Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47472 * 2 1 4 4 C 1.50702 * 109.47016 * 239.99537 * 2 1 3 5 5 H 1.08003 * 119.99907 * 240.00180 * 4 2 1 6 6 C 1.37872 * 119.99843 * 60.00473 * 4 2 1 7 7 N 1.31511 * 120.00337 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47588 * 59.99935 * 8 6 4 10 10 H 1.48501 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46963 * 299.99527 * 8 6 4 12 12 C 1.50704 * 109.47023 * 120.00070 * 2 1 3 13 13 O 1.21278 * 120.00615 * 119.99771 * 12 2 1 14 14 N 1.34775 * 119.99632 * 299.99468 * 12 2 1 15 15 C 1.46499 * 120.00179 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47431 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.82264 * 59.29940 * 16 15 14 18 18 C 1.54382 * 109.83109 * 180.18541 * 16 15 14 19 19 C 1.55304 * 102.25133 * 140.95964 * 18 16 15 20 20 C 1.54945 * 100.94610 * 325.86612 * 19 18 16 21 21 H 1.09000 * 110.31157 * 277.43493 * 20 19 18 22 22 C 1.50693 * 110.31195 * 155.35795 * 20 19 18 23 23 N 1.34775 * 119.99936 * 65.00361 * 22 20 19 24 24 O 1.21282 * 120.00330 * 245.00728 * 22 20 19 25 25 O 1.43233 * 109.82887 * 298.41122 * 16 15 14 26 26 H 1.09002 * 109.46668 * 300.00277 * 1 2 3 27 27 H 1.08994 * 109.46994 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00875 * 180.02562 * 7 6 4 30 30 H 0.97006 * 120.00539 * 0.02562 * 14 12 2 31 31 H 1.09003 * 109.47037 * 60.00275 * 15 14 12 32 32 H 1.09004 * 109.47079 * 300.00364 * 15 14 12 33 33 H 1.08993 * 110.84855 * 259.15215 * 18 16 15 34 34 H 1.09002 * 110.84858 * 22.77103 * 18 16 15 35 35 H 1.09003 * 111.12477 * 83.79048 * 19 18 16 36 36 H 1.09010 * 111.12483 * 207.90588 * 19 18 16 37 37 H 0.97000 * 120.00381 * 359.97438 * 23 22 20 38 38 H 0.97002 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 6 1.6849 -0.2192 4.9000 17 1 0.5950 -0.2057 4.8995 18 6 2.1992 -0.9374 6.1661 19 6 2.5279 0.2520 7.1091 20 6 3.0142 1.3113 6.0882 21 1 4.0620 1.1435 5.8390 22 6 2.8253 2.6991 6.6442 23 7 3.5219 3.0908 7.7294 24 8 2.0464 3.4635 6.1152 25 8 2.1875 1.1218 4.9266 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7083 1.1607 -3.4844 30 1 1.1489 0.5387 2.5436 31 1 3.2855 -0.9397 3.6507 32 1 1.8325 -1.9679 3.6510 33 1 1.4225 -1.5699 6.5958 34 1 3.0956 -1.5172 5.9461 35 1 1.6367 0.5938 7.6356 36 1 3.3195 -0.0103 7.8111 37 1 4.1446 2.4794 8.1528 38 1 3.4001 3.9840 8.0875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261724497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -131.173157 kcal Electronic energy + Delta-G solvation = -20798.592805 eV Core-core repulsion = 17447.630546 eV Total energy + Delta-G solvation = -3350.962259 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55593 -38.92772 -38.22403 -34.21635 -33.97954 -33.61004 -32.39111 -30.84254 -29.76386 -26.21886 -25.02910 -23.19665 -21.99423 -21.61811 -20.50458 -19.14875 -18.04119 -17.68797 -16.49051 -16.18415 -15.99587 -15.70454 -15.04543 -14.86038 -14.46123 -14.37838 -13.97838 -13.56321 -13.26752 -12.69499 -12.57160 -12.31530 -12.04594 -11.93047 -11.57268 -11.34850 -11.30699 -10.92167 -10.64919 -10.59985 -10.28664 -10.14631 -10.01851 -9.88103 -9.62114 -8.88174 -8.51596 -8.31735 -8.22498 -5.93823 -3.96985 2.32699 2.84780 3.41930 3.43992 3.49297 3.61769 3.85684 4.02657 4.09240 4.39911 4.47108 4.55780 4.76133 4.79074 4.95552 5.18537 5.26465 5.33429 5.38900 5.44029 5.64050 5.80138 6.04666 6.38945 6.42320 6.68045 6.74462 6.94988 6.99892 7.04633 7.22004 7.59955 7.86436 7.97321 8.09010 8.26849 8.57675 9.11414 9.36171 9.68006 11.13783 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.003712 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.892310 B = 7541.983224 C = 7949.512213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.552 6.552 14 N -0.741 5.741 15 C 0.113 3.887 16 C 0.066 3.934 17 H 0.091 0.909 18 C -0.145 4.145 19 C -0.144 4.144 20 C 0.061 3.939 21 H 0.099 0.901 22 C 0.516 3.484 23 N -0.855 5.855 24 O -0.518 6.518 25 O -0.340 6.340 26 H 0.013 0.987 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.401 0.599 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.400 0.600 38 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 0.585 24.341 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.071 0.929 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.429 6.429 14 N -0.395 5.395 15 C -0.012 4.012 16 C 0.008 3.992 17 H 0.109 0.891 18 C -0.183 4.183 19 C -0.182 4.182 20 C -0.001 4.001 21 H 0.116 0.884 22 C 0.299 3.701 23 N -0.421 5.421 24 O -0.391 6.391 25 O -0.258 6.258 26 H 0.032 0.968 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.235 0.765 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.229 0.771 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.242 0.480 23.431 23.659 hybrid contribution 0.409 -0.102 -0.185 0.460 sum 3.651 0.378 23.246 23.534 Atomic orbital electron populations 1.21731 0.96579 0.99664 1.00981 1.18865 0.94158 0.96909 0.89344 0.92946 1.21116 1.30920 1.12742 0.89077 0.90896 1.24954 0.95198 0.95091 0.99061 1.69869 1.37116 1.23114 1.23533 0.86515 0.79242 0.79676 0.81720 1.20253 1.21424 1.20247 1.21957 0.78373 0.84163 0.84541 1.90508 1.38307 1.27158 1.86900 1.46177 1.55442 1.32715 1.05188 1.21562 0.99482 0.95877 0.84237 1.23148 0.99265 0.82081 0.94687 0.89119 1.23118 1.03074 0.97914 0.94214 1.23243 1.02744 0.94452 0.97740 1.22851 0.97286 0.92353 0.87591 0.88356 1.20525 0.80196 0.89236 0.80113 1.43764 1.46705 1.19559 1.32100 1.90804 1.35270 1.54567 1.58459 1.88680 1.66347 1.29110 1.41636 0.96832 0.88906 0.95109 0.92967 0.76501 0.91883 0.91089 0.89109 0.89429 0.89736 0.88969 0.77149 0.76487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.87 37.16 0.33 -2.86 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.50 -14.75 8.37 -34.44 -0.29 -15.04 16 5 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.52 12.52 7.15 -10.98 -0.08 12.44 16 13 O -0.55 -14.91 15.46 5.56 0.09 -14.82 16 14 N -0.74 -13.98 5.36 -60.29 -0.32 -14.31 16 15 C 0.11 1.69 5.23 -4.04 -0.02 1.67 16 16 C 0.07 0.76 3.59 -26.01 -0.09 0.67 16 17 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.15 -1.06 6.54 -24.79 -0.16 -1.22 16 19 C -0.14 -0.89 6.55 -24.48 -0.16 -1.05 16 20 C 0.06 0.58 3.86 -26.86 -0.10 0.48 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 22 C 0.52 5.56 7.46 -10.99 -0.08 5.48 16 23 N -0.85 -4.78 8.86 31.22 0.28 -4.51 16 24 O -0.52 -8.49 17.38 -13.77 -0.24 -8.73 16 25 O -0.34 -4.71 10.11 -54.55 -0.55 -5.26 16 26 H 0.01 0.27 7.56 -51.93 -0.39 -0.13 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.40 7.12 7.82 -40.82 -0.32 6.80 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.59 7.85 -51.93 -0.41 0.18 16 35 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.09 0.29 8.14 -51.92 -0.42 -0.14 16 37 H 0.40 0.84 8.83 -40.82 -0.36 0.48 16 38 H 0.40 1.95 8.93 -40.82 -0.36 1.58 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -37.59 320.23 -6.77 -44.36 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.45 Total: 3.87 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.00 Total: 2.62 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: 0.58 Total: -44.30 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.71 Total: -28.81 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.59 -6.77 -44.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.817 kcal (2) G-P(sol) polarization free energy of solvation -37.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds