Wall clock time and date at job start Mon Mar 30 2020 00:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48507 * 109.46967 * 240.00019 * 3 2 1 5 5 H 1.48498 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47576 * 120.00048 * 3 2 1 7 7 C 1.38812 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00169 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49169 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11500 * 155.35788 * 10 9 7 12 12 N 1.46503 * 113.74036 * 137.95532 * 11 10 9 13 13 C 1.34778 * 119.99771 * 156.92765 * 12 11 10 14 14 O 1.21275 * 120.00497 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99676 * 179.97438 * 13 12 11 16 16 O 1.42901 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.42902 * 113.99584 * 179.97438 * 16 15 13 18 18 H 1.09001 * 110.81111 * 26.37313 * 17 16 15 19 19 C 1.54818 * 110.90669 * 149.99790 * 17 16 15 20 20 C 1.54097 * 104.18808 * 139.07449 * 19 17 16 21 21 O 1.43745 * 107.29442 * 2.03270 * 20 19 17 22 22 C 1.44382 * 106.97554 * 333.48168 * 21 20 19 23 23 C 1.47809 * 134.45462 * 359.86706 * 9 7 2 24 24 H 0.97000 * 120.00220 * 0.02562 * 1 2 3 25 25 H 1.09000 * 113.77322 * 41.05380 * 10 9 7 26 26 H 1.09000 * 113.76973 * 269.65611 * 10 9 7 27 27 H 1.09003 * 113.73909 * 269.14748 * 11 10 9 28 28 H 0.97005 * 119.99901 * 336.91410 * 12 11 10 29 29 H 1.08998 * 109.47358 * 59.99231 * 15 13 12 30 30 H 1.09008 * 109.47345 * 299.99471 * 15 13 12 31 31 H 1.09004 * 110.48564 * 20.40159 * 19 17 16 32 32 H 1.08989 * 110.60109 * 257.81262 * 19 17 16 33 33 H 1.08998 * 109.88273 * 242.60534 * 20 19 17 34 34 H 1.08997 * 109.87725 * 121.45198 * 20 19 17 35 35 H 1.08999 * 110.61481 * 158.56165 * 22 21 20 36 36 H 1.08997 * 110.62085 * 281.56061 * 22 21 20 37 37 H 1.08997 * 113.77261 * 90.37908 * 23 9 7 38 38 H 1.09004 * 113.83761 * 318.91536 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.7203 -3.8101 0.0015 11 6 0.3467 -4.0826 0.6409 12 7 -0.3332 -5.2613 0.0981 13 6 -1.2737 -5.8927 0.8284 14 8 -1.5568 -5.4854 1.9351 15 6 -1.9734 -7.1049 0.2698 16 8 -2.9186 -7.5915 1.2247 17 6 -3.6411 -8.7457 0.7911 18 1 -3.0628 -9.3132 0.0620 19 6 -4.0362 -9.6348 1.9954 20 6 -5.4742 -10.0868 1.6754 21 8 -5.8180 -9.5406 0.3910 22 6 -5.0235 -8.3482 0.2136 23 6 -0.1056 -2.7570 0.0025 24 1 -0.4850 0.8400 -0.0004 25 1 2.5621 -4.0320 0.6574 26 1 1.8328 -4.2355 -0.9958 27 1 0.3584 -4.0632 1.7307 28 1 -0.1066 -5.5872 -0.7870 29 1 -1.2395 -7.8821 0.0568 30 1 -2.4923 -6.8334 -0.6496 31 1 -4.0147 -9.0570 2.9195 32 1 -3.3730 -10.4964 2.0699 33 1 -6.1592 -9.7088 2.4343 34 1 -5.5213 -11.1752 1.6398 35 1 -4.9398 -8.0965 -0.8436 36 1 -5.4491 -7.5163 0.7748 37 1 -0.5311 -2.8722 -0.9944 38 1 -0.7188 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268299393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:31 Heat of formation + Delta-G solvation = -90.289052 kcal Electronic energy + Delta-G solvation = -20303.827529 eV Core-core repulsion = 16954.638138 eV Total energy + Delta-G solvation = -3349.189391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.11025 -40.48128 -39.27193 -37.87623 -35.15805 -33.79698 -32.44491 -30.20875 -29.56611 -28.26091 -26.62375 -24.88855 -23.70629 -22.31131 -21.73036 -21.35309 -18.79538 -18.41129 -18.28493 -17.25469 -17.20390 -17.08016 -16.84559 -16.07616 -15.90903 -15.72393 -15.32593 -14.89088 -14.60126 -14.18436 -13.74413 -13.53317 -13.34031 -13.22934 -13.18635 -12.81414 -12.65612 -12.55912 -12.39109 -12.29609 -11.97702 -11.69660 -11.53350 -10.89225 -10.87645 -10.82378 -10.50836 -9.97402 -8.98247 -7.92683 -5.28159 1.45066 1.49324 1.55484 1.60781 1.77415 2.46017 2.75173 3.19606 3.25723 3.39570 3.51870 3.76448 3.82727 3.83801 3.97216 4.20225 4.22566 4.30585 4.33478 4.35929 4.52084 4.68961 4.74367 4.75086 4.82252 4.90728 4.95571 5.02191 5.15810 5.22999 5.47304 5.67916 5.74108 5.88726 6.11102 6.63684 6.87109 7.31066 7.57532 8.50164 9.23904 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.051256 B = 0.002907 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.143611 B = 9630.823779 C = 9866.320229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.071 4.071 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.091 0.909 9 N -0.641 5.641 10 C 0.124 3.876 11 C 0.120 3.880 12 N -0.698 5.698 13 C 0.506 3.494 14 O -0.581 6.581 15 C 0.048 3.952 16 O -0.379 6.379 17 C 0.053 3.947 18 H 0.111 0.889 19 C -0.156 4.156 20 C 0.045 3.955 21 O -0.393 6.393 22 C 0.022 3.978 23 C 0.151 3.849 24 H 0.248 0.752 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.420 0.580 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 -23.011 -2.555 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.364 4.364 8 H 0.109 0.891 9 N -0.368 5.368 10 C -0.001 4.001 11 C 0.014 3.986 12 N -0.352 5.352 13 C 0.293 3.707 14 O -0.460 6.460 15 C -0.031 4.031 16 O -0.298 6.298 17 C -0.005 4.005 18 H 0.129 0.871 19 C -0.194 4.194 20 C -0.032 4.032 21 O -0.312 6.312 22 C -0.055 4.055 23 C 0.024 3.976 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.257 0.743 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.832 -22.408 -1.726 23.219 hybrid contribution 0.365 1.342 -0.301 1.423 sum -5.467 -21.066 -2.028 21.858 Atomic orbital electron populations 1.70034 1.06689 1.25795 1.57927 1.25740 0.96571 1.01300 1.02759 0.85078 0.77054 0.78303 0.78440 1.19821 1.22291 1.20132 1.19403 0.91006 0.82910 1.43095 0.89104 1.46047 1.03360 1.00940 1.86435 1.23019 0.94759 0.83403 0.98904 1.23140 0.93294 0.83748 0.98432 1.45727 1.39315 1.29353 1.20793 1.21094 0.79526 0.85017 0.85087 1.90722 1.64815 1.67885 1.22617 1.22461 0.93532 0.94451 0.92631 1.88052 1.54075 1.45881 1.41793 1.23916 0.92758 0.86436 0.97417 0.87111 1.23027 0.97456 1.00228 0.98703 1.23293 0.94299 1.00444 0.85139 1.88870 1.64478 1.40868 1.37011 1.24102 0.90240 0.88173 1.02968 1.22606 0.87319 0.91084 0.96580 0.94287 0.91744 0.91105 0.89454 0.74262 0.86015 0.87081 0.90637 0.87631 0.92079 0.87424 0.86892 0.92617 0.95264 0.95222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 11.39 21.65 0.25 -59.02 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.24 10.70 84.03 0.90 -12.34 16 8 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 9 N -0.64 -32.72 3.70 -716.80 -2.65 -35.38 16 10 C 0.12 4.60 8.69 86.49 0.75 5.35 16 11 C 0.12 4.58 4.40 46.74 0.21 4.78 16 12 N -0.70 -19.06 5.37 -447.43 -2.40 -21.47 16 13 C 0.51 14.96 7.91 87.66 0.69 15.66 16 14 O -0.58 -24.42 16.12 16.03 0.26 -24.16 16 15 C 0.05 0.87 6.25 71.24 0.45 1.32 16 16 O -0.38 -8.85 9.64 -129.94 -1.25 -10.10 16 17 C 0.05 0.84 3.63 31.90 0.12 0.95 16 18 H 0.11 1.11 7.83 -2.39 -0.02 1.09 16 19 C -0.16 -2.26 6.78 31.59 0.21 -2.05 16 20 C 0.04 0.63 7.70 72.35 0.56 1.19 16 21 O -0.39 -7.54 11.52 -148.98 -1.72 -9.26 16 22 C 0.02 0.38 7.45 72.67 0.54 0.93 16 23 C 0.15 7.36 7.33 86.43 0.63 7.99 16 24 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 27 H 0.09 3.79 7.51 -2.39 -0.02 3.77 16 28 H 0.42 7.72 8.71 -92.70 -0.81 6.91 16 29 H 0.12 1.22 8.12 -2.39 -0.02 1.20 16 30 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.03 1.71 7.16 -2.39 -0.02 1.69 16 Total: -1.00 -80.26 321.74 0.28 -79.98 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.25 Total: 11.19 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 5.52 Total: 20.15 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -4.81 Total: -115.86 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -2.71 Total: -43.52 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -80.26 0.28 -79.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268299393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.311 kcal (2) G-P(sol) polarization free energy of solvation -80.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds