Wall clock time and date at job start Mon Mar 30 2020 02:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46562 * 2 1 4 4 C 1.52995 * 109.47186 * 240.00034 * 2 1 3 5 5 N 1.46503 * 109.47092 * 184.99805 * 4 2 1 6 6 C 1.46501 * 119.99898 * 269.99982 * 5 4 2 7 7 C 1.36938 * 119.99664 * 90.00301 * 5 4 2 8 8 H 1.07995 * 120.00223 * 20.28896 * 7 5 4 9 9 C 1.38814 * 119.99343 * 200.29328 * 7 5 4 10 10 N 1.31622 * 120.00447 * 15.02338 * 9 7 5 11 11 Si 1.86802 * 119.99570 * 195.02053 * 9 7 5 12 12 H 1.48501 * 109.47242 * 85.00844 * 11 9 7 13 13 H 1.48502 * 109.47088 * 205.00853 * 11 9 7 14 14 H 1.48496 * 109.47313 * 325.00704 * 11 9 7 15 15 N 1.46501 * 109.47087 * 119.99953 * 2 1 3 16 16 C 1.34778 * 120.00124 * 275.00062 * 15 2 1 17 17 O 1.21741 * 119.99837 * 0.02562 * 16 15 2 18 18 C 1.46370 * 120.00115 * 180.02562 * 16 15 2 19 19 C 1.33970 * 119.23373 * 0.02562 * 18 16 15 20 20 O 1.35009 * 121.68989 * 180.37222 * 19 18 16 21 21 C 1.43243 * 116.76228 * 342.81699 * 20 19 18 22 22 C 1.53551 * 108.08990 * 45.48764 * 21 20 19 23 23 O 1.36221 * 119.23316 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.47093 * 299.99450 * 1 2 3 25 25 H 1.08994 * 109.47229 * 60.00022 * 1 2 3 26 26 H 1.09003 * 109.46562 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46938 * 304.99811 * 4 2 1 28 28 H 1.08998 * 109.47314 * 64.99688 * 4 2 1 29 29 H 1.08997 * 109.47079 * 95.10588 * 6 5 4 30 30 H 1.09003 * 109.46886 * 215.10729 * 6 5 4 31 31 H 1.09001 * 109.46993 * 335.10426 * 6 5 4 32 32 H 0.96991 * 120.00207 * 180.02562 * 10 9 7 33 33 H 0.97002 * 120.00067 * 94.99983 * 15 2 1 34 34 H 1.08001 * 119.15527 * 0.34524 * 19 18 16 35 35 H 1.09007 * 109.73869 * 285.84314 * 21 20 19 36 36 H 1.08998 * 109.73861 * 165.13809 * 21 20 19 37 37 H 1.09002 * 109.75408 * 182.21829 * 22 21 20 38 38 H 1.08997 * 109.75131 * 61.47500 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3344 0.2342 -1.7612 7 6 4.0850 -1.9158 -0.6023 8 1 3.5229 -2.8296 -0.4788 9 6 5.4005 -1.8455 -0.1646 10 7 5.9905 -0.6757 -0.0382 11 14 6.3334 -3.4112 0.2450 12 1 6.9259 -3.9733 -0.9953 13 1 7.4150 -3.1036 1.2149 14 1 5.4010 -4.4014 0.8410 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8571 1.1628 2.4119 18 6 2.6355 -0.7081 3.5521 19 6 2.9507 -2.0079 3.4744 20 8 3.3985 -2.6945 4.5471 21 6 3.8804 -1.9214 5.6525 22 6 2.8768 -0.7896 5.9163 23 8 2.7591 -0.0136 4.7175 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1583 -2.1369 29 1 4.6152 0.9372 -0.9771 30 1 5.2331 -0.2043 -2.1950 31 1 3.7755 0.7586 -2.5363 32 1 6.9098 -0.6267 0.2672 33 1 2.2491 -1.6318 1.1526 34 1 2.8433 -2.5197 2.5294 35 1 4.8556 -1.4994 5.4094 36 1 3.9624 -2.5541 6.5363 37 1 3.2375 -0.1593 6.7292 38 1 1.9066 -1.2113 6.1789 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275497560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:52 Heat of formation + Delta-G solvation = -84.893905 kcal Electronic energy + Delta-G solvation = -22126.874229 eV Core-core repulsion = 18777.918789 eV Total energy + Delta-G solvation = -3348.955440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.07784 -40.43943 -38.24441 -37.72499 -35.72762 -33.90050 -32.76250 -31.45268 -29.44575 -28.02333 -27.34958 -26.36909 -23.93969 -22.94858 -21.60044 -20.52320 -19.42934 -19.25564 -18.58749 -17.41268 -16.99219 -16.83101 -16.24502 -16.00389 -15.78014 -15.52001 -15.25975 -15.14277 -14.76252 -14.57983 -14.29500 -13.85086 -13.38659 -13.13677 -13.09084 -12.84311 -12.70245 -12.50376 -12.15208 -11.98205 -11.93859 -11.90837 -11.67297 -11.64768 -10.87915 -10.57914 -9.97673 -9.21690 -8.77122 -7.76004 -5.21349 0.30949 1.48322 1.51426 1.57208 1.75927 2.11742 2.33543 2.54136 2.88449 3.39466 3.40914 3.71974 3.82423 3.95514 4.01491 4.16364 4.25959 4.41525 4.45927 4.55394 4.59646 4.79465 4.83863 4.86620 4.93367 5.03565 5.20865 5.35259 5.42384 5.65047 5.68343 5.76159 5.79502 6.27071 6.35693 6.70895 7.18246 7.30920 7.92211 8.38189 9.27549 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.009231 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.338713 B = 3032.612530 C = 4424.220325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 H 0.041 0.959 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.177 3.823 7 C -0.249 4.249 8 H 0.087 0.913 9 C -0.046 4.046 10 N -0.934 5.934 11 Si 0.948 3.052 12 H -0.292 1.292 13 H -0.309 1.309 14 H -0.255 1.255 15 N -0.674 5.674 16 C 0.569 3.431 17 O -0.592 6.592 18 C -0.091 4.091 19 C 0.031 3.969 20 O -0.306 6.306 21 C 0.007 3.993 22 C 0.013 3.987 23 O -0.322 6.322 24 H 0.036 0.964 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H -0.009 1.009 30 H 0.018 0.982 31 H 0.030 0.970 32 H 0.241 0.759 33 H 0.406 0.594 34 H 0.188 0.812 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.148 0.852 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.737 -5.523 7.567 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.059 0.941 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.032 3.968 7 C -0.379 4.379 8 H 0.104 0.896 9 C -0.242 4.242 10 N -0.581 5.581 11 Si 0.778 3.222 12 H -0.220 1.220 13 H -0.237 1.237 14 H -0.179 1.179 15 N -0.326 5.326 16 C 0.357 3.643 17 O -0.475 6.475 18 C -0.140 4.140 19 C -0.036 4.036 20 O -0.218 6.218 21 C -0.068 4.068 22 C -0.062 4.062 23 O -0.237 6.237 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.009 0.991 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.244 0.756 34 H 0.204 0.796 35 H 0.089 0.911 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.769 -4.696 7.666 12.558 hybrid contribution 1.413 -0.547 0.432 1.576 sum -7.356 -5.243 8.098 12.132 Atomic orbital electron populations 1.22045 0.93397 1.03002 1.02157 1.21861 0.94409 0.96317 0.86060 0.94089 1.21435 0.83121 0.99745 0.94268 1.44155 1.00911 1.22020 1.66241 1.20503 0.92798 0.90015 0.93531 1.19500 0.95833 0.90824 1.31786 0.89566 1.25596 0.99772 0.98073 1.00736 1.70288 1.12300 1.23777 1.51721 0.85559 0.78883 0.80869 0.76932 1.21952 1.23655 1.17851 1.45578 1.64887 1.14160 1.07953 1.17447 0.77540 0.85988 0.83331 1.90719 1.53633 1.17116 1.86015 1.20272 1.12107 0.92799 0.88789 1.23268 0.96295 0.91657 0.92412 1.86075 1.75864 1.35261 1.24627 1.24056 0.96865 0.95647 0.90188 1.24019 1.00942 0.95259 0.85954 1.86339 1.89470 1.34787 1.13079 0.94447 0.89635 0.90584 0.90723 0.90342 0.99109 0.96366 0.95132 0.94959 0.75590 0.79561 0.91105 0.81830 0.83400 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 9.48 71.98 0.68 -3.45 16 2 C 0.12 4.41 2.88 44.99 0.13 4.54 16 3 H 0.04 1.82 7.58 -2.39 -0.02 1.80 16 4 C 0.14 4.96 5.36 86.38 0.46 5.42 16 5 N -0.61 -28.00 2.82 -726.93 -2.05 -30.05 16 6 C 0.18 8.66 9.02 127.77 1.15 9.81 16 7 C -0.25 -12.09 8.02 84.03 0.67 -11.42 16 8 H 0.09 3.81 7.86 -2.91 -0.02 3.79 16 9 C -0.05 -2.43 5.06 84.86 0.43 -2.00 16 10 N -0.93 -54.47 10.67 21.65 0.23 -54.24 16 11 Si 0.95 42.61 29.58 68.60 2.03 44.64 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.31 -14.66 7.11 99.48 0.71 -13.95 16 14 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 15 N -0.67 -26.27 4.42 -446.76 -1.97 -28.24 16 16 C 0.57 25.18 7.69 86.36 0.66 25.84 16 17 O -0.59 -30.62 16.58 10.07 0.17 -30.45 16 18 C -0.09 -3.57 6.61 23.42 0.15 -3.41 16 19 C 0.03 1.03 10.57 66.85 0.71 1.74 16 20 O -0.31 -8.92 10.47 -69.31 -0.73 -9.64 16 21 C 0.01 0.15 7.29 72.17 0.53 0.68 16 22 C 0.01 0.30 7.31 72.17 0.53 0.83 16 23 O -0.32 -12.01 10.28 -71.86 -0.74 -12.75 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 28 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 29 H -0.01 -0.53 7.40 -2.39 -0.02 -0.55 16 30 H 0.02 0.94 7.21 -2.39 -0.02 0.93 16 31 H 0.03 1.26 7.84 -2.39 -0.02 1.24 16 32 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.41 14.67 5.24 -92.71 -0.49 14.18 16 34 H 0.19 5.87 6.08 -2.91 -0.02 5.85 16 35 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.98 315.84 3.63 -70.35 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.58 Total: 21.79 kcal Atomic # 6 Polarization: 22.48 SS G_CDS: 6.11 Total: 28.59 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.79 Total: -112.53 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -1.30 Total: -52.84 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.98 3.63 -70.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275497560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.539 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds