Wall clock time and date at job start Mon Mar 30 2020 02:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.48000 * 2 1 4 4 C 1.53093 * 109.47594 * 239.97564 * 2 1 3 5 5 C 1.53180 * 109.16262 * 182.40967 * 4 2 1 6 6 H 1.08995 * 109.54163 * 176.93399 * 5 4 2 7 7 C 1.50700 * 109.54150 * 297.11619 * 5 4 2 8 8 O 1.21278 * 120.00429 * 359.82045 * 7 5 4 9 9 N 1.34778 * 119.99743 * 179.82127 * 7 5 4 10 10 C 1.46498 * 120.00064 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47272 * 180.02562 * 10 9 7 12 12 O 1.21295 * 119.99886 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00110 * 179.97438 * 11 10 9 14 14 C 1.37092 * 120.00310 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99734 * 359.72414 * 14 13 11 16 16 C 1.38955 * 120.00445 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99445 * 359.71974 * 16 14 13 18 18 Si 1.86798 * 119.99993 * 179.72627 * 16 14 13 19 19 H 1.48493 * 109.47326 * 89.99949 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99699 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99410 * 18 16 14 22 22 C 1.53184 * 109.10397 * 57.02429 * 5 4 2 23 23 C 1.53274 * 109.06532 * 303.05710 * 22 5 4 24 24 O 1.42900 * 109.47867 * 120.03697 * 2 1 3 25 25 H 1.08996 * 109.47552 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46912 * 300.02672 * 1 2 3 27 27 H 1.09007 * 109.47004 * 60.01904 * 1 2 3 28 28 H 1.08993 * 109.52359 * 62.50567 * 4 2 1 29 29 H 1.08999 * 109.57448 * 302.34489 * 4 2 1 30 30 H 0.97004 * 120.00319 * 359.97438 * 9 7 5 31 31 H 1.08998 * 109.47084 * 59.99574 * 10 9 7 32 32 H 1.09001 * 109.46927 * 299.99804 * 10 9 7 33 33 H 0.97004 * 120.00041 * 0.02562 * 13 11 10 34 34 H 0.97000 * 119.99412 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.52500 * 62.88671 * 22 5 4 36 36 H 1.09012 * 109.51625 * 183.06997 * 22 5 4 37 37 H 1.09000 * 109.46360 * 297.56111 * 23 22 5 38 38 H 1.09006 * 109.46578 * 177.56207 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5710 -0.7709 -1.2123 6 1 3.9390 -1.3313 -2.0717 7 6 4.1211 0.6316 -1.2518 8 8 3.3651 1.5782 -1.3079 9 7 5.4533 0.8339 -1.2248 10 6 5.9882 2.1972 -1.2637 11 6 7.4938 2.1475 -1.2230 12 8 8.0640 1.0785 -1.1665 13 7 8.2067 3.2910 -1.2494 14 6 9.5764 3.2459 -1.2118 15 1 10.0840 2.2942 -1.1566 16 6 10.3114 4.4248 -1.2384 17 7 9.6937 5.5827 -1.3052 18 14 12.1775 4.3635 -1.1795 19 1 12.7142 4.2893 -2.5621 20 1 12.6921 5.5872 -0.5138 21 1 12.6096 3.1655 -0.4158 22 6 4.0193 -1.4610 0.0797 23 6 3.4307 -0.7096 1.2789 24 8 2.0066 -0.6744 1.1663 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8898 27 1 -0.3633 0.5136 -0.8902 28 1 1.7148 -0.1842 -2.1398 29 1 1.6442 -1.7374 -1.2722 30 1 6.0581 0.0768 -1.1796 31 1 5.6193 2.7569 -0.4042 32 1 5.6659 2.6878 -2.1822 33 1 7.7507 4.1460 -1.2942 34 1 10.2069 6.4057 -1.3242 35 1 3.6630 -2.4911 0.0850 36 1 5.1078 -1.4508 0.1392 37 1 3.8193 0.3087 1.2958 38 1 3.7100 -1.2205 2.2004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323225018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:48 Heat of formation + Delta-G solvation = -158.776098 kcal Electronic energy + Delta-G solvation = -21005.521387 eV Core-core repulsion = 17653.362175 eV Total energy + Delta-G solvation = -3352.159212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76122 -40.30768 -39.14070 -36.28526 -35.42637 -34.68542 -33.60828 -33.37136 -29.52238 -28.77469 -26.68987 -25.23160 -23.68415 -22.49344 -21.40792 -20.70550 -20.03045 -18.21820 -17.38888 -17.31658 -17.10457 -16.96883 -16.63831 -16.33788 -15.84671 -15.75363 -15.25144 -14.97598 -14.78302 -14.01172 -13.88497 -13.56430 -13.50577 -13.32523 -13.24840 -12.91643 -12.91322 -12.79564 -12.47280 -12.13608 -12.03824 -11.71187 -11.58510 -11.49386 -10.87028 -10.57877 -10.27808 -10.18278 -10.09356 -8.52802 -6.03161 1.35209 1.42125 1.54354 1.54945 1.88954 2.01385 2.30886 2.85057 3.10172 3.14442 3.54715 3.68635 3.78998 3.96988 4.07162 4.21989 4.28091 4.38874 4.40074 4.43810 4.55520 4.68383 4.72575 4.82078 4.85766 4.97956 5.04787 5.07962 5.19054 5.28304 5.34904 5.37723 5.89863 6.29793 6.43401 6.50960 7.01593 7.14372 7.42248 7.91919 8.64104 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.003513 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.734992 B = 7967.585623 C = 8179.316265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.067 3.933 3 H 0.053 0.947 4 C -0.122 4.122 5 C -0.108 4.108 6 H 0.128 0.872 7 C 0.512 3.488 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.121 3.879 11 C 0.432 3.568 12 O -0.623 6.623 13 N -0.559 5.559 14 C -0.338 4.338 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.916 5.916 18 Si 0.997 3.003 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.142 4.142 23 C 0.054 3.946 24 O -0.394 6.394 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.414 0.586 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.280 0.720 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.025 0.975 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -11.601 1.111 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 H 0.071 0.929 4 C -0.160 4.160 5 C -0.129 4.129 6 H 0.145 0.855 7 C 0.300 3.700 8 O -0.453 6.453 9 N -0.360 5.360 10 C -0.007 4.007 11 C 0.219 3.781 12 O -0.511 6.511 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.820 3.180 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.180 4.180 23 C -0.023 4.023 24 O -0.313 6.313 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.252 0.748 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.019 -11.487 1.238 18.166 hybrid contribution 1.321 0.790 -0.192 1.551 sum -12.698 -10.697 1.046 16.636 Atomic orbital electron populations 1.21729 0.91813 1.03247 1.02698 1.22416 0.96163 0.95625 0.84811 0.92870 1.21994 0.92414 1.02729 0.98875 1.21515 0.97744 0.91554 1.02113 0.85469 1.21245 0.81231 0.92677 0.74801 1.90631 1.58093 1.45311 1.51287 1.45784 1.07421 1.08610 1.74206 1.20749 0.90147 0.85884 1.03918 1.20413 0.89610 0.84413 0.83620 1.90470 1.72596 1.30077 1.57921 1.41856 1.06814 1.07541 1.63265 1.19748 0.82027 0.94643 1.50299 0.89491 1.26137 1.05321 0.93914 0.95739 1.69681 1.38580 0.98225 1.49153 0.84865 0.76284 0.78076 0.78762 1.19532 1.19699 1.19356 1.22243 1.02065 1.01290 0.92373 1.22688 0.80920 0.98885 0.99779 1.87864 1.21236 1.78106 1.44121 0.90945 0.92452 0.90169 0.90389 0.88235 0.74796 0.89238 0.88954 0.76778 0.91057 0.87403 0.89563 0.95659 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.56 71.98 0.69 -1.90 16 2 C 0.07 1.60 2.98 30.63 0.09 1.69 16 3 H 0.05 1.62 5.81 -2.39 -0.01 1.60 16 4 C -0.12 -2.42 4.56 30.69 0.14 -2.28 16 5 C -0.11 -2.23 3.04 -11.42 -0.03 -2.27 16 6 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 7 C 0.51 14.85 5.82 87.66 0.51 15.36 16 8 O -0.57 -19.98 13.85 -3.02 -0.04 -20.02 16 9 N -0.71 -22.05 5.41 -466.79 -2.52 -24.57 16 10 C 0.12 4.33 6.15 85.63 0.53 4.86 16 11 C 0.43 19.62 7.85 87.66 0.69 20.31 16 12 O -0.62 -31.43 15.24 -3.08 -0.05 -31.47 16 13 N -0.56 -27.84 5.29 -306.98 -1.62 -29.46 16 14 C -0.34 -18.45 9.68 84.04 0.81 -17.64 16 15 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 16 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 17 N -0.92 -48.46 13.05 21.66 0.28 -48.17 16 18 Si 1.00 41.37 29.55 68.60 2.03 43.40 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 C -0.14 -2.60 5.58 30.75 0.17 -2.43 16 23 C 0.05 1.21 6.62 72.07 0.48 1.69 16 24 O -0.39 -9.89 10.41 -148.98 -1.55 -11.44 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.59 8.02 -2.39 -0.02 1.57 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.41 12.59 6.84 -92.71 -0.63 11.96 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.40 19.12 7.90 -92.71 -0.73 18.39 16 34 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.54 7.51 -2.38 -0.02 1.53 16 37 H 0.03 0.69 7.38 -2.39 -0.02 0.67 16 38 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -65.25 313.65 0.78 -64.46 By element: Atomic # 1 Polarization: 40.23 SS G_CDS: -0.28 Total: 39.95 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 4.54 Total: 17.33 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -3.86 Total: -102.21 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -1.64 Total: -62.93 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -65.25 0.78 -64.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323225018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.311 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds