Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00044 * 2 1 4 4 C 1.53008 * 109.46833 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47040 * 64.99911 * 4 3 2 6 6 C 1.42901 * 114.00223 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.46519 * 330.00207 * 6 5 4 8 8 C 1.53002 * 109.47106 * 89.99424 * 6 5 4 9 9 C 1.50691 * 109.47550 * 210.00022 * 6 5 4 10 10 N 1.30276 * 126.28167 * 315.00395 * 9 6 5 11 11 N 1.28670 * 109.37871 * 179.73294 * 10 9 6 12 12 C 1.30266 * 109.38112 * 0.43802 * 11 10 9 13 13 C 1.50703 * 126.28274 * 179.83370 * 12 11 10 14 14 H 1.08994 * 109.47874 * 179.68894 * 13 12 11 15 15 C 1.53003 * 109.47211 * 59.68343 * 13 12 11 16 16 C 1.50708 * 109.46925 * 299.68712 * 13 12 11 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 13 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 13 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 O 1.34359 * 107.43747 * 359.56805 * 12 11 10 25 25 H 1.08997 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47181 * 300.00744 * 1 2 3 27 27 H 1.08998 * 109.47016 * 60.00059 * 1 2 3 28 28 H 1.08998 * 109.47550 * 59.99932 * 3 2 1 29 29 H 1.08993 * 109.47009 * 299.99441 * 3 2 1 30 30 H 1.08996 * 109.47167 * 304.99748 * 4 3 2 31 31 H 1.08994 * 109.47033 * 184.99918 * 4 3 2 32 32 H 1.09004 * 109.46792 * 60.00950 * 8 6 5 33 33 H 1.08999 * 109.47329 * 179.97438 * 8 6 5 34 34 H 1.08997 * 109.47420 * 300.00464 * 8 6 5 35 35 H 1.08998 * 109.46607 * 60.00472 * 15 13 12 36 36 H 1.09003 * 109.47241 * 180.02562 * 15 13 12 37 37 H 1.08996 * 109.47696 * 300.00475 * 15 13 12 38 38 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4194 -1.3221 7 1 5.8784 1.2116 -0.7612 8 6 5.7848 -0.9406 -0.7483 9 6 5.7935 0.4956 -2.7698 10 7 5.2074 -0.0989 -3.7699 11 7 5.8237 0.1934 -4.8609 12 6 6.8294 0.9768 -4.5928 13 6 7.8069 1.5458 -5.5886 14 1 8.5342 2.1692 -5.0686 15 6 7.0532 2.3915 -6.6171 16 6 8.5214 0.4199 -6.2908 17 1 8.2904 -0.6051 -6.0412 18 6 9.4692 0.6984 -7.2526 19 7 10.0924 -0.2842 -7.8658 20 14 9.8683 2.4713 -7.6849 21 1 8.9792 2.9249 -8.7845 22 1 11.2844 2.5677 -8.1215 23 1 9.6585 3.3309 -6.4923 24 8 6.8318 1.1890 -3.2660 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5684 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.2887 -1.7327 -1.3091 33 1 6.8651 -1.0626 -0.8265 34 1 5.4874 -0.9956 0.2989 35 1 6.5365 3.2058 -6.1092 36 1 7.7602 2.8027 -7.3377 37 1 6.3259 1.7681 -7.1373 38 1 10.7594 -0.0882 -8.5421 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261577178.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = -78.704197 kcal Electronic energy + Delta-G solvation = -20632.462284 eV Core-core repulsion = 17283.775250 eV Total energy + Delta-G solvation = -3348.687034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.21564 -39.77447 -38.41950 -37.18389 -36.85907 -34.19464 -33.37952 -30.84818 -30.24259 -27.30689 -27.16170 -25.86150 -25.43657 -23.55937 -22.71974 -22.25440 -18.96346 -18.46883 -18.37274 -17.98914 -17.66857 -17.13029 -16.80382 -16.30914 -15.89102 -15.68927 -15.40693 -14.99998 -14.22766 -14.17046 -13.88272 -13.53066 -13.44763 -13.35261 -13.20571 -13.00711 -12.87988 -12.71374 -12.66711 -12.35165 -12.19438 -11.99596 -11.76343 -11.49732 -11.43932 -10.89785 -10.81338 -10.61252 -10.43638 -8.36813 -6.48533 0.16554 1.04750 1.34942 1.39311 1.42326 1.51005 2.28737 2.60817 2.86707 2.91937 2.96577 3.60083 3.68456 3.87711 4.09779 4.14674 4.23337 4.26960 4.43134 4.43556 4.45256 4.48825 4.52484 4.57094 4.58885 4.64565 4.78702 4.81964 4.84229 4.86012 4.87983 5.16314 5.32639 5.39871 6.01979 6.11152 6.27228 6.54774 7.14813 7.37319 8.79917 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.038817 B = 0.003607 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.151123 B = 7760.683045 C = 7900.199778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.058 3.942 4 C 0.051 3.949 5 O -0.385 6.385 6 C 0.197 3.803 7 H 0.128 0.872 8 C -0.163 4.163 9 C 0.138 3.862 10 N -0.299 5.299 11 N -0.327 5.327 12 C 0.213 3.787 13 C 0.102 3.898 14 H 0.077 0.923 15 C -0.140 4.140 16 C -0.529 4.529 17 H 0.027 0.973 18 C 0.022 3.978 19 N -0.940 5.940 20 Si 0.953 3.047 21 H -0.257 1.257 22 H -0.291 1.291 23 H -0.231 1.231 24 O -0.227 6.227 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 9.054 20.212 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.018 4.018 4 C -0.024 4.024 5 O -0.304 6.304 6 C 0.138 3.862 7 H 0.146 0.854 8 C -0.221 4.221 9 C -0.075 4.075 10 N -0.145 5.145 11 N -0.172 5.172 12 C 0.002 3.998 13 C 0.082 3.918 14 H 0.095 0.905 15 C -0.198 4.198 16 C -0.567 4.567 17 H 0.045 0.955 18 C -0.177 4.177 19 N -0.578 5.578 20 Si 0.777 3.223 21 H -0.183 1.183 22 H -0.218 1.218 23 H -0.154 1.154 24 O -0.107 6.107 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.798 8.034 19.282 25.035 hybrid contribution 1.053 0.821 -0.096 1.338 sum -12.746 8.855 19.186 24.677 Atomic orbital electron populations 1.22885 0.79777 1.03561 1.00756 1.87928 1.21236 1.28651 1.95586 1.22737 0.91955 0.85090 1.02027 1.23046 0.94003 0.99075 0.86262 1.88091 1.19258 1.82350 1.40729 1.20241 0.83752 1.01598 0.80648 0.85414 1.22258 1.02448 0.94296 1.03063 1.28424 0.85800 0.92698 1.00566 1.74268 1.24248 1.20944 0.95007 1.74400 1.07626 1.14868 1.20272 1.28704 0.96633 0.94628 0.79858 1.18007 0.89694 0.95533 0.88607 0.90509 1.22084 1.00293 0.98898 0.98524 1.20737 1.21941 0.91693 1.22363 0.95508 1.25864 0.94392 1.02900 0.94499 1.70015 1.26660 1.34716 1.26374 0.85797 0.76838 0.78911 0.80775 1.18283 1.21847 1.15397 1.84750 1.45103 1.57703 1.23188 0.89201 0.92119 0.94136 0.88339 0.93326 0.90095 0.88643 0.92928 0.90566 0.87159 0.91021 0.92006 0.92645 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.91 10.67 -144.34 -1.54 -10.45 16 3 C 0.06 0.92 6.32 71.98 0.45 1.38 16 4 C 0.05 0.81 6.13 71.98 0.44 1.25 16 5 O -0.38 -10.13 9.94 -144.34 -1.43 -11.56 16 6 C 0.20 4.95 3.27 29.85 0.10 5.05 16 7 H 0.13 2.16 7.79 -2.39 -0.02 2.14 16 8 C -0.16 -3.57 9.51 71.98 0.68 -2.89 16 9 C 0.14 5.18 7.36 88.34 0.65 5.83 16 10 N -0.30 -13.67 12.22 -165.51 -2.02 -15.69 16 11 N -0.33 -16.46 12.22 -165.51 -2.02 -18.49 16 12 C 0.21 9.97 6.92 88.34 0.61 10.58 16 13 C 0.10 4.79 2.36 -12.28 -0.03 4.76 16 14 H 0.08 3.30 7.20 -2.39 -0.02 3.29 16 15 C -0.14 -5.78 8.66 71.98 0.62 -5.16 16 16 C -0.53 -30.58 9.13 25.60 0.23 -30.35 16 17 H 0.03 1.79 7.98 -2.92 -0.02 1.77 16 18 C 0.02 1.27 5.45 84.65 0.46 1.73 16 19 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 20 Si 0.95 41.37 24.37 68.60 1.67 43.04 16 21 H -0.26 -10.52 6.87 99.48 0.68 -9.84 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.23 -8.76 6.53 99.48 0.65 -8.11 16 24 O -0.23 -9.21 10.87 -3.60 -0.04 -9.25 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.99 7.87 -2.39 -0.02 0.97 16 31 H 0.10 0.96 8.08 -2.39 -0.02 0.94 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.62 7.87 -2.39 -0.02 1.60 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.46 3.27 -2.39 -0.01 2.45 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -77.64 322.53 1.36 -76.28 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.97 Total: 9.92 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 5.48 Total: -6.17 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -3.75 Total: -91.80 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -3.01 Total: -31.26 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.67 Total: 43.04 kcal Total: -77.64 1.36 -76.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577178.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.426 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds