Wall clock time and date at job start Mon Mar 30 2020 02:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47725 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00163 * 2 1 3 5 5 N 1.46506 * 109.47237 * 174.99470 * 4 2 1 6 6 C 1.36939 * 120.00073 * 179.72302 * 5 4 2 7 7 H 1.08004 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47227 * 89.99498 * 10 8 6 12 12 H 1.48496 * 109.47434 * 209.99930 * 10 8 6 13 13 H 1.48507 * 109.46769 * 330.00032 * 10 8 6 14 14 N 1.46510 * 109.46806 * 239.99775 * 2 1 3 15 15 C 1.34772 * 119.99614 * 85.00215 * 14 2 1 16 16 O 1.21279 * 120.00140 * 0.02562 * 15 14 2 17 17 C 1.50700 * 119.99681 * 179.97438 * 15 14 2 18 18 C 1.53001 * 109.47382 * 179.97438 * 17 15 14 19 19 H 1.08999 * 110.61283 * 303.39250 * 18 17 15 20 20 C 1.54258 * 110.68965 * 66.45477 * 18 17 15 21 21 O 1.45590 * 106.37055 * 117.32673 * 20 18 17 22 22 C 1.34531 * 109.63523 * 21.27234 * 21 20 18 23 23 O 1.20823 * 126.43149 * 147.14921 * 22 21 20 24 24 C 1.51787 * 107.13653 * 327.16890 * 22 21 20 25 25 H 1.09004 * 109.46798 * 300.00328 * 1 2 3 26 26 H 1.08995 * 109.47105 * 59.99578 * 1 2 3 27 27 H 1.08998 * 109.47635 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47671 * 54.99810 * 4 2 1 29 29 H 1.08998 * 109.47454 * 294.99808 * 4 2 1 30 30 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 31 31 H 0.97000 * 120.00679 * 179.97438 * 9 8 6 32 32 H 0.96996 * 119.99620 * 265.00312 * 14 2 1 33 33 H 1.08997 * 109.47735 * 300.00775 * 17 15 14 34 34 H 1.09007 * 109.46802 * 60.00160 * 17 15 14 35 35 H 1.08996 * 110.08377 * 236.56244 * 20 18 17 36 36 H 1.09009 * 110.07455 * 358.10718 * 20 18 17 37 37 H 1.08996 * 110.61611 * 272.11368 * 24 22 21 38 38 H 1.09007 * 110.60609 * 149.14098 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1843 -1.4336 2.2096 7 1 3.6475 -1.8351 3.0564 8 6 5.5677 -1.5328 2.1542 9 7 6.2218 -1.0439 1.1219 10 14 6.5011 -2.3615 3.5440 11 1 6.6338 -3.8121 3.2553 12 1 7.8513 -1.7552 3.6641 13 1 5.7601 -2.1760 4.8175 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0183 -2.3572 16 8 1.8590 1.1585 -2.4115 17 6 2.6498 -0.7287 -3.5875 18 6 2.7006 0.2542 -4.7589 19 1 1.7213 0.7027 -4.9263 20 6 3.7637 1.3439 -4.5104 21 8 4.7572 1.1959 -5.5644 22 6 4.2170 0.5371 -6.6055 23 8 4.4831 0.6987 -7.7729 24 6 3.2101 -0.4470 -6.0383 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2952 29 1 1.7517 -0.1584 2.1370 30 1 3.9825 -0.4623 0.4318 31 1 7.1886 -1.1129 1.0834 32 1 2.2489 -1.6319 -1.1526 33 1 3.6490 -1.1206 -3.3980 34 1 1.9774 -1.5510 -3.8325 35 1 3.3065 2.3319 -4.5632 36 1 4.2284 1.1978 -3.5352 37 1 3.6941 -1.3918 -5.7912 38 1 2.3917 -0.6061 -6.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321822760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:23 Heat of formation + Delta-G solvation = -139.252201 kcal Electronic energy + Delta-G solvation = -20802.423551 eV Core-core repulsion = 17451.110958 eV Total energy + Delta-G solvation = -3351.312592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07338 -40.69184 -38.68195 -37.67954 -35.46377 -35.08702 -33.04587 -31.63490 -29.73915 -28.12090 -27.37670 -24.54514 -23.15825 -22.38197 -21.69968 -21.03585 -19.19747 -18.38041 -17.94567 -17.79861 -17.34007 -17.02368 -16.61490 -16.27755 -15.54178 -15.25994 -15.23086 -14.69090 -14.51771 -14.11349 -13.95560 -13.69467 -13.59396 -13.36163 -13.03220 -12.84891 -12.76981 -12.62931 -12.51382 -12.14261 -12.04449 -11.87141 -11.67272 -11.47110 -11.34010 -10.97587 -10.70023 -9.94367 -8.99312 -7.93954 -5.22672 0.82390 1.49757 1.50728 1.58880 1.76642 2.31165 2.35320 2.57280 3.01351 3.27821 3.41100 3.64415 3.71270 3.84773 4.05733 4.14719 4.35657 4.39062 4.43135 4.54776 4.58166 4.69672 4.73228 4.85446 4.87073 4.91681 4.98421 5.09043 5.18191 5.35967 5.52444 5.66424 5.72534 6.27460 6.32600 6.69345 7.35480 7.36936 8.09516 8.33053 9.28859 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.004469 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.183662 B = 6264.286690 C = 7510.466676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.058 0.942 4 C 0.144 3.856 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.070 4.070 9 N -0.967 5.967 10 Si 0.969 3.031 11 H -0.285 1.285 12 H -0.301 1.301 13 H -0.271 1.271 14 N -0.710 5.710 15 C 0.508 3.492 16 O -0.582 6.582 17 C -0.128 4.128 18 C -0.093 4.093 19 H 0.116 0.884 20 C 0.063 3.937 21 O -0.382 6.382 22 C 0.482 3.518 23 O -0.496 6.496 24 C -0.164 4.164 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.375 0.625 31 H 0.250 0.750 32 H 0.410 0.590 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -2.347 -10.159 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.077 0.923 4 C 0.017 3.983 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.095 0.905 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.799 3.201 11 H -0.212 1.212 12 H -0.228 1.228 13 H -0.196 1.196 14 N -0.360 5.360 15 C 0.296 3.704 16 O -0.463 6.463 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.134 0.866 20 C -0.010 4.010 21 O -0.300 6.300 22 C 0.325 3.675 23 O -0.381 6.381 24 C -0.202 4.202 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.208 0.792 31 H 0.059 0.941 32 H 0.246 0.754 33 H 0.126 0.874 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.160 0.840 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.689 -1.439 -10.515 16.542 hybrid contribution 1.271 -0.346 0.767 1.524 sum -11.418 -1.786 -9.748 15.119 Atomic orbital electron populations 1.21985 0.92793 1.03042 1.02542 1.21033 0.95218 0.96095 0.84171 0.92336 1.21138 0.83981 0.98006 0.95150 1.42522 1.01857 1.70081 1.24146 1.19618 0.89858 1.28573 0.99567 0.90474 1.25481 0.97482 1.02971 1.00342 1.69801 1.07016 1.52831 1.32079 0.85207 0.77602 0.77927 0.79395 1.21195 1.22753 1.19613 1.46010 1.66214 1.14710 1.09101 1.21146 0.76713 0.87088 0.85493 1.90671 1.52346 1.17374 1.85861 1.21815 1.05365 0.99487 0.90068 1.22106 1.00428 0.94923 0.93705 0.86620 1.24132 0.87387 1.01136 0.88364 1.87087 1.40853 1.74115 1.27972 1.24062 0.79232 0.80171 0.84024 1.90669 1.62800 1.68066 1.16576 1.23136 0.99849 0.99544 0.97662 0.90785 0.92588 0.90907 0.94178 0.94979 0.79235 0.94132 0.75389 0.87421 0.84108 0.89067 0.88824 0.84007 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.48 71.98 0.68 -2.55 16 2 C 0.14 4.10 2.73 44.99 0.12 4.23 16 3 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 4 C 0.14 5.04 5.82 86.38 0.50 5.54 16 5 N -0.74 -34.59 5.43 -343.44 -1.87 -36.46 16 6 C -0.24 -12.81 9.99 84.03 0.84 -11.97 16 7 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 8 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 9 N -0.97 -56.84 13.06 21.65 0.28 -56.56 16 10 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 N -0.71 -18.36 4.52 -442.53 -2.00 -20.35 16 15 C 0.51 12.55 7.33 87.66 0.64 13.20 16 16 O -0.58 -18.09 14.77 -3.03 -0.04 -18.13 16 17 C -0.13 -1.98 4.93 29.85 0.15 -1.83 16 18 C -0.09 -1.47 2.75 -9.85 -0.03 -1.49 16 19 H 0.12 1.68 8.04 -2.39 -0.02 1.66 16 20 C 0.06 1.45 6.50 72.41 0.47 1.92 16 21 O -0.38 -10.46 11.07 -54.80 -0.61 -11.07 16 22 C 0.48 11.80 8.57 71.58 0.61 12.41 16 23 O -0.50 -15.57 18.00 21.53 0.39 -15.18 16 24 C -0.16 -2.19 6.58 30.72 0.20 -1.99 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.38 18.85 7.33 -92.70 -0.68 18.17 16 31 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.41 9.74 8.60 -92.71 -0.80 8.94 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.14 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.09 2.44 7.33 -2.38 -0.02 2.43 16 37 H 0.14 1.34 7.82 -2.39 -0.02 1.32 16 38 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -71.62 324.02 2.45 -69.18 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: -0.40 Total: 28.12 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.66 Total: 14.07 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.58 Total: -113.37 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.26 Total: -44.38 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -71.62 2.45 -69.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321822760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.074 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds