Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99360 * 2 1 4 4 C 1.53008 * 109.47032 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46864 * 64.99820 * 4 3 2 6 6 C 1.42902 * 113.99592 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47163 * 30.00243 * 6 5 4 8 8 C 1.52997 * 109.47324 * 270.00199 * 6 5 4 9 9 C 1.50707 * 109.46961 * 149.99871 * 6 5 4 10 10 N 1.30268 * 126.27743 * 44.97772 * 9 6 5 11 11 N 1.28669 * 109.38166 * 179.97438 * 10 9 6 12 12 C 1.30275 * 109.37655 * 0.02562 * 11 10 9 13 13 C 1.50702 * 126.28225 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47329 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46988 * 60.02660 * 13 12 11 16 16 C 1.50699 * 109.47339 * 300.02741 * 13 12 11 17 17 H 1.07996 * 120.00204 * 94.93410 * 16 13 12 18 18 C 1.37881 * 119.99513 * 274.93865 * 16 13 12 19 19 N 1.31514 * 120.00415 * 6.43147 * 18 16 13 20 20 Si 1.86798 * 119.99559 * 186.44116 * 18 16 13 21 21 H 1.48504 * 109.47167 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47162 * 299.99347 * 20 18 16 23 23 H 1.48502 * 109.47559 * 59.99746 * 20 18 16 24 24 O 1.34357 * 126.28459 * 225.26123 * 9 6 5 25 25 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47119 * 299.99808 * 1 2 3 27 27 H 1.08996 * 109.47475 * 60.00239 * 1 2 3 28 28 H 1.09003 * 109.47338 * 60.00611 * 3 2 1 29 29 H 1.09003 * 109.47613 * 299.99851 * 3 2 1 30 30 H 1.09006 * 109.46549 * 304.99743 * 4 3 2 31 31 H 1.08991 * 109.47096 * 185.00050 * 4 3 2 32 32 H 1.08997 * 109.47209 * 180.02562 * 8 6 5 33 33 H 1.09010 * 109.46883 * 300.00276 * 8 6 5 34 34 H 1.08996 * 109.46974 * 59.99995 * 8 6 5 35 35 H 1.09000 * 109.46661 * 295.19477 * 15 13 12 36 36 H 1.08998 * 109.47207 * 55.19629 * 15 13 12 37 37 H 1.09000 * 109.47134 * 175.19501 * 15 13 12 38 38 H 0.96995 * 119.99618 * 355.09884 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3811 0.4195 -1.3245 7 1 5.8042 0.2824 -0.3295 8 6 5.9900 1.6656 -1.9704 9 6 5.6898 -0.7876 -2.1724 10 7 5.1250 -1.0995 -3.3041 11 7 5.6350 -2.1941 -3.7484 12 6 6.5420 -2.6180 -2.9149 13 6 7.3754 -3.8649 -3.0620 14 1 8.0465 -3.9564 -2.2080 15 6 8.1975 -3.7799 -4.3497 16 6 6.4715 -5.0692 -3.1218 17 1 6.1671 -5.4690 -4.0778 18 6 6.0329 -5.6605 -1.9560 19 7 6.2978 -5.1018 -0.7952 20 14 5.0628 -7.2553 -2.0253 21 1 4.7118 -7.6815 -0.6467 22 1 3.8199 -7.0449 -2.8103 23 1 5.8858 -8.3077 -2.6738 24 8 6.5942 -1.7423 -1.8972 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8514 0.5684 0.8410 31 1 3.9784 2.1767 0.0889 32 1 7.0702 1.5431 -2.0490 33 1 5.5668 1.8028 -2.9656 34 1 5.7667 2.5386 -1.3571 35 1 7.5269 -3.7744 -5.2090 36 1 8.7881 -2.8638 -4.3438 37 1 8.8629 -4.6408 -4.4135 38 1 6.8613 -4.3135 -0.7538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261577181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -66.653669 kcal Electronic energy + Delta-G solvation = -21047.052867 eV Core-core repulsion = 17698.888383 eV Total energy + Delta-G solvation = -3348.164484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.14286 -38.70130 -37.43090 -35.10050 -34.99492 -32.62376 -31.27852 -29.79342 -28.48623 -26.34979 -24.87091 -24.20688 -23.40439 -22.61712 -21.09260 -20.53589 -17.40819 -17.01287 -16.66239 -16.59278 -16.13901 -15.59547 -15.44872 -14.87532 -14.51896 -13.82707 -13.72302 -13.62117 -13.02164 -12.89650 -12.48623 -12.21987 -12.11793 -11.75082 -11.38027 -11.26108 -11.23139 -11.14733 -11.05710 -10.85195 -10.73090 -10.32008 -10.11119 -9.82787 -9.75354 -9.73502 -9.10741 -8.68991 -8.27819 -6.63186 -4.38348 2.10707 2.86943 3.35722 3.40923 3.48330 3.59235 3.69180 3.91942 4.39670 4.58935 4.78091 4.94414 4.96741 5.09573 5.15280 5.21518 5.23486 5.28699 5.35015 5.53635 5.57741 5.63265 5.64360 5.72009 6.05657 6.12798 6.24773 6.29188 6.42983 6.43947 6.77307 6.95761 7.03912 7.14305 7.16424 7.78895 8.22632 8.57251 9.32919 9.40760 10.74601 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.005655 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.226877 B = 4949.758875 C = 6219.003706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.060 3.940 5 O -0.354 6.354 6 C 0.198 3.802 7 H 0.085 0.915 8 C -0.165 4.165 9 C 0.102 3.898 10 N -0.261 5.261 11 N -0.317 5.317 12 C 0.219 3.781 13 C 0.105 3.895 14 H 0.059 0.941 15 C -0.121 4.121 16 C -0.579 4.579 17 H 0.068 0.932 18 C 0.023 3.977 19 N -0.888 5.888 20 Si 1.073 2.927 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.281 1.281 24 O -0.234 6.234 25 H 0.086 0.914 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.516 13.784 3.649 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.012 4.012 4 C -0.017 4.017 5 O -0.273 6.273 6 C 0.138 3.862 7 H 0.103 0.897 8 C -0.222 4.222 9 C -0.110 4.110 10 N -0.110 5.110 11 N -0.162 5.162 12 C 0.010 3.990 13 C 0.084 3.916 14 H 0.077 0.923 15 C -0.179 4.179 16 C -0.616 4.616 17 H 0.086 0.914 18 C -0.184 4.184 19 N -0.521 5.521 20 Si 0.900 3.100 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.207 1.207 24 O -0.114 6.114 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.117 12.521 3.419 13.952 hybrid contribution 1.251 1.447 0.420 1.959 sum -3.866 13.969 3.839 14.994 Atomic orbital electron populations 1.22744 0.81144 1.03019 0.99560 1.88054 1.19544 1.26918 1.95284 1.22530 0.92159 0.85812 1.00744 1.22660 0.93766 0.97599 0.87647 1.88120 1.19822 1.81782 1.37530 1.19727 0.83022 0.87287 0.96115 0.89734 1.22235 1.01351 0.95879 1.02777 1.26976 0.93157 0.94212 0.96663 1.74181 1.20336 1.08286 1.08180 1.74304 1.09974 1.05588 1.26366 1.30849 0.96856 0.91120 0.80152 1.17956 0.92937 0.84088 0.96647 0.92279 1.21653 0.98843 0.99679 0.97736 1.21874 1.34014 1.09547 0.96130 0.91385 1.26178 0.97091 1.03101 0.92077 1.70815 1.33000 1.21772 1.26540 0.83474 0.76097 0.74199 0.76265 1.20535 1.20987 1.20730 1.84831 1.50514 1.29748 1.46319 0.89502 0.94363 0.94028 0.91814 0.92265 0.92023 0.91426 0.91042 0.90562 0.91124 0.92418 0.95032 0.91838 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.80 10.67 -40.09 -0.43 -6.23 16 3 C 0.06 0.74 6.32 37.16 0.23 0.98 16 4 C 0.06 0.73 6.13 37.16 0.23 0.96 16 5 O -0.35 -6.05 9.94 -40.09 -0.40 -6.45 16 6 C 0.20 3.26 3.27 -27.88 -0.09 3.17 16 7 H 0.08 1.21 7.79 -51.93 -0.40 0.81 16 8 C -0.16 -2.06 9.51 37.16 0.35 -1.71 16 9 C 0.10 2.28 7.36 -12.94 -0.10 2.19 16 10 N -0.26 -6.55 12.22 32.55 0.40 -6.15 16 11 N -0.32 -8.49 12.22 32.55 0.40 -8.09 16 12 C 0.22 5.69 6.75 -12.94 -0.09 5.61 16 13 C 0.10 2.63 2.40 -92.92 -0.22 2.41 16 14 H 0.06 1.51 6.98 -51.93 -0.36 1.15 16 15 C -0.12 -2.54 9.15 37.16 0.34 -2.20 16 16 C -0.58 -16.02 8.29 -34.44 -0.29 -16.31 16 17 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 18 C 0.02 0.65 5.45 -17.82 -0.10 0.55 16 19 N -0.89 -26.47 13.63 55.43 0.76 -25.72 16 20 Si 1.07 25.05 29.91 -169.99 -5.08 19.96 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 O -0.23 -5.73 10.87 5.41 0.06 -5.67 16 25 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.05 8.14 -51.92 -0.42 0.62 16 34 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.27 8.06 6.62 -40.82 -0.27 7.79 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -35.09 330.88 -3.63 -38.72 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.71 Total: -2.47 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 1.39 Total: -2.89 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 1.55 Total: -39.96 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.77 Total: -18.35 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.96 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.09 -3.63 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.932 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds