Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99991 * 2 1 4 4 C 1.53000 * 109.46976 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47114 * 65.00207 * 4 3 2 6 6 C 1.42899 * 114.00306 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47007 * 330.00370 * 6 5 4 8 8 C 1.53002 * 109.46824 * 90.00273 * 6 5 4 9 9 C 1.50702 * 109.47420 * 209.99912 * 6 5 4 10 10 N 1.30280 * 126.28215 * 314.98125 * 9 6 5 11 11 N 1.28661 * 109.37971 * 179.97438 * 10 9 6 12 12 C 1.30272 * 109.38222 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.28108 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47152 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46912 * 300.02352 * 13 12 11 16 16 C 1.50699 * 109.47227 * 60.02241 * 13 12 11 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99969 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99840 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47167 * 89.99961 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00109 * 20 18 16 23 23 H 1.48497 * 109.47377 * 330.00144 * 20 18 16 24 24 O 1.34357 * 107.43672 * 0.23873 * 12 11 10 25 25 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47528 * 300.00331 * 1 2 3 27 27 H 1.09001 * 109.46969 * 60.00514 * 1 2 3 28 28 H 1.09005 * 109.47232 * 60.00172 * 3 2 1 29 29 H 1.08997 * 109.47507 * 299.99877 * 3 2 1 30 30 H 1.08998 * 109.47572 * 305.00204 * 4 3 2 31 31 H 1.09006 * 109.47202 * 184.99488 * 4 3 2 32 32 H 1.09002 * 109.46757 * 299.99829 * 8 6 5 33 33 H 1.08998 * 109.47223 * 59.99699 * 8 6 5 34 34 H 1.08997 * 109.46965 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99742 * 15 13 12 36 36 H 1.08992 * 109.47399 * 59.99914 * 15 13 12 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 0.96999 * 119.99716 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3221 7 1 5.8783 1.2117 -0.7613 8 6 5.7847 -0.9406 -0.7486 9 6 5.7934 0.4958 -2.7699 10 7 5.2076 -0.0990 -3.7701 11 7 5.8268 0.1894 -4.8604 12 6 6.8283 0.9784 -4.5931 13 6 7.8055 1.5479 -5.5891 14 1 8.5323 2.1718 -5.0690 15 6 8.5316 0.4052 -6.3017 16 6 7.0625 2.3802 -6.6022 17 1 5.9900 2.4858 -6.5321 18 6 7.7519 3.0059 -7.6191 19 7 7.1036 3.7327 -8.5029 20 14 9.6069 2.8226 -7.7407 21 1 9.9337 1.6426 -8.5808 22 1 10.1857 4.0439 -8.3560 23 1 10.1760 2.6357 -6.3819 24 8 6.8338 1.1865 -3.2657 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0901 32 1 5.4873 -0.9956 0.2986 33 1 5.2885 -1.7326 -1.3094 34 1 6.8651 -1.0621 -0.8259 35 1 9.0690 -0.1968 -5.5690 36 1 7.8048 -0.2188 -6.8218 37 1 9.2387 0.8171 -7.0218 38 1 7.5886 4.1732 -9.2182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261577180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = -49.212595 kcal Electronic energy + Delta-G solvation = -20647.931632 eV Core-core repulsion = 17300.523450 eV Total energy + Delta-G solvation = -3347.408182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.53041 -38.85617 -37.57534 -35.47299 -34.99581 -32.78991 -31.62855 -29.93692 -28.79288 -26.47512 -25.33968 -24.50372 -23.65651 -22.74519 -21.36303 -20.45620 -17.35762 -17.02183 -16.91853 -16.82941 -16.38497 -15.73165 -15.58430 -15.08073 -14.95622 -14.63579 -13.69215 -13.30008 -13.12205 -12.85440 -12.61832 -12.38054 -12.25900 -11.89775 -11.76941 -11.69220 -11.54408 -11.36829 -11.17155 -11.09837 -10.79199 -10.47607 -10.06570 -9.95985 -9.87186 -9.71292 -9.41895 -8.81369 -8.65852 -6.22325 -4.26405 1.76721 2.54353 3.12960 3.17808 3.24658 3.29442 3.54138 3.72143 4.24442 4.33474 4.61077 4.79933 4.87921 4.92593 5.04450 5.07613 5.11720 5.18512 5.25190 5.34155 5.41785 5.49448 5.50286 5.61130 5.82300 6.00836 6.01072 6.14263 6.15085 6.31687 6.56179 6.62372 6.87660 6.99911 7.12463 7.36791 8.28301 8.81118 9.07508 9.32064 10.89890 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.003803 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.086313 B = 7360.105909 C = 7779.932307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.198 3.802 7 H 0.087 0.913 8 C -0.166 4.166 9 C 0.112 3.888 10 N -0.257 5.257 11 N -0.295 5.295 12 C 0.228 3.772 13 C 0.101 3.899 14 H 0.058 0.942 15 C -0.145 4.145 16 C -0.518 4.518 17 H 0.083 0.917 18 C 0.079 3.921 19 N -0.886 5.886 20 Si 0.885 3.115 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.264 1.264 24 O -0.232 6.232 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -4.996 19.677 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.272 6.272 6 C 0.138 3.862 7 H 0.105 0.895 8 C -0.224 4.224 9 C -0.100 4.100 10 N -0.105 5.105 11 N -0.141 5.141 12 C 0.019 3.981 13 C 0.081 3.919 14 H 0.075 0.925 15 C -0.203 4.203 16 C -0.556 4.556 17 H 0.101 0.899 18 C -0.124 4.124 19 N -0.522 5.522 20 Si 0.714 3.286 21 H -0.199 1.199 22 H -0.219 1.219 23 H -0.189 1.189 24 O -0.112 6.112 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.323 -5.826 18.694 20.291 hybrid contribution 1.614 1.130 0.584 2.055 sum -3.709 -4.696 19.278 20.185 Atomic orbital electron populations 1.22742 0.81076 1.02864 0.99845 1.87965 1.19588 1.27136 1.95369 1.22545 0.92041 0.85686 1.01092 1.22674 0.93796 0.97571 0.87494 1.88130 1.19355 1.81525 1.38201 1.19769 0.83173 0.99165 0.84053 0.89532 1.22239 1.02243 0.96311 1.01558 1.27124 0.88077 0.95834 0.98929 1.74329 1.22320 1.19311 0.94514 1.74480 1.05791 1.15433 1.18367 1.28882 0.97214 0.93402 0.78625 1.18081 0.90517 0.94056 0.89289 0.92456 1.22172 1.00027 0.98390 0.99703 1.20652 0.96133 1.29316 1.09482 0.89885 1.24870 0.98432 0.94280 0.94840 1.69853 1.36220 1.31335 1.14837 0.86886 0.85674 0.77044 0.78950 1.19927 1.21886 1.18945 1.84751 1.44416 1.57845 1.24197 0.89575 0.94338 0.93867 0.91677 0.92059 0.91920 0.91355 0.90825 0.90331 0.91067 0.94569 0.91101 0.92528 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.54 10.67 -40.09 -0.43 -4.97 16 3 C 0.06 0.62 6.32 37.16 0.23 0.85 16 4 C 0.06 0.62 6.13 37.16 0.23 0.84 16 5 O -0.35 -5.19 9.94 -40.09 -0.40 -5.59 16 6 C 0.20 2.74 3.27 -27.88 -0.09 2.64 16 7 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 8 C -0.17 -1.86 9.51 37.16 0.35 -1.50 16 9 C 0.11 2.16 7.36 -12.94 -0.10 2.06 16 10 N -0.26 -5.77 12.22 32.55 0.40 -5.37 16 11 N -0.30 -7.24 12.22 32.55 0.40 -6.84 16 12 C 0.23 5.33 6.92 -12.94 -0.09 5.24 16 13 C 0.10 2.41 2.36 -92.92 -0.22 2.19 16 14 H 0.06 1.31 7.20 -51.93 -0.37 0.93 16 15 C -0.15 -3.12 8.65 37.16 0.32 -2.80 16 16 C -0.52 -14.56 9.13 -34.44 -0.31 -14.88 16 17 H 0.08 2.63 7.98 -52.49 -0.42 2.21 16 18 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 19 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 20 Si 0.89 20.65 24.37 -169.99 -4.14 16.51 16 21 H -0.27 -6.16 6.87 56.52 0.39 -5.77 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.26 -5.76 6.53 56.52 0.37 -5.39 16 24 O -0.23 -4.82 10.87 5.41 0.06 -4.77 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 31 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 32 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.22 3.27 -51.93 -0.17 1.05 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -33.76 322.53 -2.73 -36.49 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.59 Total: -2.78 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 1.34 Total: -1.84 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 1.57 Total: -37.91 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.77 Total: -15.32 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.14 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.76 -2.73 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.727 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds