Wall clock time and date at job start Mon Mar 30 2020 02:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46562 * 2 1 4 4 C 1.52995 * 109.47186 * 240.00034 * 2 1 3 5 5 N 1.46503 * 109.47092 * 184.99805 * 4 2 1 6 6 C 1.46501 * 119.99898 * 269.99982 * 5 4 2 7 7 C 1.36938 * 119.99664 * 90.00301 * 5 4 2 8 8 H 1.07995 * 120.00223 * 20.28896 * 7 5 4 9 9 C 1.38814 * 119.99343 * 200.29328 * 7 5 4 10 10 N 1.31622 * 120.00447 * 15.02338 * 9 7 5 11 11 Si 1.86802 * 119.99570 * 195.02053 * 9 7 5 12 12 H 1.48501 * 109.47242 * 85.00844 * 11 9 7 13 13 H 1.48502 * 109.47088 * 205.00853 * 11 9 7 14 14 H 1.48496 * 109.47313 * 325.00704 * 11 9 7 15 15 N 1.46501 * 109.47087 * 119.99953 * 2 1 3 16 16 C 1.34778 * 120.00124 * 275.00062 * 15 2 1 17 17 O 1.21741 * 119.99837 * 0.02562 * 16 15 2 18 18 C 1.46370 * 120.00115 * 180.02562 * 16 15 2 19 19 C 1.33970 * 119.23373 * 0.02562 * 18 16 15 20 20 O 1.35009 * 121.68989 * 180.37222 * 19 18 16 21 21 C 1.43243 * 116.76228 * 342.81699 * 20 19 18 22 22 C 1.53551 * 108.08990 * 45.48764 * 21 20 19 23 23 O 1.36221 * 119.23316 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.47093 * 299.99450 * 1 2 3 25 25 H 1.08994 * 109.47229 * 60.00022 * 1 2 3 26 26 H 1.09003 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46938 * 304.99811 * 4 2 1 28 28 H 1.08998 * 109.47314 * 64.99688 * 4 2 1 29 29 H 1.08997 * 109.47079 * 95.10588 * 6 5 4 30 30 H 1.09003 * 109.46886 * 215.10729 * 6 5 4 31 31 H 1.09001 * 109.46993 * 335.10426 * 6 5 4 32 32 H 0.96991 * 120.00207 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00067 * 94.99983 * 15 2 1 34 34 H 1.08001 * 119.15527 * 0.34524 * 19 18 16 35 35 H 1.09007 * 109.73869 * 285.84314 * 21 20 19 36 36 H 1.08998 * 109.73861 * 165.13809 * 21 20 19 37 37 H 1.09002 * 109.75408 * 182.21829 * 22 21 20 38 38 H 1.08997 * 109.75131 * 61.47500 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3344 0.2342 -1.7612 7 6 4.0850 -1.9158 -0.6023 8 1 3.5229 -2.8296 -0.4788 9 6 5.4005 -1.8455 -0.1646 10 7 5.9905 -0.6757 -0.0382 11 14 6.3334 -3.4112 0.2450 12 1 6.9259 -3.9733 -0.9953 13 1 7.4150 -3.1036 1.2149 14 1 5.4010 -4.4014 0.8410 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8571 1.1628 2.4119 18 6 2.6355 -0.7081 3.5521 19 6 2.9507 -2.0079 3.4744 20 8 3.3985 -2.6945 4.5471 21 6 3.8804 -1.9214 5.6525 22 6 2.8768 -0.7896 5.9163 23 8 2.7591 -0.0136 4.7175 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 4.6152 0.9372 -0.9771 30 1 5.2331 -0.2043 -2.1950 31 1 3.7755 0.7586 -2.5363 32 1 6.9098 -0.6267 0.2672 33 1 2.2491 -1.6318 1.1526 34 1 2.8433 -2.5197 2.5294 35 1 4.8556 -1.4994 5.4094 36 1 3.9624 -2.5541 6.5363 37 1 3.2375 -0.1593 6.7292 38 1 1.9066 -1.2113 6.1789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275497560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:53 Heat of formation + Delta-G solvation = -61.973942 kcal Electronic energy + Delta-G solvation = -22125.880345 eV Core-core repulsion = 18777.918789 eV Total energy + Delta-G solvation = -3347.961556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79323 -38.87275 -36.85223 -36.09924 -33.97169 -32.42232 -31.06200 -30.04968 -28.14810 -26.17828 -25.61777 -25.14981 -22.39049 -21.28677 -20.07524 -19.14010 -18.08368 -17.90342 -16.72269 -16.13457 -15.44855 -15.10115 -14.76508 -14.66180 -14.38847 -13.98558 -13.78604 -13.59732 -13.14867 -13.00093 -12.81298 -12.24735 -12.07045 -11.80594 -11.39518 -11.31256 -10.89274 -10.86202 -10.71461 -10.48276 -10.39509 -10.25032 -10.06536 -9.84359 -9.26311 -8.58982 -8.35902 -7.85722 -6.82360 -5.76486 -3.21052 1.74833 3.06413 3.33058 3.36240 3.39634 3.42122 3.85245 4.27360 4.40097 4.44310 4.89121 4.97789 5.13951 5.32955 5.37055 5.45026 5.51958 5.54917 5.66299 5.89145 5.98959 6.13594 6.17843 6.26119 6.44643 6.53584 6.74094 6.88140 6.96302 7.24226 7.36813 7.57823 7.67365 7.78724 8.25894 8.32907 8.90477 9.17229 9.82410 10.31923 11.27356 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.009231 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.338713 B = 3032.612530 C = 4424.220325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 H 0.079 0.921 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.263 4.263 8 H 0.067 0.933 9 C 0.009 3.991 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.278 1.278 15 N -0.680 5.680 16 C 0.579 3.421 17 O -0.546 6.546 18 C -0.063 4.063 19 C 0.007 3.993 20 O -0.302 6.302 21 C 0.012 3.988 22 C 0.020 3.980 23 O -0.288 6.288 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.042 0.958 31 H -0.002 1.002 32 H 0.253 0.747 33 H 0.401 0.599 34 H 0.182 0.818 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 -3.253 7.150 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.392 4.392 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.203 1.203 15 N -0.332 5.332 16 C 0.365 3.635 17 O -0.425 6.425 18 C -0.111 4.111 19 C -0.059 4.059 20 O -0.215 6.215 21 C -0.063 4.063 22 C -0.057 4.057 23 O -0.201 6.201 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.238 0.762 34 H 0.199 0.801 35 H 0.098 0.902 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.291 -2.370 7.257 10.556 hybrid contribution 1.006 -1.231 0.525 1.674 sum -6.284 -3.600 7.782 10.630 Atomic orbital electron populations 1.22171 0.96723 1.01355 1.01708 1.21894 0.91895 0.98523 0.86396 0.90280 1.21205 0.85935 0.97984 0.93569 1.43903 0.98899 1.22655 1.66550 1.20802 0.92890 0.90433 0.94080 1.19061 0.96019 0.89907 1.34231 0.91502 1.24942 0.98531 0.96105 0.99534 1.70090 1.12748 1.21757 1.49203 0.86449 0.80145 0.83212 0.77816 1.21452 1.21836 1.20329 1.45548 1.65513 1.14083 1.08083 1.16970 0.78049 0.86294 0.82181 1.90764 1.51352 1.15237 1.85164 1.20518 1.09699 0.92176 0.88743 1.23214 0.98486 0.92582 0.91663 1.86081 1.76455 1.34637 1.24322 1.23678 0.97712 0.94956 0.89974 1.23588 0.99833 0.94831 0.87417 1.86413 1.89097 1.32694 1.11938 0.92843 0.92094 0.92929 0.93221 0.92708 0.95241 0.93886 0.98367 0.93692 0.76165 0.80129 0.90154 0.86519 0.86524 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 37.16 0.35 -2.08 16 2 C 0.12 2.26 2.88 -67.93 -0.20 2.06 16 3 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.67 5.36 -4.04 -0.02 2.65 16 5 N -0.60 -14.03 2.82 -181.12 -0.51 -14.54 16 6 C 0.16 3.94 9.02 59.85 0.54 4.48 16 7 C -0.26 -6.55 8.02 -15.06 -0.12 -6.67 16 8 H 0.07 1.59 7.86 -52.49 -0.41 1.17 16 9 C 0.01 0.23 5.06 -17.43 -0.09 0.14 16 10 N -0.89 -25.32 10.67 55.49 0.59 -24.73 16 11 Si 0.89 20.89 29.58 -169.99 -5.03 15.86 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 N -0.68 -13.37 4.42 -55.20 -0.24 -13.62 16 16 C 0.58 12.53 7.69 -12.99 -0.10 12.43 16 17 O -0.55 -13.54 16.58 -10.06 -0.17 -13.71 16 18 C -0.06 -1.22 6.61 -37.81 -0.25 -1.47 16 19 C 0.01 0.11 10.57 29.23 0.31 0.42 16 20 O -0.30 -4.76 10.47 -30.85 -0.32 -5.09 16 21 C 0.01 0.15 7.29 37.44 0.27 0.43 16 22 C 0.02 0.25 7.31 37.44 0.27 0.52 16 23 O -0.29 -5.36 10.28 -45.78 -0.47 -5.83 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.87 8.03 -51.93 -0.42 0.46 16 28 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 29 H 0.03 0.80 7.40 -51.93 -0.38 0.41 16 30 H 0.04 1.11 7.21 -51.93 -0.37 0.74 16 31 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.40 7.51 5.24 -40.82 -0.21 7.30 16 34 H 0.18 2.99 6.08 -52.49 -0.32 2.67 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -32.75 315.84 -5.84 -38.60 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.42 Total: 5.39 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 0.97 Total: 12.91 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.16 Total: -52.88 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.96 Total: -24.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.75 -5.84 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275497560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.377 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds