Wall clock time and date at job start Mon Mar 30 2020 02:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47465 * 2 1 4 4 C 1.50704 * 109.46795 * 239.99715 * 2 1 3 5 5 H 1.08001 * 120.00243 * 275.09734 * 4 2 1 6 6 C 1.37877 * 119.99927 * 95.11032 * 4 2 1 7 7 N 1.31511 * 120.00061 * 184.90768 * 6 4 2 8 8 Si 1.86804 * 119.99842 * 4.90048 * 6 4 2 9 9 H 1.48502 * 109.47109 * 84.82600 * 8 6 4 10 10 H 1.48497 * 109.47319 * 204.82683 * 8 6 4 11 11 H 1.48500 * 109.47478 * 324.82712 * 8 6 4 12 12 C 1.50704 * 109.47120 * 120.00148 * 2 1 3 13 13 O 1.21280 * 120.00225 * 120.00142 * 12 2 1 14 14 N 1.34773 * 119.99866 * 299.99622 * 12 2 1 15 15 C 1.46501 * 120.00368 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47345 * 180.02562 * 15 14 12 17 17 H 1.08992 * 110.27705 * 304.36455 * 16 15 14 18 18 C 1.55497 * 110.28172 * 182.20083 * 16 15 14 19 19 C 1.55303 * 100.69708 * 204.65412 * 18 16 15 20 20 C 1.54381 * 102.43894 * 34.13247 * 19 18 16 21 21 H 1.08996 * 109.83282 * 98.14088 * 20 19 18 22 22 C 1.50695 * 109.83368 * 219.03207 * 20 19 18 23 23 N 1.34778 * 119.99531 * 294.99698 * 22 20 19 24 24 O 1.21283 * 120.00517 * 114.99609 * 22 20 19 25 25 O 1.43242 * 107.58667 * 338.54368 * 20 19 18 26 26 H 1.09000 * 109.46668 * 175.07611 * 1 2 3 27 27 H 1.09000 * 109.46909 * 295.07387 * 1 2 3 28 28 H 1.08993 * 109.46836 * 55.07609 * 1 2 3 29 29 H 0.97006 * 119.99763 * 179.97438 * 7 6 4 30 30 H 0.97008 * 120.00320 * 0.02562 * 14 12 2 31 31 H 1.09000 * 109.47086 * 60.00131 * 15 14 12 32 32 H 1.09000 * 109.46714 * 300.00623 * 15 14 12 33 33 H 1.09004 * 111.33248 * 86.78704 * 18 16 15 34 34 H 1.09000 * 111.15549 * 322.45072 * 18 16 15 35 35 H 1.09008 * 110.84837 * 275.84161 * 19 18 16 36 36 H 1.09006 * 110.85357 * 152.42503 * 19 18 16 37 37 H 0.96996 * 120.00480 * 0.02562 * 23 22 20 38 38 H 0.97002 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7857 -1.2296 6 6 2.3623 0.0122 -2.3574 7 7 2.7081 -0.6129 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1126 2.4003 -3.6910 11 1 1.2029 2.3287 -1.4443 12 6 2.0324 -0.7105 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9402 3.6508 16 6 1.6850 -0.2194 4.8999 17 1 1.9754 0.8309 4.8752 18 6 2.2386 -0.9042 6.1816 19 6 1.1577 -0.4927 7.2180 20 6 -0.1309 -0.4811 6.3679 21 1 -0.6732 -1.4165 6.5057 22 6 -1.0018 0.6793 6.7753 23 7 -1.5354 0.7196 8.0123 24 8 -1.2224 1.5769 5.9901 25 8 0.2568 -0.3397 4.9963 26 1 -0.3633 -1.0239 -0.0882 27 1 -0.3633 0.4355 0.9308 28 1 -0.3633 0.5883 -0.8426 29 1 2.9399 -0.1045 -4.2544 30 1 1.1489 0.5386 2.5436 31 1 3.2856 -0.9398 3.6506 32 1 1.8327 -1.9680 3.6509 33 1 3.2158 -0.5053 6.4537 34 1 2.2774 -1.9871 6.0634 35 1 1.3649 0.4984 7.6219 36 1 1.0876 -1.2290 8.0187 37 1 -1.3587 0.0019 8.6404 38 1 -2.0963 1.4663 8.2744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261724498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:19 Heat of formation + Delta-G solvation = -163.615294 kcal Electronic energy + Delta-G solvation = -20884.727253 eV Core-core repulsion = 17532.358198 eV Total energy + Delta-G solvation = -3352.369055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.41925 -40.52847 -39.27789 -35.73978 -35.60262 -34.80827 -33.42874 -33.02267 -31.18220 -27.42886 -27.14659 -24.44945 -23.18513 -22.60755 -21.27640 -20.86693 -19.13487 -18.62160 -18.45375 -17.87082 -17.13442 -16.92786 -16.66427 -16.07099 -15.90326 -15.58789 -15.11962 -14.97087 -14.52259 -14.27463 -14.13037 -13.72219 -13.49431 -13.08467 -12.96102 -12.94073 -12.66888 -12.63026 -12.31541 -12.11702 -11.91428 -11.75800 -11.33241 -11.25704 -10.76084 -10.66698 -10.43022 -10.40486 -9.97809 -8.27676 -6.33852 1.35904 1.38064 1.48819 1.57485 1.89352 2.25853 2.35188 2.40435 2.89982 3.09346 3.40990 3.71191 3.91788 3.99863 4.09099 4.18225 4.26279 4.40056 4.43802 4.59735 4.62650 4.72892 4.84289 4.86066 4.92693 4.98975 5.11791 5.19923 5.47666 5.56115 5.57570 5.82490 5.96660 6.25829 6.48737 6.64834 6.83652 7.27444 7.35583 7.51361 8.90338 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.004062 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.078441 B = 6892.336086 C = 7401.906025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.010 4.010 3 H 0.070 0.930 4 C -0.506 4.506 5 H 0.024 0.976 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.230 1.230 12 C 0.518 3.482 13 O -0.583 6.583 14 N -0.725 5.725 15 C 0.121 3.879 16 C 0.068 3.932 17 H 0.079 0.921 18 C -0.139 4.139 19 C -0.131 4.131 20 C 0.054 3.946 21 H 0.131 0.869 22 C 0.499 3.501 23 N -0.830 5.830 24 O -0.587 6.587 25 O -0.376 6.376 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.268 0.732 30 H 0.409 0.591 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.420 0.580 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 3.926 31.358 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.545 4.545 5 H 0.042 0.958 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.768 3.232 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.153 1.153 12 C 0.307 3.693 13 O -0.463 6.463 14 N -0.378 5.378 15 C -0.002 4.002 16 C 0.010 3.990 17 H 0.097 0.903 18 C -0.177 4.177 19 C -0.169 4.169 20 C -0.007 4.007 21 H 0.148 0.852 22 C 0.284 3.716 23 N -0.396 5.396 24 O -0.467 6.467 25 O -0.294 6.294 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.245 0.755 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.252 0.748 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.739 3.694 30.315 31.074 hybrid contribution -0.149 0.672 -0.297 0.749 sum -5.887 4.366 30.018 30.900 Atomic orbital electron populations 1.21809 0.94223 1.01009 1.01334 1.19327 0.95972 0.97001 0.90879 0.91231 1.20871 1.43472 0.93852 0.96278 0.95773 1.26052 0.93945 1.04543 0.94384 1.70069 1.47915 1.38333 1.02736 0.85764 0.80475 0.78615 0.78332 1.19186 1.20780 1.15298 1.21442 0.78591 0.83921 0.85392 1.90547 1.39720 1.28510 1.87477 1.46026 1.54205 1.32671 1.04911 1.21555 0.99151 0.96424 0.83109 1.23461 0.80690 0.99655 0.95160 0.90346 1.23377 1.00490 1.02516 0.91315 1.23138 0.90229 1.04937 0.98561 1.22962 0.97556 0.96738 0.83452 0.85189 1.21471 0.80181 0.87657 0.82333 1.43635 1.53097 1.28904 1.13994 1.90764 1.61853 1.40853 1.53198 1.88583 1.22484 1.93966 1.24375 0.94364 0.91516 0.92407 0.92337 0.75496 0.90211 0.92269 0.87150 0.88605 0.89646 0.84930 0.74776 0.76064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 9.12 71.98 0.66 -4.66 16 2 C -0.01 -0.50 2.30 -12.28 -0.03 -0.53 16 3 H 0.07 3.19 5.29 -2.39 -0.01 3.17 16 4 C -0.51 -31.44 8.36 25.60 0.21 -31.23 16 5 H 0.02 1.74 7.61 -2.91 -0.02 1.72 16 6 C 0.01 0.44 5.47 84.66 0.46 0.91 16 7 N -0.95 -62.39 13.96 21.45 0.30 -62.09 16 8 Si 0.95 44.46 26.99 68.60 1.85 46.32 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.23 -9.52 6.82 99.48 0.68 -8.84 16 12 C 0.52 24.51 7.15 87.66 0.63 25.13 16 13 O -0.58 -32.88 15.77 -3.03 -0.05 -32.93 16 14 N -0.72 -25.71 5.40 -463.07 -2.50 -28.21 16 15 C 0.12 3.44 5.39 86.38 0.47 3.91 16 16 C 0.07 1.40 3.49 31.45 0.11 1.51 16 17 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 18 C -0.14 -1.52 6.61 32.25 0.21 -1.31 16 19 C -0.13 -0.90 6.50 31.85 0.21 -0.70 16 20 C 0.05 0.79 3.95 30.32 0.12 0.91 16 21 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 22 C 0.50 9.02 7.30 87.66 0.64 9.66 16 23 N -0.83 -5.99 8.85 -173.53 -1.54 -7.52 16 24 O -0.59 -18.06 17.36 15.75 0.27 -17.79 16 25 O -0.38 -9.20 10.23 -130.19 -1.33 -10.53 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.32 7.43 -2.39 -0.02 2.30 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.27 16.23 8.31 -92.70 -0.77 15.46 16 30 H 0.41 12.93 7.83 -92.70 -0.73 12.20 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.10 0.96 8.06 -2.39 -0.02 0.94 16 35 H 0.08 0.58 7.84 -2.38 -0.02 0.56 16 36 H 0.13 -0.08 8.14 -2.38 -0.02 -0.09 16 37 H 0.42 -0.36 8.83 -92.71 -0.82 -1.18 16 38 H 0.41 2.62 8.93 -92.71 -0.83 1.79 16 Total: -1.00 -92.48 320.49 -0.60 -93.08 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -1.30 Total: 16.06 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 3.69 Total: 3.60 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -3.74 Total: -97.82 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -1.11 Total: -61.24 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.85 Total: 46.32 kcal Total: -92.48 -0.60 -93.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261724498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.531 kcal (2) G-P(sol) polarization free energy of solvation -92.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds