Wall clock time and date at job start Mon Mar 30 2020 02:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.36939 * 120.00073 * 179.72302 * 5 4 2 7 7 H 1.08004 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47227 * 89.99498 * 10 8 6 12 12 H 1.48496 * 109.47434 * 209.99930 * 10 8 6 13 13 H 1.48507 * 109.46769 * 330.00032 * 10 8 6 14 14 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 15 15 C 1.34772 * 119.99614 * 85.00215 * 14 2 1 16 16 O 1.21279 * 120.00140 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99681 * 179.97438 * 15 14 2 18 18 C 1.53001 * 109.47382 * 179.97438 * 17 15 14 19 19 H 1.08999 * 110.61283 * 303.39250 * 18 17 15 20 20 C 1.54258 * 110.68965 * 66.45477 * 18 17 15 21 21 O 1.45590 * 106.37055 * 117.32673 * 20 18 17 22 22 C 1.34531 * 109.63523 * 21.27234 * 21 20 18 23 23 O 1.20823 * 126.43149 * 147.14921 * 22 21 20 24 24 C 1.51787 * 107.13653 * 327.16890 * 22 21 20 25 25 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 26 26 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 27 27 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 29 29 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 30 30 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 31 31 H 0.97000 * 120.00679 * 179.97438 * 9 8 6 32 32 H 0.96996 * 119.99620 * 265.00312 * 14 2 1 33 33 H 1.08997 * 109.47735 * 300.00775 * 17 15 14 34 34 H 1.09007 * 109.46802 * 60.00160 * 17 15 14 35 35 H 1.08996 * 110.08377 * 236.56244 * 20 18 17 36 36 H 1.09009 * 110.07455 * 358.10718 * 20 18 17 37 37 H 1.08996 * 110.61611 * 272.11368 * 24 22 21 38 38 H 1.09007 * 110.60609 * 149.14098 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1843 -1.4336 2.2096 7 1 3.6475 -1.8351 3.0564 8 6 5.5677 -1.5328 2.1542 9 7 6.2218 -1.0439 1.1219 10 14 6.5011 -2.3615 3.5440 11 1 6.6338 -3.8121 3.2553 12 1 7.8513 -1.7552 3.6641 13 1 5.7601 -2.1760 4.8175 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0183 -2.3572 16 8 1.8590 1.1585 -2.4115 17 6 2.6498 -0.7287 -3.5875 18 6 2.7006 0.2542 -4.7589 19 1 1.7213 0.7027 -4.9263 20 6 3.7637 1.3439 -4.5104 21 8 4.7572 1.1959 -5.5644 22 6 4.2170 0.5371 -6.6055 23 8 4.4831 0.6987 -7.7729 24 6 3.2101 -0.4470 -6.0383 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 1.7517 -0.1584 2.1370 30 1 3.9825 -0.4623 0.4318 31 1 7.1886 -1.1129 1.0834 32 1 2.2489 -1.6319 -1.1526 33 1 3.6490 -1.1206 -3.3980 34 1 1.9774 -1.5510 -3.8325 35 1 3.3065 2.3319 -4.5632 36 1 4.2284 1.1978 -3.5352 37 1 3.6941 -1.3918 -5.7912 38 1 2.3917 -0.6061 -6.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321822760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:24 Heat of formation + Delta-G solvation = -116.249387 kcal Electronic energy + Delta-G solvation = -20801.426074 eV Core-core repulsion = 17451.110958 eV Total energy + Delta-G solvation = -3350.315115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12663 -39.60707 -37.61871 -36.33550 -34.25738 -33.71218 -31.53179 -30.15445 -28.89191 -27.21836 -25.73375 -22.87414 -22.02549 -21.48009 -20.54039 -20.02213 -17.50857 -17.27725 -16.91716 -16.73737 -16.35772 -15.84247 -15.29133 -14.87257 -14.36555 -13.81893 -13.74262 -13.44587 -13.40785 -13.17134 -12.87983 -12.42922 -12.32095 -12.16561 -12.09832 -11.75749 -11.62105 -11.27888 -10.96690 -10.89029 -10.55822 -10.52695 -10.35951 -10.12023 -9.81561 -9.66248 -8.99126 -8.80477 -7.04023 -5.85572 -3.15615 1.78454 2.77788 3.27998 3.31508 3.37865 3.43606 3.45355 3.83889 4.06635 4.41487 4.50688 4.52332 4.90168 5.09645 5.11174 5.22597 5.33408 5.36353 5.40591 5.46200 5.48376 5.57802 5.66873 5.80949 5.93801 6.01269 6.10698 6.30874 6.39700 6.61394 6.63745 6.84619 7.29248 7.61403 7.74148 8.32391 8.39867 9.44534 9.99368 10.34750 11.36755 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.004469 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.183662 B = 6264.286690 C = 7510.466676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.245 4.245 7 H 0.071 0.929 8 C -0.010 4.010 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.709 5.709 15 C 0.513 3.487 16 O -0.550 6.550 17 C -0.137 4.137 18 C -0.102 4.102 19 H 0.106 0.894 20 C 0.067 3.933 21 O -0.356 6.356 22 C 0.488 3.512 23 O -0.456 6.456 24 C -0.185 4.185 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.405 0.595 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.068 -0.625 -10.303 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 H 0.105 0.895 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.376 4.376 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.579 5.579 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.359 5.359 15 C 0.299 3.701 16 O -0.429 6.429 17 C -0.177 4.177 18 C -0.121 4.121 19 H 0.124 0.876 20 C -0.007 4.007 21 O -0.274 6.274 22 C 0.328 3.672 23 O -0.338 6.338 24 C -0.223 4.223 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.240 0.760 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.894 0.305 -10.689 15.265 hybrid contribution 0.774 -0.945 0.762 1.440 sum -10.121 -0.641 -9.926 14.191 Atomic orbital electron populations 1.22092 0.95493 1.01825 1.02147 1.21255 0.93329 0.98022 0.84623 0.89486 1.20987 0.86877 0.96963 0.93614 1.42349 0.99691 1.70489 1.25142 1.19214 0.89442 1.29878 0.99086 0.91138 1.24741 0.96418 1.01437 0.98062 1.69651 1.07358 1.50777 1.30149 0.86192 0.79436 0.78962 0.81574 1.21679 1.21722 1.20739 1.46013 1.66078 1.14503 1.09314 1.20452 0.77563 0.87349 0.84741 1.90681 1.51013 1.15893 1.85327 1.21790 1.04586 0.99011 0.92327 1.22129 1.00997 0.95723 0.93284 0.87592 1.24094 0.87086 0.99906 0.89620 1.87123 1.39514 1.73523 1.27240 1.23314 0.79090 0.80009 0.84749 1.90697 1.61201 1.66883 1.15049 1.23147 1.00415 1.00440 0.98300 0.91675 0.92464 0.92611 0.95798 0.94906 0.78049 0.93403 0.76014 0.87644 0.88039 0.88910 0.87158 0.86321 0.87204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 37.16 0.35 -1.57 16 2 C 0.13 2.01 2.73 -67.93 -0.19 1.82 16 3 H 0.09 1.52 7.58 -51.93 -0.39 1.12 16 4 C 0.14 2.61 5.82 -4.04 -0.02 2.58 16 5 N -0.73 -17.19 5.43 -59.91 -0.33 -17.52 16 6 C -0.25 -6.52 9.99 -15.06 -0.15 -6.67 16 7 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 8 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 9 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 10 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.71 -9.67 4.52 -53.80 -0.24 -9.92 16 15 C 0.51 6.70 7.33 -10.99 -0.08 6.62 16 16 O -0.55 -8.70 14.77 5.56 0.08 -8.61 16 17 C -0.14 -1.25 4.93 -27.88 -0.14 -1.39 16 18 C -0.10 -0.93 2.75 -89.16 -0.24 -1.17 16 19 H 0.11 0.92 8.04 -51.93 -0.42 0.50 16 20 C 0.07 0.76 6.50 37.82 0.25 1.01 16 21 O -0.36 -4.82 11.07 -39.61 -0.44 -5.26 16 22 C 0.49 6.13 8.57 36.54 0.31 6.45 16 23 O -0.46 -7.14 18.00 -18.28 -0.33 -7.47 16 24 C -0.18 -1.51 6.58 -26.54 -0.17 -1.69 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 9.60 7.33 -40.82 -0.30 9.30 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.41 5.20 8.60 -40.82 -0.35 4.85 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.39 7.33 -51.92 -0.38 1.01 16 37 H 0.12 0.80 7.82 -51.93 -0.41 0.39 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -32.66 324.02 -6.45 -39.11 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.60 Total: 8.88 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -0.18 Total: 5.62 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.16 Total: -53.79 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.69 Total: -21.34 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.66 -6.45 -39.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321822760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.139 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds