Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.52995 * 109.47101 * 179.97438 * 15 14 12 17 17 H 1.09003 * 110.33581 * 60.80073 * 16 15 14 18 18 C 1.54487 * 110.37136 * 183.16435 * 16 15 14 19 19 C 1.54514 * 104.06146 * 142.81252 * 18 16 15 20 20 C 1.54487 * 104.06243 * 359.97438 * 19 18 16 21 21 H 1.09002 * 110.45937 * 94.90118 * 20 19 18 22 22 C 1.50695 * 110.36904 * 217.19071 * 20 19 18 23 23 N 1.34773 * 120.00319 * 291.83386 * 22 20 19 24 24 O 1.21282 * 119.99616 * 111.84202 * 22 20 19 25 25 O 1.44425 * 104.80477 * 336.02317 * 20 19 18 26 26 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 27 27 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 28 28 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 29 29 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 30 30 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 31 31 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 32 32 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 33 33 H 1.08995 * 110.50837 * 261.45198 * 18 16 15 34 34 H 1.09000 * 110.50837 * 24.16725 * 18 16 15 35 35 H 1.09000 * 110.51069 * 241.36050 * 19 18 16 36 36 H 1.08990 * 110.62859 * 118.70163 * 19 18 16 37 37 H 0.97007 * 120.00197 * 0.02562 * 23 22 20 38 38 H 0.97001 * 120.00250 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6860 -0.2188 4.8999 17 1 0.5962 -0.2229 4.9217 18 6 2.2542 -0.8828 6.1738 19 6 2.5199 0.3027 7.1285 20 6 2.0815 1.5428 6.3182 21 1 1.0527 1.8108 6.5586 22 6 3.0031 2.7026 6.5945 23 7 3.0085 3.2843 7.8103 24 8 3.7398 3.1127 5.7228 25 8 2.1854 1.1362 4.9362 26 1 -0.3633 -1.0239 -0.0882 27 1 -0.3633 0.5883 -0.8426 28 1 -0.3633 0.4355 0.9308 29 1 2.9400 -0.1044 -4.2545 30 1 1.1495 0.5389 2.5435 31 1 1.8327 -1.9681 3.6508 32 1 3.2856 -0.9399 3.6505 33 1 1.5232 -1.5655 6.6070 34 1 3.1826 -1.4079 5.9492 35 1 3.5797 0.3638 7.3758 36 1 1.9221 0.2073 8.0348 37 1 2.4194 2.9561 8.5076 38 1 3.6015 4.0311 7.9880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261724495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = -163.326541 kcal Electronic energy + Delta-G solvation = -20866.450575 eV Core-core repulsion = 17514.094041 eV Total energy + Delta-G solvation = -3352.356534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37401 -40.53643 -39.38096 -35.73666 -35.60698 -34.83021 -33.42590 -33.01709 -31.15833 -27.44599 -27.14515 -24.52369 -23.24463 -22.33366 -21.55538 -20.82789 -19.14911 -18.72333 -18.10307 -17.73989 -17.40740 -16.89279 -16.63856 -16.12573 -15.82051 -15.61419 -15.28347 -14.85476 -14.63527 -14.46168 -14.16699 -13.74501 -13.60882 -13.08745 -12.95842 -12.78006 -12.62743 -12.59626 -12.35803 -12.12216 -11.76528 -11.71912 -11.25288 -11.12267 -10.77086 -10.73934 -10.67977 -10.43481 -9.98458 -8.28659 -6.34195 1.33614 1.37916 1.46600 1.53431 1.89749 2.13919 2.33876 2.39765 3.02690 3.10121 3.49163 3.72804 3.91652 4.03847 4.11366 4.13003 4.25257 4.41728 4.44648 4.51255 4.66725 4.74803 4.81577 4.91058 4.91773 5.04162 5.13301 5.15995 5.50425 5.56551 5.58772 5.73163 5.89988 6.25285 6.45201 6.65676 6.84891 7.27032 7.32522 7.52224 8.89380 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024787 B = 0.004328 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.369884 B = 6468.640283 C = 7156.904729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.012 4.012 3 H 0.064 0.936 4 C -0.506 4.506 5 H 0.025 0.975 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.943 3.057 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.225 1.225 12 C 0.517 3.483 13 O -0.587 6.587 14 N -0.721 5.721 15 C 0.122 3.878 16 C 0.066 3.934 17 H 0.111 0.889 18 C -0.143 4.143 19 C -0.132 4.132 20 C 0.049 3.951 21 H 0.134 0.866 22 C 0.514 3.486 23 N -0.827 5.827 24 O -0.590 6.590 25 O -0.378 6.378 26 H 0.041 0.959 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.267 0.733 30 H 0.412 0.588 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.422 0.578 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 7.609 31.588 33.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 H 0.082 0.918 4 C -0.545 4.545 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.766 3.234 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.148 1.148 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.375 5.375 15 C -0.002 4.002 16 C 0.009 3.991 17 H 0.128 0.872 18 C -0.182 4.182 19 C -0.170 4.170 20 C -0.012 4.012 21 H 0.151 0.849 22 C 0.298 3.702 23 N -0.393 5.393 24 O -0.469 6.469 25 O -0.297 6.297 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.248 0.752 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.151 0.849 37 H 0.254 0.746 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.130 7.159 30.503 32.133 hybrid contribution 0.463 0.751 -0.354 0.951 sum -6.667 7.910 30.150 31.875 Atomic orbital electron populations 1.21801 0.93381 1.01312 1.01719 1.19354 0.96677 0.96653 0.90655 0.91784 1.20903 1.43408 0.93907 0.96241 0.95645 1.26017 0.94037 1.04297 0.94496 1.70063 1.48001 1.38239 1.02737 0.85809 0.80314 0.78929 0.78383 1.20202 1.20542 1.14790 1.21506 0.78586 0.83890 0.85532 1.90552 1.39607 1.28904 1.87515 1.45926 1.54331 1.32558 1.04679 1.21497 0.98690 0.96537 0.83427 1.23459 0.99818 0.81558 0.94269 0.87188 1.22970 1.03115 0.98703 0.93363 1.22940 1.03444 0.90930 0.99698 1.23189 1.00180 0.94029 0.83782 0.84854 1.20798 0.82790 0.83883 0.82704 1.43540 1.45615 1.37324 1.12811 1.90802 1.43496 1.65409 1.47204 1.89344 1.85866 1.29355 1.25182 0.93950 0.92501 0.90651 0.92367 0.75187 0.89768 0.93945 0.86281 0.91202 0.91236 0.84884 0.74559 0.75827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 9.12 71.98 0.66 -4.22 16 2 C -0.01 -0.57 2.30 -12.28 -0.03 -0.60 16 3 H 0.06 3.00 5.29 -2.39 -0.01 2.99 16 4 C -0.51 -31.52 8.36 25.60 0.21 -31.31 16 5 H 0.03 1.83 7.61 -2.91 -0.02 1.81 16 6 C 0.01 0.50 5.47 84.66 0.46 0.96 16 7 N -0.95 -62.84 13.96 21.45 0.30 -62.54 16 8 Si 0.94 45.34 26.99 68.60 1.85 47.20 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.23 -9.37 6.82 99.48 0.68 -8.69 16 12 C 0.52 24.51 7.15 87.66 0.63 25.14 16 13 O -0.59 -33.63 15.77 -3.04 -0.05 -33.67 16 14 N -0.72 -25.09 5.34 -463.08 -2.47 -27.56 16 15 C 0.12 3.53 5.31 86.38 0.46 3.98 16 16 C 0.07 1.23 3.36 31.10 0.10 1.33 16 17 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 18 C -0.14 -1.68 6.63 31.61 0.21 -1.47 16 19 C -0.13 -1.10 6.62 31.61 0.21 -0.89 16 20 C 0.05 0.70 3.71 30.35 0.11 0.81 16 21 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 22 C 0.51 9.90 7.34 87.66 0.64 10.54 16 23 N -0.83 -6.33 8.87 -173.54 -1.54 -7.87 16 24 O -0.59 -19.81 17.39 15.32 0.27 -19.55 16 25 O -0.38 -9.32 10.46 -130.63 -1.37 -10.69 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 2.22 7.43 -2.39 -0.02 2.20 16 29 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 30 H 0.41 11.95 7.78 -92.71 -0.72 11.23 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 1.05 7.86 -2.39 -0.02 1.03 16 35 H 0.07 0.76 7.86 -2.39 -0.02 0.75 16 36 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.42 -0.45 8.83 -92.70 -0.82 -1.27 16 38 H 0.41 2.87 8.93 -92.71 -0.83 2.05 16 Total: -1.00 -96.65 320.19 -0.63 -97.28 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -1.29 Total: 13.12 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 3.67 Total: 4.28 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -3.71 Total: -97.97 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -1.15 Total: -63.91 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.85 Total: 47.20 kcal Total: -96.65 -0.63 -97.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.042 kcal (2) G-P(sol) polarization free energy of solvation -96.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds