Wall clock time and date at job start Mon Mar 30 2020 02:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99360 * 2 1 4 4 C 1.53008 * 109.47032 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46864 * 64.99820 * 4 3 2 6 6 C 1.42902 * 113.99592 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47163 * 30.00243 * 6 5 4 8 8 C 1.52997 * 109.47324 * 270.00199 * 6 5 4 9 9 C 1.50707 * 109.46961 * 149.99871 * 6 5 4 10 10 N 1.30268 * 126.27743 * 44.97772 * 9 6 5 11 11 N 1.28669 * 109.38166 * 179.97438 * 10 9 6 12 12 C 1.30275 * 109.37655 * 0.02562 * 11 10 9 13 13 C 1.50702 * 126.28225 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47329 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46988 * 60.02660 * 13 12 11 16 16 C 1.50699 * 109.47339 * 300.02741 * 13 12 11 17 17 H 1.07996 * 120.00204 * 94.93410 * 16 13 12 18 18 C 1.37881 * 119.99513 * 274.93865 * 16 13 12 19 19 N 1.31514 * 120.00415 * 6.43147 * 18 16 13 20 20 Si 1.86798 * 119.99559 * 186.44116 * 18 16 13 21 21 H 1.48504 * 109.47167 * 179.97438 * 20 18 16 22 22 H 1.48499 * 109.47162 * 299.99347 * 20 18 16 23 23 H 1.48502 * 109.47559 * 59.99746 * 20 18 16 24 24 O 1.34357 * 126.28459 * 225.26123 * 9 6 5 25 25 H 1.09008 * 109.46747 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47119 * 299.99808 * 1 2 3 27 27 H 1.08996 * 109.47475 * 60.00239 * 1 2 3 28 28 H 1.09003 * 109.47338 * 60.00611 * 3 2 1 29 29 H 1.09003 * 109.47613 * 299.99851 * 3 2 1 30 30 H 1.09006 * 109.46549 * 304.99743 * 4 3 2 31 31 H 1.08991 * 109.47096 * 185.00050 * 4 3 2 32 32 H 1.08997 * 109.47209 * 180.02562 * 8 6 5 33 33 H 1.09010 * 109.46883 * 300.00276 * 8 6 5 34 34 H 1.08996 * 109.46974 * 59.99995 * 8 6 5 35 35 H 1.09000 * 109.46661 * 295.19477 * 15 13 12 36 36 H 1.08998 * 109.47207 * 55.19629 * 15 13 12 37 37 H 1.09000 * 109.47134 * 175.19501 * 15 13 12 38 38 H 0.96995 * 119.99618 * 355.09884 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3811 0.4195 -1.3245 7 1 5.8042 0.2824 -0.3295 8 6 5.9900 1.6656 -1.9704 9 6 5.6898 -0.7876 -2.1724 10 7 5.1250 -1.0995 -3.3041 11 7 5.6350 -2.1941 -3.7484 12 6 6.5420 -2.6180 -2.9149 13 6 7.3754 -3.8649 -3.0620 14 1 8.0465 -3.9564 -2.2080 15 6 8.1975 -3.7799 -4.3497 16 6 6.4715 -5.0692 -3.1218 17 1 6.1671 -5.4690 -4.0778 18 6 6.0329 -5.6605 -1.9560 19 7 6.2978 -5.1018 -0.7952 20 14 5.0628 -7.2553 -2.0253 21 1 4.7118 -7.6815 -0.6467 22 1 3.8199 -7.0449 -2.8103 23 1 5.8858 -8.3077 -2.6738 24 8 6.5942 -1.7423 -1.8972 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8465 -0.8900 30 1 3.8514 0.5684 0.8410 31 1 3.9784 2.1767 0.0889 32 1 7.0702 1.5431 -2.0490 33 1 5.5668 1.8028 -2.9656 34 1 5.7667 2.5386 -1.3571 35 1 7.5269 -3.7744 -5.2090 36 1 8.7881 -2.8638 -4.3438 37 1 8.8629 -4.6408 -4.4135 38 1 6.8613 -4.3135 -0.7538 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261577181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:12 Heat of formation + Delta-G solvation = -95.734832 kcal Electronic energy + Delta-G solvation = -21048.313921 eV Core-core repulsion = 17698.888383 eV Total energy + Delta-G solvation = -3349.425538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.06307 -39.80724 -38.48549 -37.05609 -36.96967 -34.05950 -33.10417 -30.83770 -30.11489 -27.24570 -26.87987 -25.71007 -25.33164 -23.60058 -22.72836 -22.41395 -19.33031 -18.31925 -18.21906 -18.03870 -17.56945 -17.09599 -16.50402 -15.97174 -15.82400 -15.72677 -15.63623 -15.35085 -14.15414 -14.05889 -13.86099 -13.36418 -13.31954 -13.15162 -13.00457 -12.93125 -12.77979 -12.73503 -12.61871 -12.38539 -12.11694 -12.04231 -11.93742 -11.64732 -11.15798 -10.88057 -10.76819 -10.66681 -10.23751 -8.84242 -6.60095 0.27791 1.22853 1.47252 1.51773 1.60576 1.76980 2.47392 2.62426 2.85074 2.89747 3.16949 3.62251 3.72147 3.86931 4.06890 4.19831 4.24901 4.35907 4.39915 4.45571 4.49694 4.50150 4.52681 4.57194 4.57464 4.65315 4.76720 4.80519 4.82318 4.92296 5.13124 5.13659 5.32065 5.72260 5.98721 6.02381 6.25455 6.36251 7.19374 7.46927 8.54024 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.015822 B = 0.005655 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.226877 B = 4949.758875 C = 6219.003706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.428 6.428 3 C 0.058 3.942 4 C 0.050 3.950 5 O -0.388 6.388 6 C 0.193 3.807 7 H 0.107 0.893 8 C -0.154 4.154 9 C 0.120 3.880 10 N -0.296 5.296 11 N -0.340 5.340 12 C 0.205 3.795 13 C 0.098 3.902 14 H 0.049 0.951 15 C -0.111 4.111 16 C -0.590 4.590 17 H 0.063 0.937 18 C -0.024 4.024 19 N -0.916 5.916 20 Si 1.114 2.886 21 H -0.282 1.282 22 H -0.282 1.282 23 H -0.251 1.251 24 O -0.243 6.243 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 15.227 4.283 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.348 6.348 3 C -0.018 4.018 4 C -0.025 4.025 5 O -0.307 6.307 6 C 0.134 3.866 7 H 0.125 0.875 8 C -0.212 4.212 9 C -0.093 4.093 10 N -0.143 5.143 11 N -0.185 5.185 12 C -0.005 4.005 13 C 0.078 3.922 14 H 0.067 0.933 15 C -0.169 4.169 16 C -0.627 4.627 17 H 0.082 0.918 18 C -0.225 4.225 19 N -0.551 5.551 20 Si 0.934 3.066 21 H -0.207 1.207 22 H -0.208 1.208 23 H -0.175 1.175 24 O -0.124 6.124 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.176 13.988 4.024 15.449 hybrid contribution 1.226 1.155 0.262 1.705 sum -3.950 15.143 4.286 16.226 Atomic orbital electron populations 1.22886 0.79555 1.03268 1.01195 1.87984 1.21639 1.29477 1.95652 1.22807 0.91626 0.84753 1.02622 1.23071 0.94490 0.99424 0.85514 1.88075 1.19827 1.82714 1.40064 1.20273 0.83711 0.86138 0.96522 0.87489 1.22224 1.01279 0.95260 1.02424 1.28405 0.90506 0.94261 0.96176 1.74107 1.21722 1.08460 1.09965 1.74222 1.10418 1.06547 1.27353 1.30702 0.97151 0.91986 0.80670 1.18041 0.92714 0.83244 0.98244 0.93263 1.21581 0.98567 1.01665 0.95102 1.22138 1.34066 1.10628 0.95851 0.91840 1.27519 0.97608 1.05611 0.91770 1.70928 1.34564 1.22190 1.27422 0.82986 0.75418 0.71763 0.76386 1.20729 1.20787 1.17508 1.84825 1.51389 1.30233 1.45960 0.90107 0.91706 0.93328 0.88113 0.91971 0.92547 0.86899 0.90298 0.92108 0.86734 0.93134 0.92976 0.89919 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.43 -12.80 10.67 -144.34 -1.54 -14.34 16 3 C 0.06 1.21 6.32 71.98 0.45 1.66 16 4 C 0.05 1.10 6.13 71.98 0.44 1.54 16 5 O -0.39 -12.69 9.94 -144.34 -1.43 -14.12 16 6 C 0.19 6.02 3.27 29.85 0.10 6.12 16 7 H 0.11 2.81 7.79 -2.39 -0.02 2.79 16 8 C -0.15 -3.42 9.51 71.98 0.68 -2.74 16 9 C 0.12 5.34 7.36 88.34 0.65 5.99 16 10 N -0.30 -15.05 12.22 -165.51 -2.02 -17.08 16 11 N -0.34 -18.60 12.22 -165.50 -2.02 -20.62 16 12 C 0.21 10.84 6.75 88.34 0.60 11.44 16 13 C 0.10 5.02 2.40 -12.28 -0.03 4.99 16 14 H 0.05 2.58 6.98 -2.39 -0.02 2.56 16 15 C -0.11 -4.60 9.15 71.98 0.66 -3.94 16 16 C -0.59 -33.02 8.29 25.60 0.21 -32.81 16 17 H 0.06 3.53 7.82 -2.91 -0.02 3.51 16 18 C -0.02 -1.37 5.45 84.66 0.46 -0.91 16 19 N -0.92 -55.64 13.63 21.45 0.29 -55.35 16 20 Si 1.11 50.38 29.91 68.60 2.05 52.43 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 24 O -0.24 -12.08 10.87 -3.55 -0.04 -12.12 16 25 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.28 8.08 -2.38 -0.02 1.26 16 31 H 0.11 1.40 7.87 -2.39 -0.02 1.38 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.11 1.55 7.87 -2.39 -0.02 1.54 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.26 15.89 6.62 -92.71 -0.61 15.27 16 Total: -1.00 -78.63 330.88 1.96 -76.67 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.20 Total: 11.37 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.48 Total: -6.84 kcal Atomic # 7 Polarization: -89.29 SS G_CDS: -3.75 Total: -93.05 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -3.01 Total: -40.58 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -78.63 1.96 -76.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261577181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.067 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds