Wall clock time and date at job start Mon Mar 30 2020 02:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 113.99991 * 2 1 4 4 C 1.53000 * 109.46976 * 179.97438 * 3 2 1 5 5 O 1.42900 * 109.47114 * 65.00207 * 4 3 2 6 6 C 1.42899 * 114.00306 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47007 * 330.00370 * 6 5 4 8 8 C 1.53002 * 109.46824 * 90.00273 * 6 5 4 9 9 C 1.50702 * 109.47420 * 209.99912 * 6 5 4 10 10 N 1.30280 * 126.28215 * 314.98125 * 9 6 5 11 11 N 1.28661 * 109.37971 * 179.97438 * 10 9 6 12 12 C 1.30272 * 109.38222 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.28108 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47152 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46912 * 300.02352 * 13 12 11 16 16 C 1.50699 * 109.47227 * 60.02241 * 13 12 11 17 17 H 1.07999 * 120.00019 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99969 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99840 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47167 * 89.99961 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00109 * 20 18 16 23 23 H 1.48497 * 109.47377 * 330.00144 * 20 18 16 24 24 O 1.34357 * 107.43672 * 0.23873 * 12 11 10 25 25 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47528 * 300.00331 * 1 2 3 27 27 H 1.09001 * 109.46969 * 60.00514 * 1 2 3 28 28 H 1.09005 * 109.47232 * 60.00172 * 3 2 1 29 29 H 1.08997 * 109.47507 * 299.99877 * 3 2 1 30 30 H 1.08998 * 109.47572 * 305.00204 * 4 3 2 31 31 H 1.09006 * 109.47202 * 184.99488 * 4 3 2 32 32 H 1.09002 * 109.46757 * 299.99829 * 8 6 5 33 33 H 1.08998 * 109.47223 * 59.99699 * 8 6 5 34 34 H 1.08997 * 109.46965 * 180.02562 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99742 * 15 13 12 36 36 H 1.08992 * 109.47399 * 59.99914 * 15 13 12 37 37 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 38 38 H 0.96999 * 119.99716 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3221 7 1 5.8783 1.2117 -0.7613 8 6 5.7847 -0.9406 -0.7486 9 6 5.7934 0.4958 -2.7699 10 7 5.2076 -0.0990 -3.7701 11 7 5.8268 0.1894 -4.8604 12 6 6.8283 0.9784 -4.5931 13 6 7.8055 1.5479 -5.5891 14 1 8.5323 2.1718 -5.0690 15 6 8.5316 0.4052 -6.3017 16 6 7.0625 2.3802 -6.6022 17 1 5.9900 2.4858 -6.5321 18 6 7.7519 3.0059 -7.6191 19 7 7.1036 3.7327 -8.5029 20 14 9.6069 2.8226 -7.7407 21 1 9.9337 1.6426 -8.5808 22 1 10.1857 4.0439 -8.3560 23 1 10.1760 2.6357 -6.3819 24 8 6.8338 1.1865 -3.2657 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8508 0.5684 0.8426 31 1 3.9785 2.1765 0.0901 32 1 5.4873 -0.9956 0.2986 33 1 5.2885 -1.7326 -1.3094 34 1 6.8651 -1.0621 -0.8259 35 1 9.0690 -0.1968 -5.5690 36 1 7.8048 -0.2188 -6.8218 37 1 9.2387 0.8171 -7.0218 38 1 7.5886 4.1732 -9.2182 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261577180.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:09 Heat of formation + Delta-G solvation = -78.879831 kcal Electronic energy + Delta-G solvation = -20649.218100 eV Core-core repulsion = 17300.523450 eV Total energy + Delta-G solvation = -3348.694650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.21446 -39.78152 -38.42994 -37.18336 -36.85944 -34.19579 -33.38110 -30.86276 -30.23029 -27.30838 -27.17269 -25.85065 -25.43232 -23.57821 -22.71660 -22.24934 -19.02520 -18.55426 -18.14364 -18.04192 -17.65429 -17.23308 -16.79201 -16.33018 -15.89431 -15.68027 -15.42117 -14.98831 -14.23590 -14.16222 -13.78475 -13.60108 -13.43932 -13.38885 -13.20055 -13.00747 -12.85821 -12.70648 -12.64342 -12.37201 -12.20106 -12.00576 -11.76162 -11.49109 -11.43753 -10.87799 -10.84008 -10.63121 -10.43656 -8.37164 -6.49078 0.15449 1.07496 1.34943 1.39615 1.41535 1.51151 2.28627 2.61481 2.85005 2.91113 2.96200 3.60657 3.68793 3.88651 4.08520 4.14679 4.21918 4.27046 4.42414 4.42788 4.45770 4.49643 4.53169 4.55892 4.58061 4.65497 4.79802 4.81626 4.84811 4.86549 4.86776 5.18802 5.32837 5.40381 6.01921 6.10651 6.24883 6.54138 7.14249 7.37523 8.79632 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031380 B = 0.003803 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.086313 B = 7360.105909 C = 7779.932307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.057 3.943 4 C 0.053 3.947 5 O -0.389 6.389 6 C 0.194 3.806 7 H 0.125 0.875 8 C -0.159 4.159 9 C 0.138 3.862 10 N -0.298 5.298 11 N -0.327 5.327 12 C 0.212 3.788 13 C 0.102 3.898 14 H 0.077 0.923 15 C -0.140 4.140 16 C -0.530 4.530 17 H 0.024 0.976 18 C 0.022 3.978 19 N -0.940 5.940 20 Si 0.954 3.046 21 H -0.257 1.257 22 H -0.291 1.291 23 H -0.230 1.230 24 O -0.228 6.228 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -5.387 22.517 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.019 4.019 4 C -0.023 4.023 5 O -0.308 6.308 6 C 0.135 3.865 7 H 0.142 0.858 8 C -0.216 4.216 9 C -0.075 4.075 10 N -0.145 5.145 11 N -0.172 5.172 12 C 0.002 3.998 13 C 0.082 3.918 14 H 0.095 0.905 15 C -0.198 4.198 16 C -0.568 4.568 17 H 0.043 0.957 18 C -0.177 4.177 19 N -0.578 5.578 20 Si 0.778 3.222 21 H -0.182 1.182 22 H -0.219 1.219 23 H -0.153 1.153 24 O -0.108 6.108 25 H 0.110 0.890 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.180 -6.243 21.562 22.671 hybrid contribution 0.715 1.283 -0.180 1.480 sum -2.465 -4.960 21.382 22.088 Atomic orbital electron populations 1.22893 0.79785 1.03649 1.00686 1.87913 1.21219 1.28472 1.95573 1.22730 0.92129 0.85153 1.01875 1.23027 0.93882 0.99006 0.86348 1.88094 1.19605 1.82295 1.40816 1.20320 0.83569 1.02001 0.80657 0.85768 1.22237 1.02769 0.93732 1.02890 1.28456 0.85886 0.92588 1.00597 1.74263 1.23626 1.21609 0.94953 1.74399 1.06479 1.16379 1.19928 1.28709 0.97387 0.94095 0.79654 1.18006 0.90548 0.94627 0.88634 0.90521 1.22085 0.99710 0.97639 1.00362 1.20732 0.93928 1.30723 1.11439 0.95717 1.25879 1.04658 0.93318 0.93837 1.70019 1.38974 1.32819 1.15961 0.85778 0.78027 0.77489 0.80912 1.18213 1.21863 1.15348 1.84750 1.45012 1.57922 1.23078 0.88951 0.92075 0.94400 0.88273 0.93797 0.89644 0.89036 0.87417 0.92653 0.89845 0.90857 0.92632 0.92051 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.38 10.67 -144.34 -1.54 -10.92 16 3 C 0.06 1.03 6.32 71.98 0.45 1.49 16 4 C 0.05 0.92 6.13 71.98 0.44 1.36 16 5 O -0.39 -10.83 9.94 -144.34 -1.43 -12.26 16 6 C 0.19 4.88 3.27 29.85 0.10 4.98 16 7 H 0.12 2.18 7.79 -2.39 -0.02 2.16 16 8 C -0.16 -3.10 9.51 71.98 0.68 -2.42 16 9 C 0.14 5.17 7.36 88.34 0.65 5.82 16 10 N -0.30 -13.67 12.22 -165.50 -2.02 -15.69 16 11 N -0.33 -16.49 12.22 -165.51 -2.02 -18.51 16 12 C 0.21 9.97 6.92 88.34 0.61 10.58 16 13 C 0.10 4.80 2.36 -12.29 -0.03 4.78 16 14 H 0.08 3.30 7.20 -2.39 -0.02 3.28 16 15 C -0.14 -5.74 8.65 71.98 0.62 -5.12 16 16 C -0.53 -30.79 9.13 25.60 0.23 -30.56 16 17 H 0.02 1.66 7.98 -2.91 -0.02 1.64 16 18 C 0.02 1.25 5.45 84.65 0.46 1.71 16 19 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 20 Si 0.95 41.39 24.37 68.60 1.67 43.06 16 21 H -0.26 -10.46 6.87 99.48 0.68 -9.78 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.23 -8.72 6.53 99.48 0.65 -8.07 16 24 O -0.23 -9.23 10.87 -3.57 -0.04 -9.26 16 25 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.09 7.87 -2.39 -0.02 1.07 16 31 H 0.09 1.14 8.08 -2.38 -0.02 1.12 16 32 H 0.11 1.39 7.87 -2.39 -0.02 1.38 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 2.43 3.27 -2.39 -0.01 2.42 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -78.23 322.53 1.36 -76.87 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.97 Total: 10.21 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.48 Total: -5.72 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -3.75 Total: -91.98 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -3.01 Total: -32.44 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.67 Total: 43.06 kcal Total: -78.23 1.36 -76.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577180.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.006 kcal (2) G-P(sol) polarization free energy of solvation -78.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds