Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47472 * 2 1 4 4 C 1.50702 * 109.47016 * 239.99537 * 2 1 3 5 5 H 1.08003 * 119.99907 * 240.00180 * 4 2 1 6 6 C 1.37872 * 119.99843 * 60.00473 * 4 2 1 7 7 N 1.31511 * 120.00337 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47588 * 59.99935 * 8 6 4 10 10 H 1.48501 * 109.46937 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46963 * 299.99527 * 8 6 4 12 12 C 1.50704 * 109.47023 * 120.00070 * 2 1 3 13 13 O 1.21278 * 120.00615 * 119.99771 * 12 2 1 14 14 N 1.34775 * 119.99632 * 299.99468 * 12 2 1 15 15 C 1.46499 * 120.00179 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47431 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.82264 * 59.29940 * 16 15 14 18 18 C 1.54382 * 109.83109 * 180.18541 * 16 15 14 19 19 C 1.55304 * 102.25133 * 140.95964 * 18 16 15 20 20 C 1.54945 * 100.94610 * 325.86612 * 19 18 16 21 21 H 1.09000 * 110.31157 * 277.43493 * 20 19 18 22 22 C 1.50693 * 110.31195 * 155.35795 * 20 19 18 23 23 N 1.34775 * 119.99936 * 65.00361 * 22 20 19 24 24 O 1.21282 * 120.00330 * 245.00728 * 22 20 19 25 25 O 1.43233 * 109.82887 * 298.41122 * 16 15 14 26 26 H 1.09002 * 109.46668 * 300.00277 * 1 2 3 27 27 H 1.08994 * 109.46994 * 60.00116 * 1 2 3 28 28 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00875 * 180.02562 * 7 6 4 30 30 H 0.97006 * 120.00539 * 0.02562 * 14 12 2 31 31 H 1.09003 * 109.47037 * 60.00275 * 15 14 12 32 32 H 1.09004 * 109.47079 * 300.00364 * 15 14 12 33 33 H 1.08993 * 110.84855 * 259.15215 * 18 16 15 34 34 H 1.09002 * 110.84858 * 22.77103 * 18 16 15 35 35 H 1.09003 * 111.12477 * 83.79048 * 19 18 16 36 36 H 1.09010 * 111.12483 * 207.90588 * 19 18 16 37 37 H 0.97000 * 120.00381 * 359.97438 * 23 22 20 38 38 H 0.97002 * 120.00217 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1212 -4.0080 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7068 -0.2499 2.4546 15 6 2.1955 -0.9401 3.6508 16 6 1.6849 -0.2192 4.9000 17 1 0.5950 -0.2057 4.8995 18 6 2.1992 -0.9374 6.1661 19 6 2.5279 0.2520 7.1091 20 6 3.0142 1.3113 6.0882 21 1 4.0620 1.1435 5.8390 22 6 2.8253 2.6991 6.6442 23 7 3.5219 3.0908 7.7294 24 8 2.0464 3.4635 6.1152 25 8 2.1875 1.1218 4.9266 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7083 1.1607 -3.4844 30 1 1.1489 0.5387 2.5436 31 1 3.2855 -0.9397 3.6507 32 1 1.8325 -1.9679 3.6510 33 1 1.4225 -1.5699 6.5958 34 1 3.0956 -1.5172 5.9461 35 1 1.6367 0.5938 7.6356 36 1 3.3195 -0.0103 7.8111 37 1 4.1446 2.4794 8.1528 38 1 3.4001 3.9840 8.0875 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261724497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -162.210643 kcal Electronic energy + Delta-G solvation = -20799.938691 eV Core-core repulsion = 17447.630546 eV Total energy + Delta-G solvation = -3352.308145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40239 -40.47342 -39.38280 -35.81854 -35.58126 -34.82641 -33.15489 -32.63730 -31.04268 -27.39889 -27.12095 -24.52568 -23.28215 -22.52812 -21.29684 -20.92876 -18.74496 -18.44303 -18.33608 -17.88486 -16.95283 -16.90334 -16.64210 -16.30892 -15.85804 -15.64316 -15.15207 -14.75488 -14.55321 -14.37478 -13.93315 -13.59449 -13.23452 -12.96660 -12.96010 -12.74351 -12.67927 -12.59465 -12.34818 -12.19247 -11.98988 -11.85371 -11.16423 -11.04991 -10.70492 -10.60493 -10.51427 -10.29659 -9.94476 -8.14021 -6.25694 1.41016 1.43576 1.52018 1.54082 1.93318 2.14059 2.37699 2.55081 3.04518 3.14908 3.41414 3.69320 3.85545 4.00887 4.10149 4.20886 4.34009 4.43680 4.62814 4.65633 4.74665 4.85916 4.89779 4.95646 4.99481 5.02533 5.21756 5.48802 5.58219 5.73835 5.81591 5.93480 5.97693 6.20860 6.45839 6.72777 6.86088 7.32749 7.39695 7.54266 8.91933 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.003712 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.892310 B = 7541.983224 C = 7949.512213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.021 3.979 3 H 0.034 0.966 4 C -0.530 4.530 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.521 3.479 13 O -0.588 6.588 14 N -0.724 5.724 15 C 0.110 3.890 16 C 0.068 3.932 17 H 0.092 0.908 18 C -0.137 4.137 19 C -0.129 4.129 20 C 0.049 3.951 21 H 0.116 0.884 22 C 0.513 3.487 23 N -0.827 5.827 24 O -0.587 6.587 25 O -0.380 6.380 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.407 0.593 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.421 0.579 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -0.181 26.442 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.000 4.000 3 H 0.051 0.949 4 C -0.569 4.569 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.468 6.468 14 N -0.376 5.376 15 C -0.014 4.014 16 C 0.010 3.990 17 H 0.110 0.890 18 C -0.175 4.175 19 C -0.167 4.167 20 C -0.012 4.012 21 H 0.133 0.867 22 C 0.297 3.703 23 N -0.393 5.393 24 O -0.466 6.466 25 O -0.299 6.299 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.242 0.758 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.152 0.848 37 H 0.253 0.747 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.794 -0.275 25.629 25.910 hybrid contribution 0.293 0.195 -0.744 0.824 sum 4.088 -0.080 24.884 25.218 Atomic orbital electron populations 1.21538 0.95090 0.99473 1.01492 1.18814 0.95416 0.95716 0.90074 0.94851 1.21271 1.31731 1.12801 0.91055 0.93080 1.25676 0.95170 0.95762 1.01646 1.69964 1.37217 1.23708 1.24393 0.85582 0.78655 0.78732 0.78487 1.19878 1.19938 1.20088 1.21472 0.78271 0.83679 0.85606 1.90479 1.40048 1.28662 1.87598 1.45987 1.54188 1.32421 1.05037 1.21855 0.99185 0.96398 0.83953 1.23164 0.99270 0.81774 0.94753 0.88999 1.23145 1.04050 0.98237 0.92070 1.23278 1.04009 0.92219 0.97144 1.23182 0.97696 0.92667 0.87611 0.86680 1.20872 0.79577 0.89304 0.80532 1.43543 1.45371 1.20183 1.30222 1.90774 1.38562 1.56369 1.60877 1.88644 1.67151 1.30149 1.43918 0.93477 0.91125 0.95484 0.92593 0.75791 0.92484 0.90468 0.86971 0.88413 0.89755 0.84849 0.74694 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.87 71.98 0.64 -5.13 16 2 C 0.02 1.13 2.64 -12.28 -0.03 1.10 16 3 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 4 C -0.53 -32.12 8.37 25.60 0.21 -31.90 16 5 H 0.05 3.26 6.75 -2.91 -0.02 3.24 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -53.67 11.32 21.44 0.24 -53.43 16 8 Si 0.96 46.31 29.54 68.60 2.03 48.33 16 9 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 C 0.52 25.55 7.15 87.66 0.63 26.17 16 13 O -0.59 -32.45 15.46 -3.02 -0.05 -32.50 16 14 N -0.72 -27.33 5.36 -463.05 -2.48 -29.81 16 15 C 0.11 3.19 5.23 86.38 0.45 3.64 16 16 C 0.07 1.46 3.59 31.06 0.11 1.57 16 17 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.14 -1.53 6.54 31.85 0.21 -1.33 16 19 C -0.13 -1.10 6.55 32.05 0.21 -0.89 16 20 C 0.05 0.85 3.86 30.51 0.12 0.96 16 21 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 22 C 0.51 10.47 7.46 87.66 0.65 11.13 16 23 N -0.83 -7.33 8.86 -173.54 -1.54 -8.87 16 24 O -0.59 -19.61 17.38 15.44 0.27 -19.34 16 25 O -0.38 -10.25 10.11 -130.50 -1.32 -11.57 16 26 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 27 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.26 14.71 8.31 -92.71 -0.77 13.93 16 30 H 0.41 14.43 7.82 -92.70 -0.72 13.70 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.94 7.85 -2.39 -0.02 0.92 16 35 H 0.08 0.78 8.05 -2.39 -0.02 0.76 16 36 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.42 0.28 8.83 -92.71 -0.82 -0.54 16 38 H 0.41 3.16 8.93 -92.71 -0.83 2.34 16 Total: -1.00 -85.14 320.23 -0.47 -85.61 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -1.27 Total: 14.85 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 3.65 Total: 6.73 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.78 Total: -92.11 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -1.10 Total: -63.41 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -85.14 -0.47 -85.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.600 kcal (2) G-P(sol) polarization free energy of solvation -85.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds