Wall clock time and date at job start Mon Mar 30 2020 02:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.48000 * 2 1 4 4 C 1.53093 * 109.47594 * 239.97564 * 2 1 3 5 5 C 1.53180 * 109.16262 * 182.40967 * 4 2 1 6 6 H 1.08995 * 109.54163 * 176.93399 * 5 4 2 7 7 C 1.50700 * 109.54150 * 297.11619 * 5 4 2 8 8 O 1.21278 * 120.00429 * 359.82045 * 7 5 4 9 9 N 1.34778 * 119.99743 * 179.82127 * 7 5 4 10 10 C 1.46498 * 120.00064 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47272 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99886 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.37092 * 120.00310 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99734 * 359.72414 * 14 13 11 16 16 C 1.38955 * 120.00445 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99445 * 359.71974 * 16 14 13 18 18 Si 1.86798 * 119.99993 * 179.72627 * 16 14 13 19 19 H 1.48493 * 109.47326 * 89.99949 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99699 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99410 * 18 16 14 22 22 C 1.53184 * 109.10397 * 57.02429 * 5 4 2 23 23 C 1.53274 * 109.06532 * 303.05710 * 22 5 4 24 24 O 1.42900 * 109.47867 * 120.03697 * 2 1 3 25 25 H 1.08996 * 109.47552 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46912 * 300.02672 * 1 2 3 27 27 H 1.09007 * 109.47004 * 60.01904 * 1 2 3 28 28 H 1.08993 * 109.52359 * 62.50567 * 4 2 1 29 29 H 1.08999 * 109.57448 * 302.34489 * 4 2 1 30 30 H 0.97004 * 120.00319 * 359.97438 * 9 7 5 31 31 H 1.08998 * 109.47084 * 59.99574 * 10 9 7 32 32 H 1.09001 * 109.46927 * 299.99804 * 10 9 7 33 33 H 0.97004 * 120.00041 * 0.02562 * 13 11 10 34 34 H 0.97000 * 119.99412 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.52500 * 62.88671 * 22 5 4 36 36 H 1.09012 * 109.51625 * 183.06997 * 22 5 4 37 37 H 1.09000 * 109.46360 * 297.56111 * 23 22 5 38 38 H 1.09006 * 109.46578 * 177.56207 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5710 -0.7709 -1.2123 6 1 3.9390 -1.3313 -2.0717 7 6 4.1211 0.6316 -1.2518 8 8 3.3651 1.5782 -1.3079 9 7 5.4533 0.8339 -1.2248 10 6 5.9882 2.1972 -1.2637 11 6 7.4938 2.1475 -1.2230 12 8 8.0640 1.0785 -1.1665 13 7 8.2067 3.2910 -1.2494 14 6 9.5764 3.2459 -1.2118 15 1 10.0840 2.2942 -1.1566 16 6 10.3114 4.4248 -1.2384 17 7 9.6937 5.5827 -1.3052 18 14 12.1775 4.3635 -1.1795 19 1 12.7142 4.2893 -2.5621 20 1 12.6921 5.5872 -0.5138 21 1 12.6096 3.1655 -0.4158 22 6 4.0193 -1.4610 0.0797 23 6 3.4307 -0.7096 1.2789 24 8 2.0066 -0.6744 1.1663 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5136 -0.8902 28 1 1.7148 -0.1842 -2.1398 29 1 1.6442 -1.7374 -1.2722 30 1 6.0581 0.0768 -1.1796 31 1 5.6193 2.7569 -0.4042 32 1 5.6659 2.6878 -2.1822 33 1 7.7507 4.1460 -1.2942 34 1 10.2069 6.4057 -1.3242 35 1 3.6630 -2.4911 0.0850 36 1 5.1078 -1.4508 0.1392 37 1 3.8193 0.3087 1.2958 38 1 3.7100 -1.2205 2.2004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323225018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:49 Heat of formation + Delta-G solvation = -136.155780 kcal Electronic energy + Delta-G solvation = -21004.540496 eV Core-core repulsion = 17653.362175 eV Total energy + Delta-G solvation = -3351.178321 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64914 -38.68521 -37.82961 -34.57323 -33.92631 -33.61269 -32.68014 -31.41592 -28.13766 -27.75351 -25.01830 -24.05366 -22.70465 -21.44727 -19.80936 -19.32563 -18.11035 -16.88951 -16.34727 -16.26787 -15.73294 -15.42167 -15.36201 -14.67872 -14.56051 -14.20580 -13.91394 -13.79612 -13.51547 -12.75378 -12.54025 -12.46918 -12.24919 -12.06134 -11.96534 -11.90249 -11.66618 -11.17930 -11.14871 -10.82640 -10.50392 -10.48707 -10.35125 -9.77855 -9.67488 -9.24769 -8.83856 -8.68111 -8.14284 -6.55254 -3.97428 2.72540 3.08943 3.19251 3.23211 3.32458 3.69438 3.75399 4.08081 4.48488 4.62725 4.67963 4.82612 4.83846 5.05805 5.13187 5.17860 5.32532 5.42921 5.51382 5.53942 5.62246 5.71037 5.79427 5.83728 5.88658 5.90577 5.93245 6.02145 6.08375 6.18344 6.63059 7.23655 7.42389 7.73406 7.87859 8.36371 8.41703 9.00646 9.34946 9.82584 10.61571 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.003513 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.734992 B = 7967.585623 C = 8179.316265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.086 0.914 4 C -0.126 4.126 5 C -0.112 4.112 6 H 0.102 0.898 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.705 5.705 10 C 0.108 3.892 11 C 0.427 3.573 12 O -0.598 6.598 13 N -0.548 5.548 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.026 3.974 17 N -0.894 5.894 18 Si 0.933 3.067 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.148 4.148 23 C 0.060 3.940 24 O -0.383 6.383 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.396 0.604 34 H 0.275 0.725 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.523 -10.286 1.363 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.103 0.897 4 C -0.164 4.164 5 C -0.133 4.133 6 H 0.120 0.880 7 C 0.299 3.701 8 O -0.425 6.425 9 N -0.359 5.359 10 C -0.020 4.020 11 C 0.212 3.788 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.436 4.436 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.186 4.186 23 C -0.017 4.017 24 O -0.303 6.303 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.689 -10.166 1.491 17.116 hybrid contribution 1.296 0.391 -0.295 1.385 sum -12.394 -9.776 1.196 15.830 Atomic orbital electron populations 1.21730 0.93442 1.02286 1.02359 1.22385 0.94776 0.97105 0.84174 0.89660 1.21987 0.92849 1.01639 0.99902 1.21409 0.97497 0.93936 1.00453 0.88008 1.20544 0.82123 0.91285 0.76129 1.90633 1.57663 1.43921 1.50241 1.45761 1.06808 1.09612 1.73705 1.20960 0.93654 0.84186 1.03174 1.19736 0.87892 0.85387 0.85740 1.90495 1.71349 1.29252 1.57379 1.41799 1.07216 1.06879 1.62360 1.19734 0.80744 0.94855 1.48226 0.87659 1.25335 1.01078 0.94559 0.96710 1.69614 1.36974 0.97744 1.49069 0.85806 0.81674 0.77949 0.78571 1.20239 1.20765 1.19288 1.22246 1.01916 1.00505 0.93944 1.22571 0.81334 0.99789 0.98009 1.87874 1.20605 1.78234 1.43576 0.92300 0.92066 0.91137 0.90170 0.90683 0.75118 0.89916 0.89863 0.77039 0.91543 0.89867 0.89900 0.93123 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.56 37.16 0.36 -1.07 16 2 C 0.07 0.90 2.98 -26.68 -0.08 0.83 16 3 H 0.09 1.27 5.81 -51.93 -0.30 0.97 16 4 C -0.13 -1.39 4.56 -26.59 -0.12 -1.51 16 5 C -0.11 -1.28 3.04 -91.58 -0.28 -1.55 16 6 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 7 C 0.51 7.67 5.82 -10.98 -0.06 7.61 16 8 O -0.55 -9.56 13.85 5.56 0.08 -9.49 16 9 N -0.71 -11.26 5.41 -61.47 -0.33 -11.59 16 10 C 0.11 1.94 6.15 -5.19 -0.03 1.91 16 11 C 0.43 9.61 7.85 -10.99 -0.09 9.52 16 12 O -0.60 -14.99 15.24 5.54 0.08 -14.90 16 13 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 14 C -0.31 -8.24 9.68 -14.93 -0.14 -8.38 16 15 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.67 13.05 55.50 0.72 -22.95 16 18 Si 0.93 20.34 29.55 -169.99 -5.02 15.31 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.15 -1.53 5.58 -26.49 -0.15 -1.68 16 23 C 0.06 0.71 6.62 37.30 0.25 0.95 16 24 O -0.38 -5.05 10.41 -35.23 -0.37 -5.42 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.41 6.44 6.84 -40.82 -0.28 6.16 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 7.51 -51.92 -0.39 0.44 16 37 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -30.45 313.65 -6.02 -36.47 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -5.41 Total: 14.10 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.45 Total: 7.21 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.33 Total: -48.01 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.21 Total: -29.81 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.45 -6.02 -36.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.684 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds