Wall clock time and date at job start Mon Mar 30 2020 00:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48507 * 109.46967 * 240.00019 * 3 2 1 5 5 H 1.48498 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47576 * 120.00048 * 3 2 1 7 7 C 1.38812 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49169 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11500 * 155.35788 * 10 9 7 12 12 N 1.46503 * 113.74036 * 137.95532 * 11 10 9 13 13 C 1.34778 * 119.99771 * 156.92765 * 12 11 10 14 14 O 1.21275 * 120.00497 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99676 * 179.97438 * 13 12 11 16 16 O 1.42901 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.42902 * 113.99584 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.81111 * 26.37313 * 17 16 15 19 19 C 1.54818 * 110.90669 * 149.99790 * 17 16 15 20 20 C 1.54097 * 104.18808 * 139.07449 * 19 17 16 21 21 O 1.43745 * 107.29442 * 2.03270 * 20 19 17 22 22 C 1.44382 * 106.97554 * 333.48168 * 21 20 19 23 23 C 1.47809 * 134.45462 * 359.86706 * 9 7 2 24 24 H 0.97000 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.09000 * 113.77322 * 41.05380 * 10 9 7 26 26 H 1.09000 * 113.76973 * 269.65611 * 10 9 7 27 27 H 1.09003 * 113.73909 * 269.14748 * 11 10 9 28 28 H 0.97005 * 119.99901 * 336.91410 * 12 11 10 29 29 H 1.08998 * 109.47358 * 59.99231 * 15 13 12 30 30 H 1.09008 * 109.47345 * 299.99471 * 15 13 12 31 31 H 1.09004 * 110.48564 * 20.40159 * 19 17 16 32 32 H 1.08989 * 110.60109 * 257.81262 * 19 17 16 33 33 H 1.08998 * 109.88273 * 242.60534 * 20 19 17 34 34 H 1.08997 * 109.87725 * 121.45198 * 20 19 17 35 35 H 1.08999 * 110.61481 * 158.56165 * 22 21 20 36 36 H 1.08997 * 110.62085 * 281.56061 * 22 21 20 37 37 H 1.08997 * 113.77261 * 90.37908 * 23 9 7 38 38 H 1.09004 * 113.83761 * 318.91536 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7203 -3.8101 0.0015 11 6 0.3467 -4.0826 0.6409 12 7 -0.3332 -5.2613 0.0981 13 6 -1.2737 -5.8927 0.8284 14 8 -1.5568 -5.4854 1.9351 15 6 -1.9734 -7.1049 0.2698 16 8 -2.9186 -7.5915 1.2247 17 6 -3.6411 -8.7457 0.7911 18 1 -3.0628 -9.3132 0.0620 19 6 -4.0362 -9.6348 1.9954 20 6 -5.4742 -10.0868 1.6754 21 8 -5.8180 -9.5406 0.3910 22 6 -5.0235 -8.3482 0.2136 23 6 -0.1056 -2.7570 0.0025 24 1 -0.4850 0.8400 -0.0004 25 1 2.5621 -4.0320 0.6574 26 1 1.8328 -4.2355 -0.9958 27 1 0.3584 -4.0632 1.7307 28 1 -0.1066 -5.5872 -0.7870 29 1 -1.2395 -7.8821 0.0568 30 1 -2.4923 -6.8334 -0.6496 31 1 -4.0147 -9.0570 2.9195 32 1 -3.3730 -10.4964 2.0699 33 1 -6.1592 -9.7088 2.4343 34 1 -5.5213 -11.1752 1.6398 35 1 -4.9398 -8.0965 -0.8436 36 1 -5.4491 -7.5163 0.7748 37 1 -0.5311 -2.8722 -0.9944 38 1 -0.7188 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268299393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:31 Heat of formation + Delta-G solvation = -63.145890 kcal Electronic energy + Delta-G solvation = -20302.650513 eV Core-core repulsion = 16954.638138 eV Total energy + Delta-G solvation = -3348.012375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06562 -39.42885 -37.80032 -36.85289 -33.56134 -31.94796 -31.67671 -29.31541 -28.22812 -26.85365 -24.86286 -23.21313 -22.91100 -21.63606 -20.43454 -19.65425 -17.58988 -17.29133 -16.81167 -16.34673 -16.14136 -15.86320 -15.31937 -14.99583 -14.87269 -14.19041 -13.89401 -13.80762 -13.42717 -12.75348 -12.69165 -12.51561 -11.95706 -11.89955 -11.73084 -11.48044 -11.45124 -11.05158 -10.89993 -10.79457 -10.48315 -10.18656 -10.07981 -9.76539 -9.58904 -9.48434 -8.83075 -8.49586 -6.95134 -5.79424 -3.13836 2.76567 2.82384 3.38812 3.42404 3.44497 3.58798 3.96919 4.16658 4.42258 4.45826 4.56162 4.76885 4.83320 4.95112 4.96269 5.05486 5.14411 5.34115 5.36731 5.45229 5.46170 5.54220 5.58797 5.59718 5.97303 6.16750 6.36637 6.40064 6.51779 6.69579 6.83570 7.20648 7.33090 7.53144 7.80765 7.93972 8.48944 9.00267 9.66745 10.52670 11.37179 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.051256 B = 0.002907 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.143611 B = 9630.823779 C = 9866.320229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.082 0.918 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.093 3.907 12 N -0.714 5.714 13 C 0.510 3.490 14 O -0.522 6.522 15 C 0.041 3.959 16 O -0.345 6.345 17 C 0.054 3.946 18 H 0.082 0.918 19 C -0.157 4.157 20 C 0.048 3.952 21 O -0.376 6.376 22 C 0.025 3.975 23 C 0.154 3.846 24 H 0.256 0.744 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.111 0.889 28 H 0.397 0.603 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.757 -20.744 -1.119 21.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.012 4.012 12 N -0.367 5.367 13 C 0.294 3.706 14 O -0.396 6.396 15 C -0.039 4.039 16 O -0.263 6.263 17 C -0.005 4.005 18 H 0.100 0.900 19 C -0.194 4.194 20 C -0.028 4.028 21 O -0.295 6.295 22 C -0.052 4.052 23 C 0.027 3.973 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.129 0.871 28 H 0.230 0.770 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.123 -20.068 -0.246 21.296 hybrid contribution 0.787 0.732 -0.766 1.320 sum -6.336 -19.336 -1.013 20.373 Atomic orbital electron populations 1.69816 1.05062 1.25676 1.55917 1.24830 0.95707 0.97685 1.02066 0.86160 0.78454 0.82920 0.77952 1.21134 1.21493 1.20952 1.18933 0.90225 0.81598 1.44749 0.90070 1.45703 1.02415 0.99157 1.86089 1.22867 0.94578 0.86880 0.97050 1.23940 0.93309 0.83920 0.99987 1.46048 1.39789 1.31027 1.19828 1.20114 0.80315 0.84149 0.85994 1.90738 1.63124 1.65982 1.19804 1.22383 0.92789 0.95927 0.92790 1.88085 1.53350 1.44392 1.40440 1.23735 0.93066 0.87192 0.96518 0.90024 1.22994 0.96903 0.99832 0.99714 1.23140 0.94459 0.99265 0.85984 1.88890 1.63937 1.40650 1.35976 1.24057 0.90055 0.88880 1.02188 1.22716 0.88166 0.89144 0.97227 0.93429 0.93197 0.94694 0.87112 0.76983 0.90238 0.90167 0.88925 0.89732 0.91878 0.89555 0.88542 0.90692 0.95328 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.38 10.70 -15.06 -0.16 -6.55 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -15.52 3.70 -177.92 -0.66 -16.18 16 10 C 0.11 2.22 8.69 -2.97 -0.03 2.19 16 11 C 0.09 1.79 4.40 -70.16 -0.31 1.48 16 12 N -0.71 -10.50 5.37 -55.35 -0.30 -10.80 16 13 C 0.51 7.92 7.91 -10.98 -0.09 7.83 16 14 O -0.52 -10.78 16.12 -14.35 -0.23 -11.01 16 15 C 0.04 0.44 6.25 36.01 0.23 0.67 16 16 O -0.34 -4.34 9.64 -55.14 -0.53 -4.87 16 17 C 0.05 0.49 3.63 -24.72 -0.09 0.40 16 18 H 0.08 0.59 7.83 -51.93 -0.41 0.18 16 19 C -0.16 -1.27 6.78 -25.20 -0.17 -1.44 16 20 C 0.05 0.38 7.70 37.73 0.29 0.67 16 21 O -0.38 -3.88 11.52 -35.23 -0.41 -4.29 16 22 C 0.03 0.24 7.45 38.21 0.28 0.52 16 23 C 0.15 3.67 7.33 -2.85 -0.02 3.64 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 28 H 0.40 4.40 8.71 -40.82 -0.36 4.05 16 29 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 31 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 32 H 0.08 0.54 8.14 -51.94 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -35.15 321.74 -7.54 -42.69 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.71 Total: 0.22 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.16 Total: 9.16 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.32 Total: -53.87 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.17 Total: -20.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.15 -7.54 -42.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268299393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.456 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds