050 * 359.97438 * 5 4 2 8 8 C 1.50697 * 109.47015 * 120.00214 * 2 1 3 9 9 O 1.21279 * 120.00111 * 87.62785 * 8 2 1 10 10 N 1.34778 * 119.99652 * 267.62165 * 8 2 1 11 11 C 1.47291 * 125.79039 * 176.88710 * 10 8 2 12 12 C 1.54323 * 107.30772 * 178.92712 * 11 10 8 13 13 C 1.55163 * 102.94223 * 337.82142 * 12 11 10 14 14 O 1.42900 * 110.99889 * 277.42724 * 13 12 11 15 15 C 1.50699 * 111.03909 * 153.59072 * 13 12 11 16 16 H 1.08001 * 119.99929 * 247.15485 * 15 13 12 17 17 C 1.37871 * 120.00172 * 67.15243 * 15 13 12 18 18 N 1.31518 * 120.00110 * 352.82987 * 17 15 13 19 19 Si 1.86797 * 120.00148 * 172.82730 * 17 15 13 20 20 H 1.48495 * 109.47305 * 94.91959 * 19 17 15 21 21 H 1.48499 * 109.47354 * 214.92352 * 19 17 15 22 22 H 1.48506 * 109.47068 * 334.92119 * 19 17 15 23 23 C 1.47425 * 125.65350 * 356.89152 * 10 8 2 24 24 H 1.08998 * 109.47246 * 174.24269 * 1 2 3 25 25 H 1.09004 * 109.47371 * 294.24557 * 1 2 3 26 26 H 1.08999 * 109.47504 * 54.24325 * 1 2 3 27 27 H 1.08998 * 109.46934 * 184.99912 * 4 2 1 28 28 H 1.09000 * 109.47205 * 305.00002 * 4 2 1 29 29 H 0.96999 * 119.99474 * 359.97438 * 6 5 4 30 30 H 0.96994 * 120.00305 * 179.97438 * 6 5 4 31 31 H 1.09004 * 109.85876 * 59.50673 * 11 10 8 32 32 H 1.09002 * 110.00747 * 298.43519 * 11 10 8 33 33 H 1.09000 * 110.72624 * 219.45787 * 12 11 10 34 34 H 1.09000 * 110.72184 * 96.17864 * 12 11 10 35 35 H 0.96700 * 114.00194 * 292.19378 * 14 13 12 36 36 H 0.96994 * 120.00030 * 179.97438 * 18 17 15 37 37 H 1.09002 * 110.36253 * 85.25794 * 23 10 8 38 38 H 1.08997 * 110.36503 * 323.05037 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 7 1.9843 -0.3918 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7104 1.2304 9 8 2.1935 -1.9124 1.2134 10 7 2.3026 -0.0101 2.3498 11 6 2.7352 -0.5782 3.6380 12 6 2.9486 0.6004 4.6110 13 6 3.1710 1.8033 3.6565 14 8 4.5269 1.8577 3.2085 15 6 2.7704 3.0981 4.3153 16 1 1.9186 3.6505 3.9469 17 6 3.4913 3.5775 5.3883 18 7 4.4383 2.8404 5.9264 19 14 3.1229 5.2740 6.0780 20 1 2.1798 5.1507 7.2183 21 1 4.3844 5.9032 6.5448 22 1 2.5117 6.1168 5.0190 23 6 2.2142 1.4549 2.4891 24 1 -0.3633 -1.0225 -0.1031 25 1 -0.3634 0.4220 0.9370 26 1 -0.3634 0.6005 -0.8339 27 1 3.1263 -0.7994 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.4882 -1.2157 -3.7908 30 1 1.7274 0.1090 -4.4902 31 1 3.6695 -1.1243 3.5067 32 1 1.9672 -1.2463 4.0277 33 1 3.8286 0.4333 5.2322 34 1 2.0637 0.7563 5.2280 35 1 5.1628 2.0725 3.9046 36 1 4.9457 3.1778 6.6811 37 1 1.1942 1.7518 2.7332 38 1 2.5415 1.9437 1.5715 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261499912.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:24 Heat of formation + Delta-G solvation = -159.774516 kcal Electronic energy + Delta-G solvation = -21510.242497 eV Core-core repulsion = 18158.039990 eV Total energy + Delta-G solvation = -3352.202507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42851 -40.36727 -38.98983 -36.02747 -35.17709 -34.62427 -34.15487 -31.59728 -30.05484 -28.85427 -26.97165 -25.47776 -23.21135 -21.70058 -21.33149 -19.89540 -19.12164 -18.68144 -17.94958 -17.52283 -16.93910 -16.67251 -16.53902 -16.25871 -15.80846 -15.18893 -14.92429 -14.81005 -14.36227 -14.13487 -13.74958 -13.62519 -13.46471 -13.24123 -13.00916 -12.86003 -12.61746 -12.45250 -12.29590 -12.21931 -12.02774 -11.87776 -11.27833 -11.03540 -10.78314 -10.64856 -10.54327 -10.11929 -9.60838 -8.22769 -6.37147 1.43761 1.48262 1.56349 1.57900 1.65146 1.98012 2.40986 2.68740 3.01854 3.47699 3.68891 3.80279 3.94349 4.13434 4.19477 4.26317 4.31487 4.36212 4.60890 4.65544 4.66108 4.68982 4.88668 4.92056 5.03368 5.16444 5.25454 5.31664 5.43877 5.53040 5.78761 5.95494 6.05079 6.46765 6.56058 6.68551 7.10751 7.33672 7.37875 7.37984 8.82907 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026123 B = 0.004794 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.577564 B = 5839.482351 C = 6359.789534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.090 0.910 4 C -0.122 4.122 5 C 0.522 3.478 6 N -0.836 5.836 7 O -0.580 6.580 8 C 0.529 3.471 9 O -0.583 6.583 10 N -0.609 5.609 11 C 0.112 3.888 12 C -0.126 4.126 13 C 0.233 3.767 14 O -0.592 6.592 15 C -0.560 4.560 16 H 0.065 0.935 17 C 0.035 3.965 18 N -0.910 5.910 19 Si 0.959 3.041 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.120 3.880 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.418 0.582 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.378 0.622 36 H 0.270 0.730 37 H 0.085 0.915 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -6.243 -12.825 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.108 0.892 4 C -0.162 4.162 5 C 0.307 3.693 6 N -0.400 5.400 7 O -0.460 6.460 8 C 0.319 3.681 9 O -0.464 6.464 10 N -0.340 5.340 11 C -0.010 4.010 12 C -0.164 4.164 13 C 0.193 3.807 14 O -0.400 6.400 15 C -0.598 4.598 16 H 0.083 0.917 17 C -0.166 4.166 18 N -0.549 5.549 19 Si 0.785 3.215 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C -0.003 4.003 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.136 0.864 29 H 0.249 0.751 30 H 0.241 0.759 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.545 -6.460 -13.078 15.278 hybrid contribution 0.567 0.832 1.005 1.423 sum -3.977 -5.628 -12.072 13.901 Atomic orbital electron populations 1.21746 0.91209 1.02931 1.03353 1.20972 0.99113 1.00263 0.90710 0.89217 1.21470 1.03862 1.00664 0.90199 1.20576 0.77977 0.84653 0.86110 1.43661 1.59185 1.29943 1.07194 1.90716 1.41732 1.26226 1.87314 1.20709 0.76668 0.86794 0.83936 1.90606 1.55839 1.15552 1.84436 1.48743 1.65317 1.08754 1.11197 1.21991 0.98720 0.96737 0.83568 1.23003 1.01608 0.94571 0.97258 1.19783 0.79851 0.92296 0.88790 1.86088 1.18883 1.93664 1.41388 1.21718 1.15139 1.07580 1.15336 0.91709 1.25630 0.94607 1.00595 0.95766 1.69806 1.23338 1.37640 1.24117 0.85530 0.77629 0.79991 0.78370 1.20199 1.20834 1.19568 1.22395 0.99645 0.78654 0.99573 0.91707 0.92625 0.89730 0.87798 0.86382 0.75095 0.75928 0.93102 0.91574 0.91319 0.91787 0.77212 0.92044 0.89665 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.84 71.98 0.64 -3.00 16 2 C -0.09 -2.64 2.03 -11.54 -0.02 -2.66 16 3 H 0.09 2.88 6.24 -2.39 -0.01 2.86 16 4 C -0.12 -2.79 4.72 29.85 0.14 -2.65 16 5 C 0.52 11.48 7.84 87.66 0.69 12.17 16 6 N -0.84 -10.45 8.87 -173.53 -1.54 -11.99 16 7 O -0.58 -17.53 14.81 -3.03 -0.04 -17.57 16 8 C 0.53 19.26 6.88 87.66 0.60 19.87 16 9 O -0.58 -23.42 16.66 -3.03 -0.05 -23.47 16 10 N -0.61 -23.90 3.34 -811.12 -2.71 -26.60 16 11 C 0.11 4.51 6.89 86.68 0.60 5.11 16 12 C -0.13 -5.56 5.51 31.78 0.18 -5.38 16 13 C 0.23 10.98 0.89 -10.15 -0.01 10.97 16 14 O -0.59 -29.74 13.18 -148.98 -1.96 -31.70 16 15 C -0.56 -28.21 8.24 25.60 0.21 -28.00 16 16 H 0.06 3.20 7.78 -2.91 -0.02 3.18 16 17 C 0.04 1.76 5.25 84.65 0.44 2.20 16 18 N -0.91 -46.40 10.80 21.45 0.23 -46.17 16 19 Si 0.96 40.29 29.54 68.60 2.03 42.32 16 20 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 C 0.12 4.88 5.78 86.85 0.50 5.38 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.08 2.31 6.08 -2.39 -0.01 2.30 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.12 2.39 8.02 -2.39 -0.02 2.37 16 29 H 0.42 2.66 8.83 -92.71 -0.82 1.84 16 30 H 0.41 4.21 8.93 -92.71 -0.83 3.38 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.07 3.24 7.66 -2.39 -0.02 3.22 16 34 H 0.06 2.83 8.03 -2.39 -0.02 2.81 16 35 H 0.38 19.41 7.25 -74.06 -0.54 18.88 16 36 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 37 H 0.09 3.27 8.02 -2.39 -0.02 3.25 16 38 H 0.07 2.92 6.80 -2.39 -0.02 2.90 16 Total: -1.00 -63.16 314.04 -1.16 -64.31 By element: Atomic # 1 Polarization: 37.95 SS G_CDS: -1.07 Total: 36.88 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 3.96 Total: 14.01 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.01 Total: -84.77 kcal Atomic # 8 Polarization: -70.69 SS G_CDS: -2.06 Total: -72.74 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -63.16 -1.16 -64.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261499912.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.462 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds