Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47101 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.33581 * 60.80073 * 16 15 14 18 18 C 1.54487 * 110.37136 * 183.16435 * 16 15 14 19 19 C 1.54514 * 104.06146 * 142.81252 * 18 16 15 20 20 C 1.54487 * 104.06243 * 359.97438 * 19 18 16 21 21 H 1.09002 * 110.45937 * 94.90118 * 20 19 18 22 22 C 1.50695 * 110.36904 * 217.19071 * 20 19 18 23 23 N 1.34773 * 120.00319 * 291.83386 * 22 20 19 24 24 O 1.21282 * 119.99616 * 111.84202 * 22 20 19 25 25 O 1.44425 * 104.80477 * 336.02317 * 20 19 18 26 26 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 27 27 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 28 28 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 29 29 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 31 31 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 32 32 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 33 33 H 1.08995 * 110.50837 * 261.45198 * 18 16 15 34 34 H 1.09000 * 110.50837 * 24.16725 * 18 16 15 35 35 H 1.09000 * 110.51069 * 241.36050 * 19 18 16 36 36 H 1.08990 * 110.62859 * 118.70163 * 19 18 16 37 37 H 0.97007 * 120.00197 * 0.02562 * 23 22 20 38 38 H 0.97001 * 120.00250 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6860 -0.2188 4.8999 17 1 0.5962 -0.2229 4.9217 18 6 2.2542 -0.8828 6.1738 19 6 2.5199 0.3027 7.1285 20 6 2.0815 1.5428 6.3182 21 1 1.0527 1.8108 6.5586 22 6 3.0031 2.7026 6.5945 23 7 3.0085 3.2843 7.8103 24 8 3.7398 3.1127 5.7228 25 8 2.1854 1.1362 4.9362 26 1 -0.3633 -1.0239 -0.0882 27 1 -0.3633 0.5883 -0.8426 28 1 -0.3633 0.4355 0.9308 29 1 2.9400 -0.1044 -4.2545 30 1 1.1495 0.5389 2.5435 31 1 1.8327 -1.9681 3.6508 32 1 3.2856 -0.9399 3.6505 33 1 1.5232 -1.5655 6.6070 34 1 3.1826 -1.4079 5.9492 35 1 3.5797 0.3638 7.3758 36 1 1.9221 0.2073 8.0348 37 1 2.4194 2.9561 8.5076 38 1 3.6015 4.0311 7.9880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261724495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -128.002409 kcal Electronic energy + Delta-G solvation = -20864.918806 eV Core-core repulsion = 17514.094041 eV Total energy + Delta-G solvation = -3350.824765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58316 -38.99223 -38.30932 -34.28198 -34.04132 -33.54197 -32.39726 -31.33188 -30.10279 -26.32960 -25.16100 -23.31777 -21.92296 -21.42056 -20.85147 -19.11649 -18.05068 -17.34029 -16.96762 -16.73049 -16.06392 -15.85017 -15.15671 -14.86839 -14.52874 -14.18343 -14.08378 -13.91920 -13.24540 -12.80663 -12.57209 -12.30302 -12.15341 -12.06229 -11.85126 -11.57261 -11.28493 -11.12864 -10.99751 -10.66080 -10.32790 -10.16075 -10.06945 -9.92355 -9.72137 -9.07797 -8.59650 -8.45386 -8.37904 -5.98351 -3.97063 2.27465 2.78533 3.34000 3.41143 3.43243 3.62777 3.76685 3.93829 4.12390 4.33456 4.44840 4.47707 4.68363 4.74539 4.90930 5.09663 5.14547 5.33093 5.33499 5.50579 5.66044 5.73100 5.92469 6.16389 6.25298 6.34341 6.49483 6.50185 6.61948 6.92783 6.93358 7.10701 7.27208 7.65508 7.92230 8.28077 8.64117 9.17079 9.27770 9.62113 11.14989 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.004328 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.369884 B = 6468.640283 C = 7156.904729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 H 0.055 0.945 4 C -0.493 4.493 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.520 3.480 13 O -0.533 6.533 14 N -0.744 5.744 15 C 0.128 3.872 16 C 0.061 3.939 17 H 0.080 0.920 18 C -0.146 4.146 19 C -0.142 4.142 20 C 0.054 3.946 21 H 0.096 0.904 22 C 0.520 3.480 23 N -0.855 5.855 24 O -0.514 6.514 25 O -0.333 6.333 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.397 0.603 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.400 0.600 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 5.462 27.850 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.028 4.028 3 H 0.073 0.927 4 C -0.531 4.531 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.308 3.692 13 O -0.408 6.408 14 N -0.399 5.399 15 C 0.004 3.996 16 C 0.003 3.997 17 H 0.098 0.902 18 C -0.184 4.184 19 C -0.180 4.180 20 C -0.007 4.007 21 H 0.113 0.887 22 C 0.303 3.697 23 N -0.421 5.421 24 O -0.387 6.387 25 O -0.251 6.251 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.231 0.769 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.229 0.771 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -4.569 4.986 26.629 27.474 hybrid contribution -0.337 1.506 0.691 1.691 sum -4.906 6.492 27.319 28.506 Atomic orbital electron populations 1.21935 0.96853 1.01230 0.99011 1.19345 0.94026 0.97073 0.92307 0.92741 1.20756 1.42835 0.96152 0.93388 0.89648 1.25023 0.94652 0.98007 0.95349 1.69889 1.46295 1.35643 1.01668 0.86963 0.79198 0.86739 0.77287 1.20041 1.21330 1.18912 1.21734 0.78978 0.84492 0.83983 1.90571 1.37084 1.26536 1.86591 1.46216 1.55657 1.32702 1.05348 1.21267 1.00092 0.95475 0.82775 1.23411 0.98432 0.82307 0.95558 0.90193 1.22931 1.03039 0.97925 0.94506 1.22900 1.03196 0.93159 0.98788 1.22833 0.98700 0.93866 0.85340 0.88687 1.20281 0.83453 0.83614 0.82374 1.43744 1.46196 1.38303 1.13883 1.90834 1.40271 1.62961 1.44616 1.89389 1.85189 1.28375 1.22173 0.92973 0.92775 0.95521 0.92623 0.76876 0.90495 0.91223 0.89596 0.89585 0.90091 0.89504 0.77141 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.12 37.16 0.34 -2.41 16 2 C -0.01 -0.14 2.30 -92.92 -0.21 -0.35 16 3 H 0.05 1.33 5.29 -51.93 -0.27 1.06 16 4 C -0.49 -14.74 8.36 -34.44 -0.29 -15.03 16 5 H 0.09 2.87 7.61 -52.49 -0.40 2.47 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -28.47 13.96 55.43 0.77 -27.70 16 8 Si 0.87 22.04 26.99 -169.99 -4.59 17.45 16 9 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.20 6.82 56.52 0.39 -5.82 16 12 C 0.52 12.19 7.15 -10.99 -0.08 12.11 16 13 O -0.53 -14.58 15.77 5.55 0.09 -14.49 16 14 N -0.74 -13.39 5.34 -60.30 -0.32 -13.71 16 15 C 0.13 1.90 5.31 -4.05 -0.02 1.88 16 16 C 0.06 0.65 3.36 -25.95 -0.09 0.57 16 17 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.15 -1.10 6.63 -25.16 -0.17 -1.27 16 19 C -0.14 -0.89 6.62 -25.16 -0.17 -1.05 16 20 C 0.05 0.48 3.71 -27.11 -0.10 0.38 16 21 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 22 C 0.52 5.48 7.34 -10.99 -0.08 5.40 16 23 N -0.85 -4.50 8.87 31.22 0.28 -4.23 16 24 O -0.51 -8.56 17.39 -13.64 -0.24 -8.79 16 25 O -0.33 -4.45 10.46 -54.42 -0.57 -5.02 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.44 7.43 -51.93 -0.39 0.06 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.40 6.33 7.78 -40.82 -0.32 6.01 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 35 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 36 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 38 H 0.40 1.87 8.93 -40.82 -0.36 1.51 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -40.03 320.19 -6.17 -46.20 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.45 Total: 3.21 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -0.96 Total: 2.26 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.73 Total: -45.63 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.72 Total: -28.31 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.59 Total: 17.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -40.03 -6.17 -46.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.803 kcal (2) G-P(sol) polarization free energy of solvation -40.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds