Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00044 * 2 1 4 4 C 1.53008 * 109.46833 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47040 * 64.99911 * 4 3 2 6 6 C 1.42901 * 114.00223 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46519 * 330.00207 * 6 5 4 8 8 C 1.53002 * 109.47106 * 89.99424 * 6 5 4 9 9 C 1.50691 * 109.47550 * 210.00022 * 6 5 4 10 10 N 1.30276 * 126.28167 * 315.00395 * 9 6 5 11 11 N 1.28670 * 109.37871 * 179.73294 * 10 9 6 12 12 C 1.30266 * 109.38112 * 0.43802 * 11 10 9 13 13 C 1.50703 * 126.28274 * 179.83370 * 12 11 10 14 14 H 1.08994 * 109.47874 * 179.68894 * 13 12 11 15 15 C 1.53003 * 109.47211 * 59.68343 * 13 12 11 16 16 C 1.50708 * 109.46925 * 299.68712 * 13 12 11 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 O 1.34359 * 107.43747 * 359.56805 * 12 11 10 25 25 H 1.08997 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47181 * 300.00744 * 1 2 3 27 27 H 1.08998 * 109.47016 * 60.00059 * 1 2 3 28 28 H 1.08998 * 109.47550 * 59.99932 * 3 2 1 29 29 H 1.08993 * 109.47009 * 299.99441 * 3 2 1 30 30 H 1.08996 * 109.47167 * 304.99748 * 4 3 2 31 31 H 1.08994 * 109.47033 * 184.99918 * 4 3 2 32 32 H 1.09004 * 109.46792 * 60.00950 * 8 6 5 33 33 H 1.08999 * 109.47329 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47420 * 300.00464 * 8 6 5 35 35 H 1.08998 * 109.46607 * 60.00472 * 15 13 12 36 36 H 1.09003 * 109.47241 * 180.02562 * 15 13 12 37 37 H 1.08996 * 109.47696 * 300.00475 * 15 13 12 38 38 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4194 -1.3221 7 1 5.8784 1.2116 -0.7612 8 6 5.7848 -0.9406 -0.7483 9 6 5.7935 0.4956 -2.7698 10 7 5.2074 -0.0989 -3.7699 11 7 5.8237 0.1934 -4.8609 12 6 6.8294 0.9768 -4.5928 13 6 7.8069 1.5458 -5.5886 14 1 8.5342 2.1692 -5.0686 15 6 7.0532 2.3915 -6.6171 16 6 8.5214 0.4199 -6.2908 17 1 8.2904 -0.6051 -6.0412 18 6 9.4692 0.6984 -7.2526 19 7 10.0924 -0.2842 -7.8658 20 14 9.8683 2.4713 -7.6849 21 1 8.9792 2.9249 -8.7845 22 1 11.2844 2.5677 -8.1215 23 1 9.6585 3.3309 -6.4923 24 8 6.8318 1.1890 -3.2660 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.2887 -1.7327 -1.3091 33 1 6.8651 -1.0626 -0.8265 34 1 5.4874 -0.9956 0.2989 35 1 6.5365 3.2058 -6.1092 36 1 7.7602 2.8027 -7.3377 37 1 6.3259 1.7681 -7.1373 38 1 10.7594 -0.0882 -8.5421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261577178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -49.229838 kcal Electronic energy + Delta-G solvation = -20631.184180 eV Core-core repulsion = 17283.775250 eV Total energy + Delta-G solvation = -3347.408930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.53143 -38.88586 -37.60964 -35.47342 -34.99649 -32.79094 -31.62790 -29.96528 -28.78548 -26.51594 -25.33554 -24.50262 -23.65749 -22.78354 -21.36394 -20.45910 -17.28379 -17.04192 -17.01534 -16.82721 -16.47884 -15.68752 -15.62708 -15.08808 -14.92169 -14.67106 -13.71299 -13.28599 -13.16140 -12.85569 -12.61687 -12.39169 -12.25612 -11.84425 -11.80532 -11.67868 -11.56497 -11.39766 -11.17419 -11.10191 -10.79273 -10.47510 -10.06462 -9.98625 -9.91131 -9.73024 -9.42244 -8.80367 -8.66136 -6.22443 -4.26506 1.77650 2.51642 3.13002 3.17940 3.24685 3.29429 3.49948 3.70753 4.24421 4.33418 4.58873 4.77704 4.86441 4.90473 5.03548 5.04450 5.08081 5.14658 5.20056 5.34383 5.39772 5.45645 5.54210 5.63052 5.82445 6.01022 6.05154 6.14792 6.16961 6.31722 6.56216 6.62290 6.84280 6.96814 7.12490 7.36716 8.28148 8.80799 9.07336 9.32068 10.89780 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038817 B = 0.003607 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.151123 B = 7760.683045 C = 7900.199778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.199 3.801 7 H 0.087 0.913 8 C -0.167 4.167 9 C 0.113 3.887 10 N -0.257 5.257 11 N -0.295 5.295 12 C 0.228 3.772 13 C 0.101 3.899 14 H 0.058 0.942 15 C -0.145 4.145 16 C -0.518 4.518 17 H 0.083 0.917 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.885 3.115 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.265 1.265 24 O -0.232 6.232 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.690 6.057 17.927 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C 0.139 3.861 7 H 0.104 0.896 8 C -0.225 4.225 9 C -0.099 4.099 10 N -0.105 5.105 11 N -0.141 5.141 12 C 0.019 3.981 13 C 0.080 3.920 14 H 0.075 0.925 15 C -0.203 4.203 16 C -0.556 4.556 17 H 0.101 0.899 18 C -0.124 4.124 19 N -0.523 5.523 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.219 1.219 23 H -0.190 1.190 24 O -0.112 6.112 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.413 5.044 16.971 22.212 hybrid contribution 1.049 1.888 0.463 2.209 sum -12.364 6.932 17.434 22.469 Atomic orbital electron populations 1.22743 0.81079 1.02918 0.99780 1.87980 1.19575 1.27070 1.95350 1.22538 0.92077 0.85719 1.00969 1.22668 0.93734 0.97528 0.87641 1.88117 1.19495 1.81560 1.38128 1.19770 0.82975 0.99297 0.84039 0.89562 1.22249 1.02547 0.96223 1.01470 1.27107 0.87934 0.95970 0.98925 1.74333 1.22820 1.18791 0.94542 1.74480 1.06707 1.14252 1.18637 1.28877 0.96474 0.93917 0.78839 1.18082 0.89202 0.96627 0.88056 0.92450 1.22168 1.00558 0.98526 0.99018 1.20656 1.20927 0.92638 1.21368 0.89865 1.24870 0.95048 0.97383 0.95116 1.69851 1.25564 1.31554 1.25286 0.86891 0.77001 0.85211 0.79476 1.19936 1.21880 1.18951 1.84751 1.44573 1.57555 1.24326 0.89527 0.94334 0.93936 0.91705 0.92203 0.91846 0.91443 0.90284 0.90846 0.90832 0.94588 0.92510 0.91101 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.36 10.67 -40.09 -0.43 -4.79 16 3 C 0.06 0.58 6.32 37.16 0.23 0.82 16 4 C 0.06 0.58 6.13 37.16 0.23 0.81 16 5 O -0.35 -5.02 9.94 -40.09 -0.40 -5.42 16 6 C 0.20 2.74 3.27 -27.89 -0.09 2.65 16 7 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 8 C -0.17 -2.00 9.51 37.16 0.35 -1.65 16 9 C 0.11 2.16 7.36 -12.94 -0.10 2.07 16 10 N -0.26 -5.77 12.22 32.55 0.40 -5.37 16 11 N -0.30 -7.23 12.22 32.55 0.40 -6.84 16 12 C 0.23 5.33 6.92 -12.94 -0.09 5.24 16 13 C 0.10 2.40 2.36 -92.92 -0.22 2.18 16 14 H 0.06 1.31 7.20 -51.93 -0.37 0.93 16 15 C -0.15 -3.13 8.66 37.16 0.32 -2.81 16 16 C -0.52 -14.51 9.13 -34.44 -0.31 -14.82 16 17 H 0.08 2.61 7.98 -52.49 -0.42 2.19 16 18 C 0.08 2.22 5.45 -17.82 -0.10 2.13 16 19 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 20 Si 0.88 20.65 24.37 -169.99 -4.14 16.51 16 21 H -0.27 -6.17 6.87 56.52 0.39 -5.78 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 24 O -0.23 -4.82 10.87 5.40 0.06 -4.76 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.22 3.27 -51.93 -0.17 1.05 16 37 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -33.62 322.53 -2.73 -36.34 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -5.59 Total: -2.84 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 1.34 Total: -2.02 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 1.57 Total: -37.87 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.77 Total: -14.97 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.62 -2.73 -36.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.886 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds