Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47465 * 2 1 4 4 C 1.50704 * 109.46795 * 239.99715 * 2 1 3 5 5 H 1.08001 * 120.00243 * 275.09734 * 4 2 1 6 6 C 1.37877 * 119.99927 * 95.11032 * 4 2 1 7 7 N 1.31511 * 120.00061 * 184.90768 * 6 4 2 8 8 Si 1.86804 * 119.99842 * 4.90048 * 6 4 2 9 9 H 1.48502 * 109.47109 * 84.82600 * 8 6 4 10 10 H 1.48497 * 109.47319 * 204.82683 * 8 6 4 11 11 H 1.48500 * 109.47478 * 324.82712 * 8 6 4 12 12 C 1.50704 * 109.47120 * 120.00148 * 2 1 3 13 13 O 1.21280 * 120.00225 * 120.00142 * 12 2 1 14 14 N 1.34773 * 119.99866 * 299.99622 * 12 2 1 15 15 C 1.46501 * 120.00368 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47345 * 180.02562 * 15 14 12 17 17 H 1.08992 * 110.27705 * 304.36455 * 16 15 14 18 18 C 1.55497 * 110.28172 * 182.20083 * 16 15 14 19 19 C 1.55303 * 100.69708 * 204.65412 * 18 16 15 20 20 C 1.54381 * 102.43894 * 34.13247 * 19 18 16 21 21 H 1.08996 * 109.83282 * 98.14088 * 20 19 18 22 22 C 1.50695 * 109.83368 * 219.03207 * 20 19 18 23 23 N 1.34778 * 119.99531 * 294.99698 * 22 20 19 24 24 O 1.21283 * 120.00517 * 114.99609 * 22 20 19 25 25 O 1.43242 * 107.58667 * 338.54368 * 20 19 18 26 26 H 1.09000 * 109.46668 * 175.07611 * 1 2 3 27 27 H 1.09000 * 109.46909 * 295.07387 * 1 2 3 28 28 H 1.08993 * 109.46836 * 55.07609 * 1 2 3 29 29 H 0.97006 * 119.99763 * 179.97438 * 7 6 4 30 30 H 0.97008 * 120.00320 * 0.02562 * 14 12 2 31 31 H 1.09000 * 109.47086 * 60.00131 * 15 14 12 32 32 H 1.09000 * 109.46714 * 300.00623 * 15 14 12 33 33 H 1.09004 * 111.33248 * 86.78704 * 18 16 15 34 34 H 1.09000 * 111.15549 * 322.45072 * 18 16 15 35 35 H 1.09008 * 110.84837 * 275.84161 * 19 18 16 36 36 H 1.09006 * 110.85357 * 152.42503 * 19 18 16 37 37 H 0.96996 * 120.00480 * 0.02562 * 23 22 20 38 38 H 0.97002 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7857 -1.2296 6 6 2.3623 0.0122 -2.3574 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1126 2.4003 -3.6910 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7105 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9402 3.6508 16 6 1.6850 -0.2194 4.8999 17 1 1.9754 0.8309 4.8752 18 6 2.2386 -0.9042 6.1816 19 6 1.1577 -0.4927 7.2180 20 6 -0.1309 -0.4811 6.3679 21 1 -0.6732 -1.4165 6.5057 22 6 -1.0018 0.6793 6.7753 23 7 -1.5354 0.7196 8.0123 24 8 -1.2224 1.5769 5.9901 25 8 0.2568 -0.3397 4.9963 26 1 -0.3633 -1.0239 -0.0882 27 1 -0.3633 0.4355 0.9308 28 1 -0.3633 0.5883 -0.8426 29 1 2.9399 -0.1045 -4.2544 30 1 1.1489 0.5386 2.5436 31 1 3.2856 -0.9398 3.6506 32 1 1.8327 -1.9680 3.6509 33 1 3.2158 -0.5053 6.4537 34 1 2.2774 -1.9871 6.0634 35 1 1.3649 0.4984 7.6219 36 1 1.0876 -1.2290 8.0187 37 1 -1.3587 0.0019 8.6404 38 1 -2.0963 1.4663 8.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261724498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -129.513353 kcal Electronic energy + Delta-G solvation = -20883.248482 eV Core-core repulsion = 17532.358198 eV Total energy + Delta-G solvation = -3350.890284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64282 -38.94489 -38.26263 -34.29549 -34.04405 -33.53213 -32.41741 -31.32811 -30.11123 -26.29161 -25.13088 -23.20801 -22.02117 -21.64410 -20.55757 -19.11596 -18.01176 -17.74624 -16.94639 -16.46045 -16.27709 -15.72338 -15.17782 -14.88122 -14.50858 -14.21090 -13.95748 -13.69402 -13.26550 -12.76181 -12.55875 -12.35937 -12.26611 -12.04535 -11.83737 -11.51462 -11.40064 -11.23453 -10.99697 -10.65606 -10.52271 -10.15370 -10.05483 -9.72382 -9.60324 -9.07024 -8.59503 -8.45457 -8.37706 -5.98691 -3.97144 2.28199 2.90724 3.31997 3.39936 3.40445 3.49863 3.76548 3.91585 3.99340 4.37590 4.40265 4.46572 4.72340 4.74822 4.96243 5.10412 5.21538 5.29177 5.33417 5.41252 5.63323 5.76322 5.94567 6.19382 6.30579 6.38087 6.55620 6.62907 6.66958 6.96018 6.96599 7.12242 7.31021 7.66080 7.93284 8.28753 8.64299 9.17029 9.27799 9.61690 11.14742 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.004062 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.078441 B = 6892.336086 C = 7401.906025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.492 4.492 5 H 0.085 0.915 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.264 1.264 12 C 0.520 3.480 13 O -0.534 6.534 14 N -0.745 5.745 15 C 0.125 3.875 16 C 0.066 3.934 17 H 0.080 0.920 18 C -0.145 4.145 19 C -0.145 4.145 20 C 0.063 3.937 21 H 0.108 0.892 22 C 0.502 3.498 23 N -0.856 5.856 24 O -0.520 6.520 25 O -0.339 6.339 26 H 0.051 0.949 27 H 0.029 0.971 28 H 0.053 0.947 29 H 0.264 0.736 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.400 0.600 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 2.111 27.844 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 H 0.071 0.929 4 C -0.530 4.530 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.308 3.692 13 O -0.409 6.409 14 N -0.400 5.400 15 C 0.000 4.000 16 C 0.008 3.992 17 H 0.098 0.902 18 C -0.184 4.184 19 C -0.183 4.183 20 C 0.001 3.999 21 H 0.125 0.875 22 C 0.286 3.714 23 N -0.423 5.423 24 O -0.394 6.394 25 O -0.257 6.257 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.228 0.772 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -5.030 1.890 26.671 27.207 hybrid contribution -0.321 1.374 0.698 1.574 sum -5.351 3.264 27.370 28.078 Atomic orbital electron populations 1.21934 0.96681 1.01314 0.99220 1.19344 0.94149 0.96905 0.92294 0.92868 1.20768 1.42679 0.96172 0.93423 0.89656 1.25025 0.94733 0.97994 0.95348 1.69891 1.46388 1.35616 1.01658 0.86960 0.79032 0.86787 0.77397 1.20170 1.21315 1.18843 1.21739 0.78923 0.84522 0.84012 1.90566 1.37309 1.26398 1.86632 1.46266 1.55490 1.32903 1.05337 1.21320 0.98801 0.96709 0.83127 1.23504 0.80666 0.99831 0.95177 0.90184 1.23351 0.99262 1.02412 0.93331 1.23102 0.93070 1.03460 0.98661 1.22622 0.96023 0.96550 0.84669 0.87464 1.21128 0.80363 0.88155 0.81802 1.43843 1.54802 1.28388 1.15234 1.90795 1.59164 1.38413 1.51024 1.88634 1.21815 1.93856 1.21381 0.92992 0.95190 0.92832 0.92639 0.76704 0.90602 0.91304 0.88977 0.89244 0.90002 0.88887 0.77187 0.76688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.12 37.16 0.34 -2.56 16 2 C -0.01 -0.13 2.30 -92.92 -0.21 -0.34 16 3 H 0.05 1.28 5.29 -51.93 -0.27 1.00 16 4 C -0.49 -14.69 8.36 -34.44 -0.29 -14.98 16 5 H 0.09 2.87 7.61 -52.49 -0.40 2.47 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 8 Si 0.87 21.75 26.99 -169.99 -4.59 17.16 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.16 6.82 56.52 0.39 -5.77 16 12 C 0.52 12.15 7.15 -10.99 -0.08 12.07 16 13 O -0.53 -14.46 15.77 5.56 0.09 -14.38 16 14 N -0.74 -13.50 5.40 -60.30 -0.33 -13.83 16 15 C 0.13 1.83 5.39 -4.04 -0.02 1.81 16 16 C 0.07 0.74 3.49 -25.41 -0.09 0.65 16 17 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.15 -1.04 6.61 -24.18 -0.16 -1.20 16 19 C -0.15 -0.81 6.50 -24.79 -0.16 -0.97 16 20 C 0.06 0.55 3.95 -27.16 -0.11 0.44 16 21 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 22 C 0.50 5.04 7.30 -10.99 -0.08 4.96 16 23 N -0.86 -4.34 8.85 31.22 0.28 -4.07 16 24 O -0.52 -8.14 17.36 -14.10 -0.24 -8.38 16 25 O -0.34 -4.43 10.23 -54.89 -0.56 -4.99 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.03 0.55 7.43 -51.93 -0.39 0.17 16 28 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.40 6.64 7.83 -40.82 -0.32 6.32 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.60 8.06 -51.93 -0.42 0.18 16 35 H 0.08 0.45 7.84 -51.92 -0.41 0.04 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.40 0.63 8.83 -40.82 -0.36 0.27 16 38 H 0.40 1.79 8.93 -40.82 -0.36 1.43 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -39.31 320.49 -6.17 -45.48 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.46 Total: 3.90 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.96 Total: 1.88 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.72 Total: -45.51 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.72 Total: -27.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.16 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -39.31 -6.17 -45.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.030 kcal (2) G-P(sol) polarization free energy of solvation -39.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds